RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 MKRN1Q9UHC7 482 aaKnown RBP7.49□□□□□ -1.21
PTPN4-209ENST00000469511 CGNL1Q0VF96 1302 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 KDM2BQ8NHM5 1336 aa7.49□□□□□ -1.21
PTPN4-209ENST00000469511 KDRP35968 1356 aa7.48□□□□□ -1.21
PTPN4-209ENST00000469511 PLEKHG2Q9H7P9 1386 aa7.48□□□□□ -1.21
PTPN4-209ENST00000469511 ADAMTS7Q9UKP4 1686 aa7.48□□□□□ -1.21
PTPN4-209ENST00000469511 KIF20BQ96Q89 1820 aa7.48□□□□□ -1.21
PTPN4-209ENST00000469511 POTEJP0CG39 1038 aa7.48□□□□□ -1.21
PTPN4-209ENST00000469511 NLGN1Q8N2Q7 840 aa7.48□□□□□ -1.21
PTPN4-209ENST00000469511 RTCBQ9Y3I0 505 aaKnown RBP7.48□□□□□ -1.21
PTPN4-209ENST00000469511 EMILIN1Q9Y6C2 1016 aa7.48□□□□□ -1.21
PTPN4-209ENST00000469511 VIRMAQ69YN4 1812 aaKnown RBP7.48□□□□□ -1.21
PTPN4-209ENST00000469511 RTL1A6NKG5 1358 aa7.47□□□□□ -1.21
PTPN4-209ENST00000469511 INSRP06213 1382 aa7.47□□□□□ -1.21
PTPN4-209ENST00000469511 DICER1Q9UPY3 1922 aaKnown RBP7.47□□□□□ -1.21
PTPN4-209ENST00000469511 FAM161AQ3B820 660 aa7.47□□□□□ -1.21
PTPN4-209ENST00000469511 DALRD3Q5D0E6 543 aaKnown RBP7.47□□□□□ -1.21
PTPN4-209ENST00000469511 PLPP6Q8IY26 295 aa7.47□□□□□ -1.21
PTPN4-209ENST00000469511 TESK2Q96S53 571 aa7.47□□□□□ -1.21
PTPN4-209ENST00000469511 CARD11Q9BXL7 1154 aa7.47□□□□□ -1.21
PTPN4-209ENST00000469511 EMILIN3Q9NT22 766 aa7.47□□□□□ -1.21
PTPN4-209ENST00000469511 TMOD3Q9NYL9 352 aa7.47□□□□□ -1.21
PTPN4-209ENST00000469511 PARP3Q9Y6F1 533 aa7.47□□□□□ -1.21
PTPN4-209ENST00000469511 DLEC1Q9Y238 1755 aa7.46□□□□□ -1.21
PTPN4-209ENST00000469511 KDM6AO15550 1401 aaPredicted RBP7.46□□□□□ -1.21
PTPN4-209ENST00000469511 GLTPD2A6NH11 291 aa7.46□□□□□ -1.22
PTPN4-209ENST00000469511 RPS6KA4O75676 772 aa7.46□□□□□ -1.22
PTPN4-209ENST00000469511 VEGFAP15692 232 aaPredicted RBP7.46□□□□□ -1.22
PTPN4-209ENST00000469511 PHKG2P15735 406 aa7.46□□□□□ -1.22
PTPN4-209ENST00000469511 SMYD5Q6GMV2 418 aa7.46□□□□□ -1.22
PTPN4-209ENST00000469511 TMEM92Q6UXU6 159 aa7.46□□□□□ -1.22
PTPN4-209ENST00000469511 ZNF831Q5JPB2 1677 aa7.46□□□□□ -1.22
PTPN4-209ENST00000469511 CACNA1SQ13698 1873 aa7.46□□□□□ -1.22
PTPN4-209ENST00000469511 TJP1Q07157 1748 aa7.46□□□□□ -1.22
PTPN4-209ENST00000469511 NCAPD2Q15021 1401 aa7.45□□□□□ -1.22
PTPN4-209ENST00000469511 SPDYE16A6NNV3 312 aaPredicted RBP7.45□□□□□ -1.22
PTPN4-209ENST00000469511 RFC4P35249 363 aa7.45□□□□□ -1.22
PTPN4-209ENST00000469511 EYA1Q99502 592 aa7.45□□□□□ -1.22
PTPN4-209ENST00000469511 FER1L6Q2WGJ9 1857 aa7.45□□□□□ -1.22
PTPN4-209ENST00000469511 ANKRD31Q8N7Z5 1873 aa7.45□□□□□ -1.22
PTPN4-209ENST00000469511 SMG6Q86US8 1419 aaKnown RBP7.44□□□□□ -1.22
PTPN4-209ENST00000469511 ST20-MTHFSA0A0A6YYL1 179 aa7.44□□□□□ -1.22
PTPN4-209ENST00000469511 NFKBIEO00221 500 aa7.44□□□□□ -1.22
PTPN4-209ENST00000469511 POLRMTO00411 1230 aaKnown RBP7.44□□□□□ -1.22
PTPN4-209ENST00000469511 TM4SF1P30408 202 aa7.44□□□□□ -1.22
PTPN4-209ENST00000469511 PDIA6Q15084 440 aa7.44□□□□□ -1.22
PTPN4-209ENST00000469511 RC3H1Q5TC82 1133 aaKnown RBP7.44□□□□□ -1.22
PTPN4-209ENST00000469511 CNTNAP4Q9C0A0 1308 aa7.44□□□□□ -1.22
PTPN4-209ENST00000469511 FLT4P35916 1363 aa7.44□□□□□ -1.22
PTPN4-209ENST00000469511 ANKRD26Q9UPS8 1709 aa7.44□□□□□ -1.22
PTPN4-209ENST00000469511 DPYSL4O14531 572 aa7.43□□□□□ -1.22
PTPN4-209ENST00000469511 PPM1GO15355 546 aaPredicted RBP7.43□□□□□ -1.22
PTPN4-209ENST00000469511 CRKLP46109 303 aaKnown RBP7.43□□□□□ -1.22
PTPN4-209ENST00000469511 LBX1P52954 281 aa7.43□□□□□ -1.22
PTPN4-209ENST00000469511 IFNL2Q8IZJ0 200 aa7.43□□□□□ -1.22
PTPN4-209ENST00000469511 PUS7Q96PZ0 661 aaKnown RBP7.43□□□□□ -1.22
PTPN4-209ENST00000469511 CARD14Q9BXL6 1004 aa7.43□□□□□ -1.22
PTPN4-209ENST00000469511 SPG7Q9UQ90 795 aa7.43□□□□□ -1.22
PTPN4-209ENST00000469511 USP42Q9H9J4 1324 aaKnown RBP7.43□□□□□ -1.22
PTPN4-209ENST00000469511 NRXN2Q9P2S2 1712 aa7.43□□□□□ -1.22
PTPN4-209ENST00000469511 CARMIL3Q8ND23 1372 aa7.43□□□□□ -1.22
PTPN4-209ENST00000469511 PTCD1O75127 700 aaKnown RBP7.42□□□□□ -1.22
PTPN4-209ENST00000469511 LMNB1P20700 586 aa7.42□□□□□ -1.22
PTPN4-209ENST00000469511 HMGB2P26583 209 aaKnown RBP7.42□□□□□ -1.22
PTPN4-209ENST00000469511 VEGFBP49765 207 aa7.42□□□□□ -1.22
PTPN4-209ENST00000469511 USPL1Q5W0Q7 1092 aa7.42□□□□□ -1.22
PTPN4-209ENST00000469511 INTS5Q6P9B9 1019 aaKnown RBP7.42□□□□□ -1.22
PTPN4-209ENST00000469511 ABHD8Q96I13 439 aa7.42□□□□□ -1.22
PTPN4-209ENST00000469511 SLX4Q8IY92 1834 aa7.42□□□□□ -1.22
PTPN4-209ENST00000469511 TONSLQ96HA7 1378 aa7.42□□□□□ -1.22
PTPN4-209ENST00000469511 COL11A2P13942 1736 aaPredicted RBP7.41□□□□□ -1.22
PTPN4-209ENST00000469511 CASP8AP2Q9UKL3 1982 aa7.41□□□□□ -1.22
PTPN4-209ENST00000469511 DDNO94850 711 aaPredicted RBP7.41□□□□□ -1.22
PTPN4-209ENST00000469511 NFIXQ14938 502 aa7.41□□□□□ -1.22
PTPN4-209ENST00000469511 C3orf67Q6ZVT6 689 aa7.41□□□□□ -1.22
PTPN4-209ENST00000469511 CCDC24Q8N4L8 307 aa7.41□□□□□ -1.22
PTPN4-209ENST00000469511 BCL2L12Q9HB09 334 aa7.41□□□□□ -1.22
PTPN4-209ENST00000469511 PRDM10Q9NQV6 1147 aa7.41□□□□□ -1.22
PTPN4-209ENST00000469511 CNTNAP1P78357 1384 aa7.41□□□□□ -1.22
PTPN4-209ENST00000469511 HSPA8P11142 646 aaKnown RBP7.4□□□□□ -1.22
PTPN4-209ENST00000469511 WBP1LQ9NX94 342 aa7.4□□□□□ -1.22
PTPN4-209ENST00000469511 PDE4DIPQ5VU43 2346 aa7.4□□□□□ -1.23
PTPN4-209ENST00000469511 SCN11AQ9UI33 1791 aa7.39□□□□□ -1.23
PTPN4-209ENST00000469511 WASHC2AQ641Q2 1341 aa7.39□□□□□ -1.23
PTPN4-209ENST00000469511 PASKQ96RG2 1323 aa7.39□□□□□ -1.23
PTPN4-209ENST00000469511 ITGBL1O95965 494 aaPredicted RBP7.39□□□□□ -1.23
PTPN4-209ENST00000469511 MLLT3P42568 568 aaPredicted RBP7.39□□□□□ -1.23
PTPN4-209ENST00000469511 CTCFP49711 727 aaPredicted RBP7.39□□□□□ -1.23
PTPN4-209ENST00000469511 FMR1Q06787 632 aaKnown RBP eCLIP7.39□□□□□ -1.23
PTPN4-209ENST00000469511 EIF4A2Q14240 407 aaKnown RBP7.39□□□□□ -1.23
PTPN4-209ENST00000469511 C2CD5Q86YS7 1000 aa7.39□□□□□ -1.23
PTPN4-209ENST00000469511 DNAJC10Q8IXB1 793 aa7.39□□□□□ -1.23
PTPN4-209ENST00000469511 TTLL6Q8N841 843 aa7.39□□□□□ -1.23
PTPN4-209ENST00000469511 NFATC2IPQ8NCF5 419 aa7.39□□□□□ -1.23
PTPN4-209ENST00000469511 OXER1Q8TDS5 423 aa7.39□□□□□ -1.23
PTPN4-209ENST00000469511 ZC3H15Q8WU90 426 aaKnown RBP7.39□□□□□ -1.23
PTPN4-209ENST00000469511 POLKQ9UBT6 870 aa7.39□□□□□ -1.23
PTPN4-209ENST00000469511 KIF24Q5T7B8 1368 aa7.38□□□□□ -1.23
PTPN4-209ENST00000469511 ZC3H4Q9UPT8 1303 aaKnown RBP7.38□□□□□ -1.23
PTPN4-209ENST00000469511 CCDC85CA6NKD9 419 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms