RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 HOXB7P09629 217 aa22.07■■□□□ 1.12
VPS52-215ENST00000464425 DPEP1P16444 411 aa22.07■■□□□ 1.12
VPS52-215ENST00000464425 LRP10Q7Z4F1 713 aa22.07■■□□□ 1.12
VPS52-215ENST00000464425 ZBTB3Q9H5J0 574 aa22.07■■□□□ 1.12
VPS52-215ENST00000464425 CHPF2Q9P2E5 772 aa22.07■■□□□ 1.12
VPS52-215ENST00000464425 SCN7AQ01118 1682 aa22.07■■□□□ 1.12
VPS52-215ENST00000464425 YBX3P16989 372 aaKnown RBP eCLIP22.06■■□□□ 1.127e-11■■□□□ 13.3
VPS52-215ENST00000464425 WDR63Q8IWG1 891 aa22.06■■□□□ 1.12
VPS52-215ENST00000464425 CCDC24Q8N4L8 307 aa22.06■■□□□ 1.12
VPS52-215ENST00000464425 DDX21Q9NR30 783 aaKnown RBP eCLIP22.06■■□□□ 1.12
VPS52-215ENST00000464425 UTRNP46939 3433 aa22.06■■□□□ 1.12
VPS52-215ENST00000464425 IL16Q14005 1332 aa22.06■■□□□ 1.12
VPS52-215ENST00000464425 MAP3K15Q6ZN16 1313 aa22.06■■□□□ 1.12
VPS52-215ENST00000464425 CARMIL3Q8ND23 1372 aa22.05■■□□□ 1.12
VPS52-215ENST00000464425 ERVV-1B6SEH8 477 aa22.05■■□□□ 1.12
VPS52-215ENST00000464425 AIMP1Q12904 312 aaKnown RBP22.05■■□□□ 1.12
VPS52-215ENST00000464425 NIP7Q9Y221 180 aaKnown RBP eCLIP22.05■■□□□ 1.12
VPS52-215ENST00000464425 PXDNLA1KZ92 1463 aa22.04■■□□□ 1.12
VPS52-215ENST00000464425 NPHP1O15259 732 aa22.04■■□□□ 1.12
VPS52-215ENST00000464425 COPS6Q7L5N1 327 aa22.04■■□□□ 1.12
VPS52-215ENST00000464425 TSPYL6Q8N831 410 aa22.04■■□□□ 1.12
VPS52-215ENST00000464425 XAGE3Q8WTP9 111 aa22.04■■□□□ 1.12
VPS52-215ENST00000464425 FAM177BA6PVY3 158 aa22.03■■□□□ 1.12
VPS52-215ENST00000464425 CHRNA5P30532 468 aa22.03■■□□□ 1.12
VPS52-215ENST00000464425 DBF4Q9UBU7 674 aaPredicted RBP22.03■■□□□ 1.12
VPS52-215ENST00000464425 BCORQ6W2J9 1755 aa22.02■■□□□ 1.12
VPS52-215ENST00000464425 RGL2O15211 777 aa22.02■■□□□ 1.12
VPS52-215ENST00000464425 PRR5LQ6MZQ0 368 aa22.02■■□□□ 1.12
VPS52-215ENST00000464425 NBPF5PQ86XG9 351 aaPredicted RBP22.02■■□□□ 1.12
VPS52-215ENST00000464425 CNBD1Q8NA66 436 aa22.02■■□□□ 1.12
VPS52-215ENST00000464425 AFDNP55196 1824 aaKnown RBP22.01■■□□□ 1.11
VPS52-215ENST00000464425 KIF13BQ9NQT8 1826 aa22.01■■□□□ 1.11
VPS52-215ENST00000464425 KCNA3P22001 575 aa22.01■■□□□ 1.11
VPS52-215ENST00000464425 SPINK5Q9NQ38 1064 aaPredicted RBP22.01■■□□□ 1.11
VPS52-215ENST00000464425 FANCIQ9NVI1 1328 aa22.01■■□□□ 1.11
VPS52-215ENST00000464425 GPTP24298 496 aa22■■□□□ 1.11
VPS52-215ENST00000464425 N4BP2Q86UW6 1770 aaPredicted RBP21.99■■□□□ 1.11
VPS52-215ENST00000464425 GRIN3BO60391 1043 aa21.99■■□□□ 1.11
VPS52-215ENST00000464425 HYPKQ9NX55 129 aa21.99■■□□□ 1.11
VPS52-215ENST00000464425 BCS1LQ9Y276 419 aa21.99■■□□□ 1.11
VPS52-215ENST00000464425 NRXN2Q9P2S2 1712 aa21.98■■□□□ 1.11
VPS52-215ENST00000464425 ST5P78524 1137 aa21.98■■□□□ 1.11
VPS52-215ENST00000464425 TPTE2Q6XPS3 522 aa21.98■■□□□ 1.11
VPS52-215ENST00000464425 GIGYF2Q6Y7W6 1299 aaKnown RBP21.98■■□□□ 1.11
VPS52-215ENST00000464425 C2CD5Q86YS7 1000 aa21.98■■□□□ 1.11
VPS52-215ENST00000464425 PIM2Q9P1W9 311 aa21.98■■□□□ 1.11
VPS52-215ENST00000464425 TCERG1O14776 1098 aaKnown RBP21.97■■□□□ 1.11
VPS52-215ENST00000464425 GOLGA2Q08379 1002 aa21.97■■□□□ 1.11
VPS52-215ENST00000464425 TWISTNBQ3B726 338 aaPredicted RBP21.97■■□□□ 1.11
VPS52-215ENST00000464425 CCDC30Q5VVM6 783 aa21.97■■□□□ 1.11
VPS52-215ENST00000464425 BRIP1Q9BX63 1249 aa21.97■■□□□ 1.11
VPS52-215ENST00000464425 KIAA1551Q9HCM1 1747 aa21.97■■□□□ 1.11
VPS52-215ENST00000464425 H0YIN7 160 aa21.96■■□□□ 1.11
VPS52-215ENST00000464425 GTF2E1P29083 439 aaPredicted RBP21.96■■□□□ 1.11
VPS52-215ENST00000464425 EXOSC9Q06265 439 aaKnown RBP21.96■■□□□ 1.11
VPS52-215ENST00000464425 ZNF34Q8IZ26 560 aa21.96■■□□□ 1.11
VPS52-215ENST00000464425 PDE6BP35913 854 aa21.95■■□□□ 1.1
VPS52-215ENST00000464425 DALRD3Q5D0E6 543 aaKnown RBP21.95■■□□□ 1.1
VPS52-215ENST00000464425 ANKRD13DQ6ZTN6 518 aa21.95■■□□□ 1.1
VPS52-215ENST00000464425 CHMP4AQ9BY43 222 aa21.95■■□□□ 1.1
VPS52-215ENST00000464425 MYH16Q9H6N6 1097 aa21.95■■□□□ 1.1
VPS52-215ENST00000464425 PHAXQ9H814 394 aaKnown RBP21.95■■□□□ 1.1
VPS52-215ENST00000464425 UBN2Q6ZU65 1347 aa21.95■■□□□ 1.1
VPS52-215ENST00000464425 ZNF521Q96K83 1311 aa21.95■■□□□ 1.1
VPS52-215ENST00000464425 ATP10DQ9P241 1426 aa21.95■■□□□ 1.1
VPS52-215ENST00000464425 NUP98P52948 1817 aa21.94■■□□□ 1.1
VPS52-215ENST00000464425 YY1P25490 414 aa21.94■■□□□ 1.1
VPS52-215ENST00000464425 SUSD4Q5VX71 490 aa21.94■■□□□ 1.1
VPS52-215ENST00000464425 NUTM1Q86Y26 1132 aa21.93■■□□□ 1.1
VPS52-215ENST00000464425 PLBD2Q8NHP8 589 aa21.93■■□□□ 1.1
VPS52-215ENST00000464425 TCIRG1Q13488 830 aa21.92■■□□□ 1.1
VPS52-215ENST00000464425 HSP90AB3PQ58FF7 597 aa21.92■■□□□ 1.1
VPS52-215ENST00000464425 ZNF622Q969S3 477 aaKnown RBP eCLIP21.92■■□□□ 1.18e-7■□□□□ 10.9
VPS52-215ENST00000464425 ZNF428Q96B54 188 aa21.92■■□□□ 1.1
VPS52-215ENST00000464425 NYXQ9GZU5 481 aa21.92■■□□□ 1.1
VPS52-215ENST00000464425 VAMP4O75379 141 aa21.91■■□□□ 1.1
VPS52-215ENST00000464425 ERFEQ4G0M1 354 aa21.91■■□□□ 1.1
VPS52-215ENST00000464425 STK31Q9BXU1 1019 aa21.91■■□□□ 1.1
VPS52-215ENST00000464425 PARP10Q53GL7 1025 aa21.9■■□□□ 1.1
VPS52-215ENST00000464425 RIC3Q7Z5B4 369 aa21.9■■□□□ 1.1
VPS52-215ENST00000464425 SLC4A2P04920 1241 aa21.89■■□□□ 1.09
VPS52-215ENST00000464425 ARHGAP27Q6ZUM4 889 aa21.89■■□□□ 1.09
VPS52-215ENST00000464425 PPP1R42Q7Z4L9 355 aa21.89■■□□□ 1.09
VPS52-215ENST00000464425 TTLL6Q8N841 843 aa21.89■■□□□ 1.09
VPS52-215ENST00000464425 UTP14AQ9BVJ6 771 aaKnown RBP21.89■■□□□ 1.09
VPS52-215ENST00000464425 PDZRN3Q9UPQ7 1066 aa21.89■■□□□ 1.09
VPS52-215ENST00000464425 ANKRD31Q8N7Z5 1873 aa21.89■■□□□ 1.09
VPS52-215ENST00000464425 ATP5J2-PTCD1G3V325 749 aa21.88■■□□□ 1.09
VPS52-215ENST00000464425 NTSR2O95665 410 aa21.88■■□□□ 1.09
VPS52-215ENST00000464425 HNRNPUQ00839 825 aaKnown RBP eCLIP21.88■■□□□ 1.09
VPS52-215ENST00000464425 NLRP10Q86W26 655 aa21.88■■□□□ 1.09
VPS52-215ENST00000464425 SRGNP10124 158 aa21.87■■□□□ 1.09
VPS52-215ENST00000464425 G2E3Q7L622 706 aa21.87■■□□□ 1.09
VPS52-215ENST00000464425 CDCA7LQ96GN5 454 aa21.87■■□□□ 1.09
VPS52-215ENST00000464425 ABCC12Q96J65 1359 aa21.87■■□□□ 1.09
VPS52-215ENST00000464425 BRCA1P38398 1863 aaKnown RBP21.86■■□□□ 1.09
VPS52-215ENST00000464425 E9PSI1 815 aa21.86■■□□□ 1.09
VPS52-215ENST00000464425 MASTLQ96GX5 879 aa21.86■■□□□ 1.09
VPS52-215ENST00000464425 KLRG2A4D1S0 409 aaPredicted RBP21.85■■□□□ 1.09
VPS52-215ENST00000464425 DDX58O95786 925 aaKnown RBP21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms