RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 ADAMTS8Q9UP79 889 aa9.56□□□□□ -0.88
PTPRF-210ENST00000463041 RRP7AQ9Y3A4 280 aaKnown RBP9.56□□□□□ -0.88
PTPRF-210ENST00000463041 KDM3BQ7LBC6 1761 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 SENP3-EIF4A1A0A087X0R7 540 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 SRGNP10124 158 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 HLFQ16534 295 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 STYK1Q6J9G0 422 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 CCDC24Q8N4L8 307 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 NGEFQ8N5V2 710 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 MASTLQ96GX5 879 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 RNF181Q9P0P0 153 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 NIP7Q9Y221 180 aaKnown RBP eCLIP9.55□□□□□ -0.88
PTPRF-210ENST00000463041 ANKRD31Q8N7Z5 1873 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 DLEC1Q9Y238 1755 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 ERBB4Q15303 1308 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 SCN7AQ01118 1682 aa9.55□□□□□ -0.88
PTPRF-210ENST00000463041 NUP98P52948 1817 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 CEP350Q5VT06 3117 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 KLRG2A4D1S0 409 aaPredicted RBP9.54□□□□□ -0.88
PTPRF-210ENST00000463041 CHL1O00533 1208 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 KIF3CO14782 793 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 LMNB1P20700 586 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 NEUROD2Q15784 382 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 CCDC146Q8IYE0 955 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 BCORQ6W2J9 1755 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 MAP3K15Q6ZN16 1313 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 KDM2BQ8NHM5 1336 aa9.54□□□□□ -0.88
PTPRF-210ENST00000463041 ZC3H4Q9UPT8 1303 aaKnown RBP9.54□□□□□ -0.88
PTPRF-210ENST00000463041 TOMM70O94826 608 aa9.53□□□□□ -0.88
PTPRF-210ENST00000463041 MYL6BP14649 208 aa9.53□□□□□ -0.88
PTPRF-210ENST00000463041 NPR1P16066 1061 aa9.53□□□□□ -0.88
PTPRF-210ENST00000463041 GTF2E1P29083 439 aaPredicted RBP9.53□□□□□ -0.88
PTPRF-210ENST00000463041 SOGA3Q5TF21 947 aa9.53□□□□□ -0.88
PTPRF-210ENST00000463041 KIF6Q6ZMV9 814 aa9.53□□□□□ -0.88
PTPRF-210ENST00000463041 TTLL7Q6ZT98 887 aa9.53□□□□□ -0.88
PTPRF-210ENST00000463041 NYXQ9GZU5 481 aa9.53□□□□□ -0.88
PTPRF-210ENST00000463041 TRIM35Q9UPQ4 493 aa9.53□□□□□ -0.88
PTPRF-210ENST00000463041 LAMB4A4D0S4 1761 aa9.52□□□□□ -0.88
PTPRF-210ENST00000463041 SLX4Q8IY92 1834 aa9.52□□□□□ -0.89
PTPRF-210ENST00000463041 C21orf2O43822 256 aa9.52□□□□□ -0.89
PTPRF-210ENST00000463041 EIF2S2P20042 333 aaKnown RBP9.52□□□□□ -0.89
PTPRF-210ENST00000463041 ALDH1B1P30837 517 aa9.52□□□□□ -0.89
PTPRF-210ENST00000463041 GIGYF2Q6Y7W6 1299 aaKnown RBP9.52□□□□□ -0.89
PTPRF-210ENST00000463041 DICER1Q9UPY3 1922 aaKnown RBP9.51□□□□□ -0.89
PTPRF-210ENST00000463041 GLTPD2A6NH11 291 aa9.51□□□□□ -0.89
PTPRF-210ENST00000463041 FAM177BA6PVY3 158 aa9.51□□□□□ -0.89
PTPRF-210ENST00000463041 NFKBIEO00221 500 aa9.51□□□□□ -0.89
PTPRF-210ENST00000463041 RASSF7Q02833 373 aa9.51□□□□□ -0.89
PTPRF-210ENST00000463041 PDIA6Q15084 440 aa9.51□□□□□ -0.89
PTPRF-210ENST00000463041 ZNF34Q8IZ26 560 aa9.51□□□□□ -0.89
PTPRF-210ENST00000463041 C7orf43Q8WVR3 580 aa9.51□□□□□ -0.89
PTPRF-210ENST00000463041 NMRK2Q9NPI5 230 aa9.51□□□□□ -0.89
PTPRF-210ENST00000463041 LAS1LQ9Y4W2 734 aaKnown RBP9.51□□□□□ -0.89
PTPRF-210ENST00000463041 FER1L6Q2WGJ9 1857 aa9.51□□□□□ -0.89
PTPRF-210ENST00000463041 HSPA6P17066 643 aa9.5□□□□□ -0.89
PTPRF-210ENST00000463041 PARP10Q53GL7 1025 aa9.5□□□□□ -0.89
PTPRF-210ENST00000463041 DPY19L2Q6NUT2 758 aa9.5□□□□□ -0.89
PTPRF-210ENST00000463041 PRPF40BQ6NWY9 871 aaKnown RBP9.5□□□□□ -0.89
PTPRF-210ENST00000463041 LRP10Q7Z4F1 713 aa9.5□□□□□ -0.89
PTPRF-210ENST00000463041 PPP1R42Q7Z4L9 355 aa9.5□□□□□ -0.89
PTPRF-210ENST00000463041 C16orf71Q8IYS4 520 aaPredicted RBP9.5□□□□□ -0.89
PTPRF-210ENST00000463041 CFAP44Q96MT7 982 aa9.5□□□□□ -0.89
PTPRF-210ENST00000463041 ZBTB3Q9H5J0 574 aa9.5□□□□□ -0.89
PTPRF-210ENST00000463041 RRAGCQ9HB90 399 aa9.5□□□□□ -0.89
PTPRF-210ENST00000463041 DDX21Q9NR30 783 aaKnown RBP eCLIP9.5□□□□□ -0.89
PTPRF-210ENST00000463041 ZNF219Q9P2Y4 722 aaPredicted RBP9.5□□□□□ -0.89
PTPRF-210ENST00000463041 LTBP3Q9NS15 1303 aa9.5□□□□□ -0.89
PTPRF-210ENST00000463041 APAF1O14727 1248 aa9.49□□□□□ -0.89
PTPRF-210ENST00000463041 HOXB7P09629 217 aa9.49□□□□□ -0.89
PTPRF-210ENST00000463041 VEGFAP15692 232 aaPredicted RBP9.49□□□□□ -0.89
PTPRF-210ENST00000463041 PRELPP51888 382 aa9.49□□□□□ -0.89
PTPRF-210ENST00000463041 CALD1Q05682 793 aaKnown RBP9.49□□□□□ -0.89
PTPRF-210ENST00000463041 HSP90AB3PQ58FF7 597 aa9.49□□□□□ -0.89
PTPRF-210ENST00000463041 SUSD4Q5VX71 490 aa9.49□□□□□ -0.89
PTPRF-210ENST00000463041 COPS6Q7L5N1 327 aa9.49□□□□□ -0.89
PTPRF-210ENST00000463041 RTKN2Q8IZC4 609 aa9.49□□□□□ -0.89
PTPRF-210ENST00000463041 RBM46Q8TBY0 533 aaKnown RBP9.49□□□□□ -0.89
PTPRF-210ENST00000463041 TAOK3Q9H2K8 898 aa9.49□□□□□ -0.89
PTPRF-210ENST00000463041 CACNA1SQ13698 1873 aa9.49□□□□□ -0.89
PTPRF-210ENST00000463041 ZNF316A6NFI3 1004 aaPredicted RBP9.48□□□□□ -0.89
PTPRF-210ENST00000463041 ZNF853P0CG23 659 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 GPTP24298 496 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 HOXA10P31260 410 aaPredicted RBP9.48□□□□□ -0.89
PTPRF-210ENST00000463041 FSTL1Q12841 308 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 CRY2Q49AN0 593 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 ERFEQ4G0M1 354 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 GRIPAP1Q4V328 841 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 CCDC93Q567U6 631 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 SLC10A5Q5PT55 438 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 CC2D2BQ6DHV5 1058 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 NUTM1Q86Y26 1132 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 CHMP4AQ9BY43 222 aa9.48□□□□□ -0.89
PTPRF-210ENST00000463041 COL11A2P13942 1736 aaPredicted RBP9.48□□□□□ -0.89
PTPRF-210ENST00000463041 ARFGEF2Q9Y6D5 1785 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 ANXA1P04083 346 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 GNAI1P63096 354 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 AIMP1Q12904 312 aaKnown RBP9.47□□□□□ -0.89
PTPRF-210ENST00000463041 TCIRG1Q13488 830 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 PROSER3Q2NL68 480 aa9.47□□□□□ -0.89
PTPRF-210ENST00000463041 XAGE3Q8WTP9 111 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms