RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	TSC1	Q92574	1164 aa		4.02	□□□□□ -1.77
TTC3-214	ENST00000472398	UCN2	Q96RP3	112 aa		4.02	□□□□□ -1.77
TTC3-214	ENST00000472398	POLR3E	Q9NVU0	708 aa		4.02	□□□□□ -1.77
TTC3-214	ENST00000472398	CWC25	Q9NXE8	425 aa	Predicted RBP	4.02	□□□□□ -1.77
TTC3-214	ENST00000472398	SLAIN2	Q9P270	581 aa		4.02	□□□□□ -1.77
TTC3-214	ENST00000472398	BICDL2	A1A5D9	508 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	PALM3	A6NDB9	673 aa	Predicted RBP	4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	SOWAHD	A6NJG2	315 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	SRGN	P10124	158 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	FLT3	P36888	993 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	CCDC93	Q567U6	631 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	RNF187	Q5TA31	235 aa	Predicted RBP	4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	ARMC3	Q5W041	872 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	PPP1R18	Q6NYC8	613 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	PODN	Q7Z5L7	613 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	STK32A	Q8WU08	396 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	RETREG1	Q9H6L5	497 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	SMC3	Q9UQE7	1217 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	SYNRG	Q9UMZ2	1314 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	SOWAHB	A6NEL2	793 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	IFRD1	O00458	451 aa	Predicted RBP	4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	ATP2B1	P20020	1258 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	RFC5	P40937	340 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	ZBED6	P86452	979 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	POU5F1B	Q06416	359 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	TMEM259	Q4ZIN3	620 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	CCDC174	Q6PII3	467 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	SUGP1	Q8IWZ8	645 aa	Known RBP	4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	LRCH3	Q96II8	777 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	LZTS1	Q9Y250	596 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	GJA3	Q9Y6H8	435 aa		4.01	□□□□□ -1.77
TTC3-214	ENST00000472398	SETD1B	Q9UPS6	1966 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	ACTN4	O43707	911 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	CFH	P08603	1231 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	HSD3B2	P26439	372 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	LMOD1	P29536	600 aa	Predicted RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	DNAJA1	P31689	397 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	SSR1	P43307	286 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	SAFB2	Q14151	953 aa	Known RBP eCLIP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	E2F5	Q15329	346 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	ZC3H12A	Q5D1E8	599 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	LARP1B	Q659C4	914 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	C8orf48	Q96LL4	319 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	PRR14	Q9BWN1	585 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	ZHX3	Q9H4I2	956 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	RAI14	Q9P0K7	980 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	ZMIZ1	Q9ULJ6	1067 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	PPP1R12A	O14974	1030 aa	Predicted RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	RNASEH2A	O75792	299 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	FOS	P01100	380 aa	Predicted RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	NDUFV2	P19404	249 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	MRPL58	Q14197	206 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	TOMM20	Q15388	145 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	MAPRE1	Q15691	268 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	KMT5B	Q4FZB7	885 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	TMEM164	Q5U3C3	297 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	CCDC70	Q6NSX1	233 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	WDR75	Q8IWA0	830 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	KIAA1958	Q8N8K9	716 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	ANKK1	Q8NFD2	765 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	NAP1L4	Q99733	375 aa	Known RBP	4	□□□□□ -1.77
TTC3-214	ENST00000472398	ACBD3	Q9H3P7	528 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	INTU	Q9ULD6	942 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	PCDHGC3	Q9UN70	934 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	AKAP2	Q9Y2D5	859 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	EID1	Q9Y6B2	187 aa		4	□□□□□ -1.77
TTC3-214	ENST00000472398	FDX1	P10109	184 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	MAN1A1	P33908	653 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	ATP6V1A	P38606	617 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	PSMD2	Q13200	908 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	CCDC92	Q53HC0	331 aa	Predicted RBP	3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	NUTM2G	Q5VZR2	741 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	EP400NL	Q6ZTU2	488 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	ACRBP	Q8NEB7	543 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	RUNDC1	Q96C34	613 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	CENPO	Q9BU64	300 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	PTPRH	Q9HD43	1115 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	PCDHB15	Q9Y5E8	787 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	MRVI1	Q9Y6F6	885 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	COL6A1	P12109	1028 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	CLK1	P49759	484 aa	Known RBP	3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	GPSM2	P81274	684 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	MORN1	Q5T089	497 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	PDXDC1	Q6P996	788 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	KRT77	Q7Z794	578 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	NELL1	Q92832	810 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	SLX1A	Q9BQ83	275 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	OSBPL2	Q9H1P3	480 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	ZBTB3	Q9H5J0	574 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	ENAM	Q9NRM1	1142 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	ABCF2	Q9UG63	623 aa		3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	TSR3	Q9UJK0	312 aa	Known RBP	3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	NOL7	Q9UMY1	257 aa	Known RBP	3.99	□□□□□ -1.77
TTC3-214	ENST00000472398	U2AF1L5	P0DN76	240 aa	Predicted RBP	3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	RBP3	P10745	1247 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	U2AF1	Q01081	240 aa	Known RBP eCLIP	3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	RBL2	Q08999	1139 aa		3.98	□□□□□ -1.77
TTC3-214	ENST00000472398	LRRC41	Q15345	812 aa		3.98	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms