RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ZNF652Q9Y2D9 606 aa21.53■■□□□ 1.04
COL9A3-208ENST00000469802 RNF181Q9P0P0 153 aa21.52■■□□□ 1.04
COL9A3-208ENST00000469802 RASSF7Q02833 373 aa21.51■■□□□ 1.03
COL9A3-208ENST00000469802 CCDC24Q8N4L8 307 aa21.51■■□□□ 1.03
COL9A3-208ENST00000469802 PRELPP51888 382 aa21.5■■□□□ 1.03
COL9A3-208ENST00000469802 ST5P78524 1137 aa21.5■■□□□ 1.03
COL9A3-208ENST00000469802 ANKRD36CQ5JPF3 1778 aa21.5■■□□□ 1.03
COL9A3-208ENST00000469802 CEP350Q5VT06 3117 aa21.5■■□□□ 1.03
COL9A3-208ENST00000469802 ZC3H4Q9UPT8 1303 aaKnown RBP21.5■■□□□ 1.03
COL9A3-208ENST00000469802 TMPOP42166 694 aaKnown RBP21.49■■□□□ 1.03
COL9A3-208ENST00000469802 RIPK4P57078 832 aa21.49■■□□□ 1.03
COL9A3-208ENST00000469802 NFKBIEO00221 500 aa21.48■■□□□ 1.03
COL9A3-208ENST00000469802 SRGNP10124 158 aa21.48■■□□□ 1.03
COL9A3-208ENST00000469802 NMRK2Q9NPI5 230 aa21.48■■□□□ 1.03
COL9A3-208ENST00000469802 LMNB1P20700 586 aa21.47■■□□□ 1.03
COL9A3-208ENST00000469802 LMOD3Q0VAK6 560 aa21.47■■□□□ 1.03
COL9A3-208ENST00000469802 HLFQ16534 295 aa21.47■■□□□ 1.03
COL9A3-208ENST00000469802 STYK1Q6J9G0 422 aa21.47■■□□□ 1.03
COL9A3-208ENST00000469802 NBPF5PQ86XG9 351 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-208ENST00000469802 ZNF622Q969S3 477 aaKnown RBP eCLIP21.47■■□□□ 1.03
COL9A3-208ENST00000469802 BABAM1Q9NWV8 329 aa21.47■■□□□ 1.03
COL9A3-208ENST00000469802 ERBB4Q15303 1308 aa21.47■■□□□ 1.03
COL9A3-208ENST00000469802 PRKRIP1Q9H875 184 aaPredicted RBP21.46■■□□□ 1.03
COL9A3-208ENST00000469802 TSPYL4Q9UJ04 414 aa21.46■■□□□ 1.03
COL9A3-208ENST00000469802 NIP7Q9Y221 180 aaKnown RBP eCLIP21.46■■□□□ 1.03
COL9A3-208ENST00000469802 KLRG2A4D1S0 409 aaPredicted RBP21.45■■□□□ 1.02
COL9A3-208ENST00000469802 ERVV-1B6SEH8 477 aa21.45■■□□□ 1.02
COL9A3-208ENST00000469802 NPHP1O15259 732 aa21.45■■□□□ 1.02
COL9A3-208ENST00000469802 MAP3K15Q6ZN16 1313 aa21.45■■□□□ 1.02
COL9A3-208ENST00000469802 TOMM70O94826 608 aa21.44■■□□□ 1.02
COL9A3-208ENST00000469802 HSPA6P17066 643 aa21.44■■□□□ 1.02
COL9A3-208ENST00000469802 CCDC146Q8IYE0 955 aa21.44■■□□□ 1.02
COL9A3-208ENST00000469802 CNKSR1Q969H4 720 aa21.44■■□□□ 1.02
COL9A3-208ENST00000469802 MASTLQ96GX5 879 aa21.44■■□□□ 1.02
COL9A3-208ENST00000469802 KDM2BQ8NHM5 1336 aa21.44■■□□□ 1.02
COL9A3-208ENST00000469802 IBTKQ9P2D0 1353 aaPredicted RBP21.44■■□□□ 1.02
COL9A3-208ENST00000469802 WDR90Q96KV7 1748 aa21.43■■□□□ 1.02
COL9A3-208ENST00000469802 PRPF40BQ6NWY9 871 aaKnown RBP21.43■■□□□ 1.02
COL9A3-208ENST00000469802 LRP10Q7Z4F1 713 aa21.43■■□□□ 1.02
COL9A3-208ENST00000469802 RUNDC1Q96C34 613 aa21.43■■□□□ 1.02
COL9A3-208ENST00000469802 LTBP3Q9NS15 1303 aa21.43■■□□□ 1.02
COL9A3-208ENST00000469802 RIC1Q4ADV7 1423 aa21.43■■□□□ 1.02
COL9A3-208ENST00000469802 C21orf2O43822 256 aa21.42■■□□□ 1.02
COL9A3-208ENST00000469802 WDR43Q15061 677 aaKnown RBP eCLIP21.42■■□□□ 1.02
COL9A3-208ENST00000469802 TPTE2Q6XPS3 522 aa21.42■■□□□ 1.02
COL9A3-208ENST00000469802 TTLL7Q6ZT98 887 aa21.42■■□□□ 1.02
COL9A3-208ENST00000469802 RRP7AQ9Y3A4 280 aaKnown RBP21.42■■□□□ 1.02
COL9A3-208ENST00000469802 ABCC12Q96J65 1359 aa21.41■■□□□ 1.02
COL9A3-208ENST00000469802 MYL6BP14649 208 aa21.41■■□□□ 1.02
COL9A3-208ENST00000469802 KIF6Q6ZMV9 814 aa21.41■■□□□ 1.02
COL9A3-208ENST00000469802 ADAMTS8Q9UP79 889 aa21.41■■□□□ 1.02
COL9A3-208ENST00000469802 TRIM35Q9UPQ4 493 aa21.41■■□□□ 1.02
COL9A3-208ENST00000469802 UBN2Q6ZU65 1347 aa21.4■■□□□ 1.02
COL9A3-208ENST00000469802 PDIA6Q15084 440 aa21.4■■□□□ 1.02
COL9A3-208ENST00000469802 NGEFQ8N5V2 710 aa21.4■■□□□ 1.02
COL9A3-208ENST00000469802 LAMB2P55268 1798 aa21.4■■□□□ 1.02
COL9A3-208ENST00000469802 NPR1P16066 1061 aa21.39■■□□□ 1.01
COL9A3-208ENST00000469802 C7orf43Q8WVR3 580 aa21.39■■□□□ 1.01
COL9A3-208ENST00000469802 CHL1O00533 1208 aa21.38■■□□□ 1.01
COL9A3-208ENST00000469802 SOGA3Q5TF21 947 aa21.38■■□□□ 1.01
COL9A3-208ENST00000469802 RBM46Q8TBY0 533 aaKnown RBP21.38■■□□□ 1.01
COL9A3-208ENST00000469802 TAOK3Q9H2K8 898 aa21.38■■□□□ 1.01
COL9A3-208ENST00000469802 ZBTB3Q9H5J0 574 aa21.38■■□□□ 1.01
COL9A3-208ENST00000469802 ZNF219Q9P2Y4 722 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-208ENST00000469802 GLTPD2A6NH11 291 aa21.37■■□□□ 1.01
COL9A3-208ENST00000469802 FAM177BA6PVY3 158 aa21.37■■□□□ 1.01
COL9A3-208ENST00000469802 NEUROD2Q15784 382 aa21.37■■□□□ 1.01
COL9A3-208ENST00000469802 PROSER3Q2NL68 480 aa21.37■■□□□ 1.01
COL9A3-208ENST00000469802 CRY2Q49AN0 593 aa21.37■■□□□ 1.01
COL9A3-208ENST00000469802 NYXQ9GZU5 481 aa21.37■■□□□ 1.01
COL9A3-208ENST00000469802 SNED1Q8TER0 1413 aa21.37■■□□□ 1.01
COL9A3-208ENST00000469802 GIGYF2Q6Y7W6 1299 aaKnown RBP21.36■■□□□ 1.01
COL9A3-208ENST00000469802 ZNF34Q8IZ26 560 aa21.36■■□□□ 1.01
COL9A3-208ENST00000469802 RRAGCQ9HB90 399 aa21.35■■□□□ 1.01
COL9A3-208ENST00000469802 EIF2S2P20042 333 aaKnown RBP21.34■■□□□ 1.01
COL9A3-208ENST00000469802 NUTM1Q86Y26 1132 aa21.34■■□□□ 1.01
COL9A3-208ENST00000469802 NTSR2O95665 410 aa21.33■■□□□ 1.01
COL9A3-208ENST00000469802 GPTP24298 496 aa21.33■■□□□ 1.01
COL9A3-208ENST00000469802 KRT24Q2M2I5 525 aa21.33■■□□□ 1.01
COL9A3-208ENST00000469802 ERFEQ4G0M1 354 aa21.33■■□□□ 1.01
COL9A3-208ENST00000469802 CCDC93Q567U6 631 aa21.33■■□□□ 1.01
COL9A3-208ENST00000469802 SUSD4Q5VX71 490 aa21.33■■□□□ 1.01
COL9A3-208ENST00000469802 ANXA1P04083 346 aa21.32■■□□□ 1
COL9A3-208ENST00000469802 GTF2E1P29083 439 aaPredicted RBP21.32■■□□□ 1
COL9A3-208ENST00000469802 C16orf71Q8IYS4 520 aaPredicted RBP21.32■■□□□ 1
COL9A3-208ENST00000469802 SCN4AP35499 1836 aa21.32■■□□□ 1
COL9A3-208ENST00000469802 HOXB7P09629 217 aa21.31■■□□□ 1
COL9A3-208ENST00000469802 APLP1P51693 650 aa21.31■■□□□ 1
COL9A3-208ENST00000469802 FSTL1Q12841 308 aa21.31■■□□□ 1
COL9A3-208ENST00000469802 DDX60Q8IY21 1712 aaKnown RBP21.31■■□□□ 1
COL9A3-208ENST00000469802 ALDH1B1P30837 517 aa21.3■■□□□ 1
COL9A3-208ENST00000469802 HOXA10P31260 410 aaPredicted RBP21.3■■□□□ 1
COL9A3-208ENST00000469802 PARP10Q53GL7 1025 aa21.3■■□□□ 1
COL9A3-208ENST00000469802 CFAP44Q96MT7 982 aa21.3■■□□□ 1
COL9A3-208ENST00000469802 DDX21Q9NR30 783 aaKnown RBP eCLIP21.3■■□□□ 1
COL9A3-208ENST00000469802 POTECB2RU33 542 aa21.29■■□□□ 1
COL9A3-208ENST00000469802 VEGFAP15692 232 aaPredicted RBP21.29■■□□□ 1
COL9A3-208ENST00000469802 OLFM4Q6UX06 510 aa21.29■■□□□ 1
COL9A3-208ENST00000469802 ZNF853P0CG23 659 aa21.28■■□□□ 1
COL9A3-208ENST00000469802 FKBP4Q02790 459 aaKnown RBP eCLIP21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms