RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ZNF622Q969S3 477 aaKnown RBP eCLIP21.91■■□□□ 1.1
CCDC28B-204ENST00000469003 KDM2BQ8NHM5 1336 aa21.9■■□□□ 1.1
CCDC28B-204ENST00000469003 ZC3H4Q9UPT8 1303 aaKnown RBP21.89■■□□□ 1.1
CCDC28B-204ENST00000469003 LMNB1P20700 586 aa21.89■■□□□ 1.09
CCDC28B-204ENST00000469003 C16orf71Q8IYS4 520 aaPredicted RBP21.89■■□□□ 1.09
CCDC28B-204ENST00000469003 THUMPD2Q9BTF0 503 aaKnown RBP21.89■■□□□ 1.09
CCDC28B-204ENST00000469003 WDR90Q96KV7 1748 aa21.89■■□□□ 1.09
CCDC28B-204ENST00000469003 EIF4A1P60842 406 aaKnown RBP21.88■■□□□ 1.09
CCDC28B-204ENST00000469003 DDX10Q13206 875 aaKnown RBP21.88■■□□□ 1.09
CCDC28B-204ENST00000469003 CCDC88AQ3V6T2 1871 aa21.88■■□□□ 1.09
CCDC28B-204ENST00000469003 PRELPP51888 382 aa21.87■■□□□ 1.09
CCDC28B-204ENST00000469003 NBPF5PQ86XG9 351 aaPredicted RBP21.87■■□□□ 1.09
CCDC28B-204ENST00000469003 TNRC6CQ9HCJ0 1690 aaKnown RBP21.87■■□□□ 1.09
CCDC28B-204ENST00000469003 NFKBIEO00221 500 aa21.86■■□□□ 1.09
CCDC28B-204ENST00000469003 STYK1Q6J9G0 422 aa21.86■■□□□ 1.09
CCDC28B-204ENST00000469003 RBM46Q8TBY0 533 aaKnown RBP21.86■■□□□ 1.09
CCDC28B-204ENST00000469003 CNKSR1Q969H4 720 aa21.86■■□□□ 1.09
CCDC28B-204ENST00000469003 ARFGEF2Q9Y6D5 1785 aa21.86■■□□□ 1.09
CCDC28B-204ENST00000469003 MYBBP1AQ9BQG0 1328 aaKnown RBP21.85■■□□□ 1.09
CCDC28B-204ENST00000469003 SRGNP10124 158 aa21.85■■□□□ 1.09
CCDC28B-204ENST00000469003 NIP7Q9Y221 180 aaKnown RBP eCLIP21.85■■□□□ 1.09
CCDC28B-204ENST00000469003 TIAM2Q8IVF5 1701 aa21.85■■□□□ 1.09
CCDC28B-204ENST00000469003 FER1L6Q2WGJ9 1857 aa21.85■■□□□ 1.09
CCDC28B-204ENST00000469003 CACNA1SQ13698 1873 aa21.84■■□□□ 1.09
CCDC28B-204ENST00000469003 C21orf2O43822 256 aa21.84■■□□□ 1.09
CCDC28B-204ENST00000469003 MASTLQ96GX5 879 aa21.84■■□□□ 1.09
CCDC28B-204ENST00000469003 SLX4Q8IY92 1834 aa21.83■■□□□ 1.09
CCDC28B-204ENST00000469003 CAPN15O75808 1086 aa21.83■■□□□ 1.09
CCDC28B-204ENST00000469003 RIPK4P57078 832 aa21.83■■□□□ 1.09
CCDC28B-204ENST00000469003 HLFQ16534 295 aa21.83■■□□□ 1.09
CCDC28B-204ENST00000469003 TPTE2Q6XPS3 522 aa21.83■■□□□ 1.09
CCDC28B-204ENST00000469003 KLRG1Q96E93 195 aa21.83■■□□□ 1.09
CCDC28B-204ENST00000469003 ZNF219Q9P2Y4 722 aaPredicted RBP21.83■■□□□ 1.09
CCDC28B-204ENST00000469003 HTRA3P83110 453 aa21.82■■□□□ 1.08
CCDC28B-204ENST00000469003 COL13A1Q5TAT6 717 aaPredicted RBP21.82■■□□□ 1.08
CCDC28B-204ENST00000469003 RRAGCQ9HB90 399 aa21.82■■□□□ 1.08
CCDC28B-204ENST00000469003 NUP98P52948 1817 aa21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 DICER1Q9UPY3 1922 aaKnown RBP21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 GLTPD2A6NH11 291 aa21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 ERVV-1B6SEH8 477 aa21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 TMPOP42166 694 aaKnown RBP21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 LMOD3Q0VAK6 560 aa21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 PRPF40BQ6NWY9 871 aaKnown RBP21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 NGEFQ8N5V2 710 aa21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 TSPYL4Q9UJ04 414 aa21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 RRP7AQ9Y3A4 280 aaKnown RBP21.81■■□□□ 1.08
CCDC28B-204ENST00000469003 LTBP3Q9NS15 1303 aa21.8■■□□□ 1.08
CCDC28B-204ENST00000469003 KLRG2A4D1S0 409 aaPredicted RBP21.8■■□□□ 1.08
CCDC28B-204ENST00000469003 FSTL1Q12841 308 aa21.8■■□□□ 1.08
CCDC28B-204ENST00000469003 SOGA3Q5TF21 947 aa21.8■■□□□ 1.08
CCDC28B-204ENST00000469003 BABAM1Q9NWV8 329 aa21.8■■□□□ 1.08
CCDC28B-204ENST00000469003 ERBB4Q15303 1308 aa21.8■■□□□ 1.08
CCDC28B-204ENST00000469003 MAP3K15Q6ZN16 1313 aa21.8■■□□□ 1.08
CCDC28B-204ENST00000469003 NPR1P16066 1061 aa21.79■■□□□ 1.08
CCDC28B-204ENST00000469003 KIF6Q6ZMV9 814 aa21.79■■□□□ 1.08
CCDC28B-204ENST00000469003 PCNTO95613 3336 aa21.78■■□□□ 1.08
CCDC28B-204ENST00000469003 FAM177BA6PVY3 158 aa21.78■■□□□ 1.08
CCDC28B-204ENST00000469003 MYL6BP14649 208 aa21.78■■□□□ 1.08
CCDC28B-204ENST00000469003 TTLL7Q6ZT98 887 aa21.78■■□□□ 1.08
CCDC28B-204ENST00000469003 JMYQ8N9B5 988 aa21.78■■□□□ 1.08
CCDC28B-204ENST00000469003 TAOK3Q9H2K8 898 aa21.78■■□□□ 1.08
CCDC28B-204ENST00000469003 GTF2E1P29083 439 aaPredicted RBP21.76■■□□□ 1.07
CCDC28B-204ENST00000469003 ERFEQ4G0M1 354 aa21.76■■□□□ 1.07
CCDC28B-204ENST00000469003 TNS4Q8IZW8 715 aa21.76■■□□□ 1.07
CCDC28B-204ENST00000469003 NYXQ9GZU5 481 aa21.76■■□□□ 1.07
CCDC28B-204ENST00000469003 VEGFAP15692 232 aaPredicted RBP21.75■■□□□ 1.07
CCDC28B-204ENST00000469003 WDR43Q15061 677 aaKnown RBP eCLIP21.75■■□□□ 1.07
CCDC28B-204ENST00000469003 CCDC146Q8IYE0 955 aa21.75■■□□□ 1.07
CCDC28B-204ENST00000469003 C7orf43Q8WVR3 580 aa21.75■■□□□ 1.07
CCDC28B-204ENST00000469003 DPY19L2Q6NUT2 758 aa21.74■■□□□ 1.07
CCDC28B-204ENST00000469003 RUNDC1Q96C34 613 aa21.74■■□□□ 1.07
CCDC28B-204ENST00000469003 ZBTB3Q9H5J0 574 aa21.74■■□□□ 1.07
CCDC28B-204ENST00000469003 IBTKQ9P2D0 1353 aaPredicted RBP21.74■■□□□ 1.07
CCDC28B-204ENST00000469003 CCDC93Q567U6 631 aa21.73■■□□□ 1.07
CCDC28B-204ENST00000469003 ABCC12Q96J65 1359 aa21.73■■□□□ 1.07
CCDC28B-204ENST00000469003 EIF2S2P20042 333 aaKnown RBP21.72■■□□□ 1.07
CCDC28B-204ENST00000469003 NEUROD2Q15784 382 aa21.72■■□□□ 1.07
CCDC28B-204ENST00000469003 GIGYF2Q6Y7W6 1299 aaKnown RBP21.72■■□□□ 1.07
CCDC28B-204ENST00000469003 LRP10Q7Z4F1 713 aa21.72■■□□□ 1.07
CCDC28B-204ENST00000469003 SMC1BQ8NDV3 1235 aa21.72■■□□□ 1.07
CCDC28B-204ENST00000469003 UBN2Q6ZU65 1347 aa21.72■■□□□ 1.07
CCDC28B-204ENST00000469003 RIC1Q4ADV7 1423 aa21.72■■□□□ 1.07
CCDC28B-204ENST00000469003 GPTP24298 496 aa21.71■■□□□ 1.07
CCDC28B-204ENST00000469003 ALDH1B1P30837 517 aa21.71■■□□□ 1.07
CCDC28B-204ENST00000469003 PDIA6Q15084 440 aa21.71■■□□□ 1.07
CCDC28B-204ENST00000469003 NUTM1Q86Y26 1132 aa21.71■■□□□ 1.07
CCDC28B-204ENST00000469003 ZNF34Q8IZ26 560 aa21.71■■□□□ 1.07
CCDC28B-204ENST00000469003 PRKRIP1Q9H875 184 aaPredicted RBP21.71■■□□□ 1.07
CCDC28B-204ENST00000469003 CRY2Q49AN0 593 aa21.7■■□□□ 1.06
CCDC28B-204ENST00000469003 ADAMTS8Q9UP79 889 aa21.7■■□□□ 1.06
CCDC28B-204ENST00000469003 TRIM35Q9UPQ4 493 aa21.7■■□□□ 1.06
CCDC28B-204ENST00000469003 POTECB2RU33 542 aa21.69■■□□□ 1.06
CCDC28B-204ENST00000469003 CHL1O00533 1208 aa21.69■■□□□ 1.06
CCDC28B-204ENST00000469003 FKBP4Q02790 459 aaKnown RBP eCLIP21.69■■□□□ 1.06
CCDC28B-204ENST00000469003 SUSD4Q5VX71 490 aa21.69■■□□□ 1.06
CCDC28B-204ENST00000469003 PROSER3Q2NL68 480 aa21.68■■□□□ 1.06
CCDC28B-204ENST00000469003 RTKN2Q8IZC4 609 aa21.68■■□□□ 1.06
CCDC28B-204ENST00000469003 NTSR2O95665 410 aa21.67■■□□□ 1.06
CCDC28B-204ENST00000469003 ANXA1P04083 346 aa21.67■■□□□ 1.06
CCDC28B-204ENST00000469003 PARP10Q53GL7 1025 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms