RNA–Protein interactions for RNA: ENST00000463315.1

SEMA3D-203, Transcript of semaphorin 3D, humanhuman

TSL 2

Gene SEMA3D, Length 1,257 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-203ENST00000463315 SCN7AQ01118 1682 aa17.75■□□□□ 0.43
SEMA3D-203ENST00000463315 EIF2S2P20042 333 aaKnown RBP17.75■□□□□ 0.43
SEMA3D-203ENST00000463315 PDIA6Q15084 440 aa17.75■□□□□ 0.43
SEMA3D-203ENST00000463315 HDGFL1Q5TGJ6 251 aa17.75■□□□□ 0.43
SEMA3D-203ENST00000463315 LRP10Q7Z4F1 713 aa17.75■□□□□ 0.43
SEMA3D-203ENST00000463315 MYH16Q9H6N6 1097 aa17.75■□□□□ 0.43
SEMA3D-203ENST00000463315 DBF4Q9UBU7 674 aaPredicted RBP17.75■□□□□ 0.43
SEMA3D-203ENST00000463315 ZBTB12Q9Y330 459 aaPredicted RBP17.75■□□□□ 0.43
SEMA3D-203ENST00000463315 KRT24Q2M2I5 525 aa17.74■□□□□ 0.43
SEMA3D-203ENST00000463315 POLRMTO00411 1230 aaKnown RBP17.73■□□□□ 0.43
SEMA3D-203ENST00000463315 PIP4K2AP48426 406 aaPredicted RBP17.73■□□□□ 0.43
SEMA3D-203ENST00000463315 NFIXQ14938 502 aa17.73■□□□□ 0.43
SEMA3D-203ENST00000463315 BCORQ6W2J9 1755 aa17.72■□□□□ 0.43
SEMA3D-203ENST00000463315 MYL6BP14649 208 aa17.72■□□□□ 0.43
SEMA3D-203ENST00000463315 DDR1Q08345 913 aa17.72■□□□□ 0.43
SEMA3D-203ENST00000463315 GOLGA2Q08379 1002 aa17.72■□□□□ 0.43
SEMA3D-203ENST00000463315 KIF6Q6ZMV9 814 aa17.72■□□□□ 0.43
SEMA3D-203ENST00000463315 C8orf58Q8NAV2 365 aa17.72■□□□□ 0.43
SEMA3D-203ENST00000463315 HYPKQ9NX55 129 aa17.72■□□□□ 0.43
SEMA3D-203ENST00000463315 SALL2Q9Y467 1007 aaPredicted RBP17.72■□□□□ 0.43
SEMA3D-203ENST00000463315 MAP3K15Q6ZN16 1313 aa17.72■□□□□ 0.43
SEMA3D-203ENST00000463315 CARMIL3Q8ND23 1372 aa17.71■□□□□ 0.43
SEMA3D-203ENST00000463315 TGFB2P61812 414 aa17.71■□□□□ 0.43
SEMA3D-203ENST00000463315 CCDC30Q5VVM6 783 aa17.71■□□□□ 0.43
SEMA3D-203ENST00000463315 TSR2Q969E8 191 aaKnown RBP17.71■□□□□ 0.43
SEMA3D-203ENST00000463315 SETDB2Q96T68 719 aa17.71■□□□□ 0.43
SEMA3D-203ENST00000463315 C10orf71Q711Q0 1435 aa17.71■□□□□ 0.43
SEMA3D-203ENST00000463315 FANCIQ9NVI1 1328 aa17.71■□□□□ 0.42
SEMA3D-203ENST00000463315 TBC1D9BQ66K14 1250 aa17.7■□□□□ 0.42
SEMA3D-203ENST00000463315 SENP3-EIF4A1A0A087X0R7 540 aa17.69■□□□□ 0.42
SEMA3D-203ENST00000463315 E9PSI1 815 aa17.69■□□□□ 0.42
SEMA3D-203ENST00000463315 SERPINB2P05120 415 aa17.69■□□□□ 0.42
SEMA3D-203ENST00000463315 TWISTNBQ3B726 338 aaPredicted RBP17.69■□□□□ 0.42
SEMA3D-203ENST00000463315 GIGYF2Q6Y7W6 1299 aaKnown RBP17.69■□□□□ 0.42
SEMA3D-203ENST00000463315 CHPF2Q9P2E5 772 aa17.69■□□□□ 0.42
SEMA3D-203ENST00000463315 KIF13BQ9NQT8 1826 aa17.69■□□□□ 0.42
SEMA3D-203ENST00000463315 NRXN2Q9P2S2 1712 aa17.69■□□□□ 0.42
SEMA3D-203ENST00000463315 PROSER3Q2NL68 480 aa17.68■□□□□ 0.42
SEMA3D-203ENST00000463315 TTLL7Q6ZT98 887 aa17.68■□□□□ 0.42
SEMA3D-203ENST00000463315 COPS6Q7L5N1 327 aa17.68■□□□□ 0.42
SEMA3D-203ENST00000463315 ATP10DQ9P241 1426 aa17.68■□□□□ 0.42
SEMA3D-203ENST00000463315 PDZRN3Q9UPQ7 1066 aa17.68■□□□□ 0.42
SEMA3D-203ENST00000463315 ELL2O00472 640 aaPredicted RBP17.67■□□□□ 0.42
SEMA3D-203ENST00000463315 KLHL34Q8N239 644 aa17.67■□□□□ 0.42
SEMA3D-203ENST00000463315 TSPYL6Q8N831 410 aa17.67■□□□□ 0.42
SEMA3D-203ENST00000463315 NECTIN2Q92692 538 aa17.67■□□□□ 0.42
SEMA3D-203ENST00000463315 HLFQ16534 295 aa17.66■□□□□ 0.42
SEMA3D-203ENST00000463315 HSP90AB3PQ58FF7 597 aa17.66■□□□□ 0.42
SEMA3D-203ENST00000463315 NLGN2Q8NFZ4 835 aa17.66■□□□□ 0.42
SEMA3D-203ENST00000463315 XAGE3Q8WTP9 111 aa17.66■□□□□ 0.42
SEMA3D-203ENST00000463315 VAMP4O75379 141 aa17.65■□□□□ 0.42
SEMA3D-203ENST00000463315 TPTE2Q6XPS3 522 aa17.65■□□□□ 0.42
SEMA3D-203ENST00000463315 BICDL1Q6ZP65 573 aa17.65■□□□□ 0.42
SEMA3D-203ENST00000463315 PLBD2Q8NHP8 589 aa17.65■□□□□ 0.42
SEMA3D-203ENST00000463315 STK31Q9BXU1 1019 aa17.65■□□□□ 0.42
SEMA3D-203ENST00000463315 NIP7Q9Y221 180 aaKnown RBP eCLIP17.65■□□□□ 0.42
SEMA3D-203ENST00000463315 IBTKQ9P2D0 1353 aaPredicted RBP17.65■□□□□ 0.42
SEMA3D-203ENST00000463315 ANXA1P04083 346 aa17.64■□□□□ 0.41
SEMA3D-203ENST00000463315 SLFN5Q08AF3 891 aa17.64■□□□□ 0.41
SEMA3D-203ENST00000463315 PARP10Q53GL7 1025 aa17.64■□□□□ 0.41
SEMA3D-203ENST00000463315 ANKRD13DQ6ZTN6 518 aa17.64■□□□□ 0.41
SEMA3D-203ENST00000463315 ZNF34Q8IZ26 560 aa17.64■□□□□ 0.41
SEMA3D-203ENST00000463315 BRIP1Q9BX63 1249 aa17.64■□□□□ 0.41
SEMA3D-203ENST00000463315 NYXQ9GZU5 481 aa17.64■□□□□ 0.41
SEMA3D-203ENST00000463315 ZBTB3Q9H5J0 574 aa17.64■□□□□ 0.41
SEMA3D-203ENST00000463315 EXOSC9Q06265 439 aaKnown RBP17.63■□□□□ 0.41
SEMA3D-203ENST00000463315 NBPF5PQ86XG9 351 aaPredicted RBP17.63■□□□□ 0.41
SEMA3D-203ENST00000463315 TRMT2AQ8IZ69 625 aaKnown RBP17.63■□□□□ 0.41
SEMA3D-203ENST00000463315 CNBD1Q8NA66 436 aa17.63■□□□□ 0.41
SEMA3D-203ENST00000463315 ZNF428Q96B54 188 aa17.63■□□□□ 0.41
SEMA3D-203ENST00000463315 PXDNLA1KZ92 1463 aa17.63■□□□□ 0.41
SEMA3D-203ENST00000463315 PDE6BP35913 854 aa17.62■□□□□ 0.41
SEMA3D-203ENST00000463315 ST5P78524 1137 aa17.62■□□□□ 0.41
SEMA3D-203ENST00000463315 AIMP1Q12904 312 aaKnown RBP17.62■□□□□ 0.41
SEMA3D-203ENST00000463315 PRR5LQ6MZQ0 368 aa17.62■□□□□ 0.41
SEMA3D-203ENST00000463315 NUP98P52948 1817 aa17.62■□□□□ 0.41
SEMA3D-203ENST00000463315 AFDNP55196 1824 aaKnown RBP17.62■□□□□ 0.41
SEMA3D-203ENST00000463315 RNF123Q5XPI4 1314 aa17.62■□□□□ 0.41
SEMA3D-203ENST00000463315 DDX58O95786 925 aaKnown RBP17.61■□□□□ 0.41
SEMA3D-203ENST00000463315 TCIRG1Q13488 830 aa17.61■□□□□ 0.41
SEMA3D-203ENST00000463315 GOLGB1Q14789 3259 aaKnown RBP17.6■□□□□ 0.41
SEMA3D-203ENST00000463315 GRIN3BO60391 1043 aa17.6■□□□□ 0.41
SEMA3D-203ENST00000463315 CT47B1P0C2W7 299 aaPredicted RBP17.6■□□□□ 0.41
SEMA3D-203ENST00000463315 TRIM28Q13263 835 aaKnown RBP17.6■□□□□ 0.41
SEMA3D-203ENST00000463315 PPP1R42Q7Z4L9 355 aa17.6■□□□□ 0.41
SEMA3D-203ENST00000463315 KIAA1551Q9HCM1 1747 aa17.59■□□□□ 0.41
SEMA3D-203ENST00000463315 RIC1Q4ADV7 1423 aa17.59■□□□□ 0.41
SEMA3D-203ENST00000463315 KLRG2A4D1S0 409 aaPredicted RBP17.59■□□□□ 0.41
SEMA3D-203ENST00000463315 NPHP1O15259 732 aa17.59■□□□□ 0.41
SEMA3D-203ENST00000463315 KCNA3P22001 575 aa17.59■□□□□ 0.41
SEMA3D-203ENST00000463315 PHAXQ9H814 394 aaKnown RBP17.59■□□□□ 0.41
SEMA3D-203ENST00000463315 CACNA1FO60840 1977 aa17.59■□□□□ 0.41
SEMA3D-203ENST00000463315 UBN2Q6ZU65 1347 aa17.58■□□□□ 0.4
SEMA3D-203ENST00000463315 A0A0G2JLW4 131 aa17.58■□□□□ 0.4
SEMA3D-203ENST00000463315 H0YIN7 160 aa17.58■□□□□ 0.4
SEMA3D-203ENST00000463315 DPEP1P16444 411 aa17.58■□□□□ 0.4
SEMA3D-203ENST00000463315 GPR162Q16538 588 aa17.58■□□□□ 0.4
SEMA3D-203ENST00000463315 PIM2Q9P1W9 311 aa17.58■□□□□ 0.4
SEMA3D-203ENST00000463315 RIC3Q7Z5B4 369 aa17.57■□□□□ 0.4
SEMA3D-203ENST00000463315 ISCA1Q9BUE6 129 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms