RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 PCDHGA11Q9Y5H2 935 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 KIAA1107Q9UPP5 1409 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 TRAPPC8Q9Y2L5 1435 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 HECW2Q9P2P5 1572 aa6.81□□□□□ -1.32
CSMD3-205ENST00000462254 ABCA6Q8N139 1617 aa6.8□□□□□ -1.32
CSMD3-205ENST00000462254 SOBPA7XYQ1 873 aa6.8□□□□□ -1.32
CSMD3-205ENST00000462254 C11orf95C9JLR9 678 aaPredicted RBP6.8□□□□□ -1.32
CSMD3-205ENST00000462254 RFX1P22670 979 aa6.8□□□□□ -1.32
CSMD3-205ENST00000462254 HNRNPMP52272 730 aaKnown RBP eCLIP6.8□□□□□ -1.32
CSMD3-205ENST00000462254 EFCAB2Q5VUJ9 269 aa6.8□□□□□ -1.32
CSMD3-205ENST00000462254 USP35Q9P2H5 1018 aa6.8□□□□□ -1.32
CSMD3-205ENST00000462254 NOD1Q9Y239 953 aa6.8□□□□□ -1.32
CSMD3-205ENST00000462254 ATP7AQ04656 1500 aa6.8□□□□□ -1.32
CSMD3-205ENST00000462254 TEX14Q8IWB6 1497 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 SOS2Q07890 1332 aaPredicted RBP6.79□□□□□ -1.32
CSMD3-205ENST00000462254 C9orf84Q5VXU9 1444 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 SCAPERQ9BY12 1400 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 MEN1O00255 615 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 LZTS3O60299 673 aaPredicted RBP6.79□□□□□ -1.32
CSMD3-205ENST00000462254 SCNN1DP51172 638 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 CLDN10P78369 228 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 ZNF787Q6DD87 383 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 SND1Q7KZF4 910 aaKnown RBP eCLIP6.79□□□□□ -1.32
CSMD3-205ENST00000462254 TRIM52Q96A61 297 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 SIRT1Q96EB6 747 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 ETNK1Q9HBU6 452 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 SENP2Q9HC62 589 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 MKRN1Q9UHC7 482 aaKnown RBP6.79□□□□□ -1.32
CSMD3-205ENST00000462254 ZMYM4Q5VZL5 1548 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 ZNF518AQ6AHZ1 1483 aa6.79□□□□□ -1.32
CSMD3-205ENST00000462254 HFM1A2PYH4 1435 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 NAIPQ13075 1403 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 POGZQ7Z3K3 1410 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 FIGNL2A6NMB9 653 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 ZBTB7BO15156 539 aaPredicted RBP6.78□□□□□ -1.32
CSMD3-205ENST00000462254 GNRH1P01148 92 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 IL2RAP01589 272 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 CSB-PGBD3P0DP91 1061 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 GTF2IP78347 998 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 CDCA8Q53HL2 280 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 POLMQ9NP87 494 aaPredicted RBP6.78□□□□□ -1.32
CSMD3-205ENST00000462254 DNMT3LQ9UJW3 386 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 KIAA1024Q9UPX6 916 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 SIGLEC1Q9BZZ2 1709 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 DIP2CQ9Y2E4 1556 aa6.78□□□□□ -1.32
CSMD3-205ENST00000462254 NCOA1Q15788 1441 aa6.77□□□□□ -1.33
CSMD3-205ENST00000462254 BCORL1Q5H9F3 1711 aa6.77□□□□□ -1.33
CSMD3-205ENST00000462254 TTLL8A6PVC2 850 aa6.77□□□□□ -1.33
CSMD3-205ENST00000462254 CLN3Q13286 438 aa6.77□□□□□ -1.33
CSMD3-205ENST00000462254 CNKSR1Q969H4 720 aa6.77□□□□□ -1.33
CSMD3-205ENST00000462254 ROCK1Q13464 1354 aa6.77□□□□□ -1.33
CSMD3-205ENST00000462254 DENND4BO75064 1496 aaPredicted RBP6.77□□□□□ -1.33
CSMD3-205ENST00000462254 SETD5Q9C0A6 1442 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 DEPDC5O75140 1603 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 EIF2AK4Q9P2K8 1649 aaKnown RBP6.76□□□□□ -1.33
CSMD3-205ENST00000462254 TMEM229AB2RXF0 380 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 GDF10P55107 478 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 OGFOD1Q8N543 542 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 RNF217Q8TC41 542 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 KIFC2Q96AC6 838 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 XAGE2Q96GT9 111 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 ZNF594Q96JF6 807 aaPredicted RBP6.76□□□□□ -1.33
CSMD3-205ENST00000462254 HRH3Q9Y5N1 445 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 IVNS1ABPQ9Y6Y0 642 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 RAB3GAP2Q9H2M9 1393 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 COL17A1Q9UMD9 1497 aaPredicted RBP6.76□□□□□ -1.33
CSMD3-205ENST00000462254 UNC13BO14795 1591 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 CEP152O94986 1710 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 RTEL1-TNFRSF6BF6WH68 1400 aa6.76□□□□□ -1.33
CSMD3-205ENST00000462254 MLH3Q9UHC1 1453 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.75□□□□□ -1.33
CSMD3-205ENST00000462254 MAN1A2O60476 641 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 INHAP05111 366 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 RASA1P20936 1047 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 RNF144AP50876 292 aaPredicted RBP6.75□□□□□ -1.33
CSMD3-205ENST00000462254 SRPK2P78362 688 aaKnown RBP6.75□□□□□ -1.33
CSMD3-205ENST00000462254 PSME1Q06323 249 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 CRTC2Q53ET0 693 aaPredicted RBP6.75□□□□□ -1.33
CSMD3-205ENST00000462254 TRIM50Q86XT4 487 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 AFAP1Q8N556 730 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.75□□□□□ -1.33
CSMD3-205ENST00000462254 NLRP3Q96P20 1036 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 ESYT1Q9BSJ8 1104 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 VRTNQ9H8Y1 702 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 IGSF5Q9NSI5 407 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 RRP7BPQ9NSQ0 103 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 DNAAF2Q9NVR5 837 aaKnown RBP6.75□□□□□ -1.33
CSMD3-205ENST00000462254 SERTAD1Q9UHV2 236 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 DUOX2Q9NRD8 1548 aa6.75□□□□□ -1.33
CSMD3-205ENST00000462254 ANKRD30AQ9BXX3 1397 aa6.74□□□□□ -1.33
CSMD3-205ENST00000462254 DKK1O94907 266 aa6.74□□□□□ -1.33
CSMD3-205ENST00000462254 CENPCQ03188 943 aa6.74□□□□□ -1.33
CSMD3-205ENST00000462254 CCDC102BQ68D86 513 aa6.74□□□□□ -1.33
CSMD3-205ENST00000462254 PRICKLE2Q7Z3G6 844 aa6.74□□□□□ -1.33
CSMD3-205ENST00000462254 TPCN2Q8NHX9 752 aa6.74□□□□□ -1.33
CSMD3-205ENST00000462254 MROH1Q8NDA8 1641 aa6.74□□□□□ -1.33
CSMD3-205ENST00000462254 RNF17Q9BXT8 1623 aaKnown RBP6.74□□□□□ -1.33
CSMD3-205ENST00000462254 ARHGEF40Q8TER5 1519 aa6.74□□□□□ -1.33
CSMD3-205ENST00000462254 IQGAP3Q86VI3 1631 aa6.73□□□□□ -1.33
CSMD3-205ENST00000462254 KIF15Q9NS87 1388 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms