RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 FKBP8Q14318 412 aa13.56□□□□□ -0.24
SMARCD3-208ENST00000472789 PROSER3Q2NL68 480 aa13.56□□□□□ -0.24
SMARCD3-208ENST00000472789 TWISTNBQ3B726 338 aaPredicted RBP13.56□□□□□ -0.24
SMARCD3-208ENST00000472789 KIF6Q6ZMV9 814 aa13.56□□□□□ -0.24
SMARCD3-208ENST00000472789 TRMT2AQ8IZ69 625 aaKnown RBP13.56□□□□□ -0.24
SMARCD3-208ENST00000472789 NLGN2Q8NFZ4 835 aa13.56□□□□□ -0.24
SMARCD3-208ENST00000472789 CCDC30Q5VVM6 783 aa13.55□□□□□ -0.24
SMARCD3-208ENST00000472789 CHMP4AQ9BY43 222 aa13.55□□□□□ -0.24
SMARCD3-208ENST00000472789 DBF4Q9UBU7 674 aaPredicted RBP13.55□□□□□ -0.24
SMARCD3-208ENST00000472789 C4AP0C0L4 1744 aa13.55□□□□□ -0.24
SMARCD3-208ENST00000472789 CAMTA2O94983 1202 aa13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 NEFLP07196 543 aa13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 CT47B1P0C2W7 299 aaPredicted RBP13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 PDIA6Q15084 440 aa13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 TTLL7Q6ZT98 887 aa13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 PELP1Q8IZL8 1130 aaKnown RBP13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 STK31Q9BXU1 1019 aa13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 ZBTB3Q9H5J0 574 aa13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 DDX21Q9NR30 783 aaKnown RBP eCLIP13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 PARP3Q9Y6F1 533 aa13.54□□□□□ -0.24
SMARCD3-208ENST00000472789 IFFO2Q5TF58 517 aa13.53□□□□□ -0.24
SMARCD3-208ENST00000472789 COPS6Q7L5N1 327 aa13.53□□□□□ -0.24
SMARCD3-208ENST00000472789 XAGE3Q8WTP9 111 aa13.53□□□□□ -0.24
SMARCD3-208ENST00000472789 ZNF652Q9Y2D9 606 aa13.53□□□□□ -0.24
SMARCD3-208ENST00000472789 NPHP1O15259 732 aa13.52□□□□□ -0.25
SMARCD3-208ENST00000472789 YBX3P16989 372 aaKnown RBP eCLIP13.52□□□□□ -0.25
SMARCD3-208ENST00000472789 NFIXQ14938 502 aa13.52□□□□□ -0.25
SMARCD3-208ENST00000472789 TBC1D9BQ66K14 1250 aa13.52□□□□□ -0.25
SMARCD3-208ENST00000472789 BCL2L12Q9HB09 334 aa13.52□□□□□ -0.25
SMARCD3-208ENST00000472789 HYPKQ9NX55 129 aa13.52□□□□□ -0.25
SMARCD3-208ENST00000472789 RCAN3Q9UKA8 241 aa13.52□□□□□ -0.25
SMARCD3-208ENST00000472789 MAP3K15Q6ZN16 1313 aa13.51□□□□□ -0.25
SMARCD3-208ENST00000472789 FAM177BA6PVY3 158 aa13.5□□□□□ -0.25
SMARCD3-208ENST00000472789 VAMP4O75379 141 aa13.5□□□□□ -0.25
SMARCD3-208ENST00000472789 DDR1Q08345 913 aa13.5□□□□□ -0.25
SMARCD3-208ENST00000472789 HLFQ16534 295 aa13.5□□□□□ -0.25
SMARCD3-208ENST00000472789 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.5□□□□□ -0.25
SMARCD3-208ENST00000472789 ZNF428Q96B54 188 aa13.5□□□□□ -0.25
SMARCD3-208ENST00000472789 SETDB2Q96T68 719 aa13.5□□□□□ -0.25
SMARCD3-208ENST00000472789 ERVV-1B6SEH8 477 aa13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 POLRMTO00411 1230 aaKnown RBP13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 SLC4A2P04920 1241 aa13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 SERPINB2P05120 415 aa13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 TM4SF1P30408 202 aa13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 CLEC4GQ6UXB4 293 aa13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 LRP10Q7Z4F1 713 aa13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 PHAXQ9H814 394 aaKnown RBP13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 NIP7Q9Y221 180 aaKnown RBP eCLIP13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 SUPT16HQ9Y5B9 1047 aaKnown RBP13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 SCN7AQ01118 1682 aa13.49□□□□□ -0.25
SMARCD3-208ENST00000472789 GPTP24298 496 aa13.48□□□□□ -0.25
SMARCD3-208ENST00000472789 ANKRD13DQ6ZTN6 518 aa13.48□□□□□ -0.25
SMARCD3-208ENST00000472789 RIC3Q7Z5B4 369 aa13.48□□□□□ -0.25
SMARCD3-208ENST00000472789 CARMIL3Q8ND23 1372 aa13.47□□□□□ -0.25
SMARCD3-208ENST00000472789 DDX58O95786 925 aaKnown RBP13.47□□□□□ -0.25
SMARCD3-208ENST00000472789 GIGYF2Q6Y7W6 1299 aaKnown RBP13.47□□□□□ -0.25
SMARCD3-208ENST00000472789 NBPF5PQ86XG9 351 aaPredicted RBP13.47□□□□□ -0.25
SMARCD3-208ENST00000472789 PLBD2Q8NHP8 589 aa13.47□□□□□ -0.25
SMARCD3-208ENST00000472789 GRIN3BO60391 1043 aa13.46□□□□□ -0.25
SMARCD3-208ENST00000472789 GTF2E1P29083 439 aaPredicted RBP13.46□□□□□ -0.25
SMARCD3-208ENST00000472789 CCDC24Q8N4L8 307 aa13.46□□□□□ -0.25
SMARCD3-208ENST00000472789 CNBD1Q8NA66 436 aa13.46□□□□□ -0.25
SMARCD3-208ENST00000472789 ATP10DQ9P241 1426 aa13.46□□□□□ -0.26
SMARCD3-208ENST00000472789 BCORQ6W2J9 1755 aa13.45□□□□□ -0.26
SMARCD3-208ENST00000472789 RGL2O15211 777 aa13.45□□□□□ -0.26
SMARCD3-208ENST00000472789 FKBP5Q13451 457 aaPredicted RBP13.45□□□□□ -0.26
SMARCD3-208ENST00000472789 HSP90AB3PQ58FF7 597 aa13.45□□□□□ -0.26
SMARCD3-208ENST00000472789 G2E3Q7L622 706 aa13.45□□□□□ -0.26
SMARCD3-208ENST00000472789 WWC3Q9ULE0 1092 aa13.45□□□□□ -0.26
SMARCD3-208ENST00000472789 CD2APQ9Y5K6 639 aa13.45□□□□□ -0.26
SMARCD3-208ENST00000472789 ST5P78524 1137 aa13.44□□□□□ -0.26
SMARCD3-208ENST00000472789 FLIIQ13045 1269 aa13.44□□□□□ -0.26
SMARCD3-208ENST00000472789 BCL2L13Q9BXK5 485 aa13.44□□□□□ -0.26
SMARCD3-208ENST00000472789 ATP5J2-PTCD1G3V325 749 aa13.43□□□□□ -0.26
SMARCD3-208ENST00000472789 TCIRG1Q13488 830 aa13.43□□□□□ -0.26
SMARCD3-208ENST00000472789 ALDH1L2Q3SY69 923 aa13.43□□□□□ -0.26
SMARCD3-208ENST00000472789 PRR5LQ6MZQ0 368 aa13.43□□□□□ -0.26
SMARCD3-208ENST00000472789 TPTE2Q6XPS3 522 aa13.43□□□□□ -0.26
SMARCD3-208ENST00000472789 ZNF34Q8IZ26 560 aa13.43□□□□□ -0.26
SMARCD3-208ENST00000472789 MYD88Q99836 296 aa13.43□□□□□ -0.26
SMARCD3-208ENST00000472789 SMC4Q9NTJ3 1288 aa13.43□□□□□ -0.26
SMARCD3-208ENST00000472789 MAP3K2Q9Y2U5 619 aa13.43□□□□□ -0.26
SMARCD3-208ENST00000472789 PCNTO95613 3336 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 C10orf71Q711Q0 1435 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 NUP98P52948 1817 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 PI4KAP2A4QPH2 592 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 MS4A1P11836 297 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 PARP10Q53GL7 1025 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 SUSD4Q5VX71 490 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 ERICH6BQ5W0A0 696 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 KSR2Q6VAB6 950 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 PPP1R42Q7Z4L9 355 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 PI4KAP1Q8N8J0 262 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 SSH1Q8WYL5 1049 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 NYXQ9GZU5 481 aa13.42□□□□□ -0.26
SMARCD3-208ENST00000472789 UBN2Q6ZU65 1347 aa13.41□□□□□ -0.26
SMARCD3-208ENST00000472789 A0A0G2JLW4 131 aa13.41□□□□□ -0.26
SMARCD3-208ENST00000472789 NEXNQ0ZGT2 675 aa13.41□□□□□ -0.26
SMARCD3-208ENST00000472789 NUTM1Q86Y26 1132 aa13.41□□□□□ -0.26
SMARCD3-208ENST00000472789 UTP14AQ9BVJ6 771 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms