RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 CNTROBQ8N137 903 aa20.32■□□□□ 0.84
CCDC43-202ENST00000457422 CLASRPQ8N2M8 674 aaKnown RBP20.32■□□□□ 0.84
CCDC43-202ENST00000457422 PA2G4Q9UQ80 394 aaKnown RBP20.32■□□□□ 0.84
CCDC43-202ENST00000457422 ABCA3Q99758 1704 aa20.32■□□□□ 0.84
CCDC43-202ENST00000457422 SOS2Q07890 1332 aaPredicted RBP20.32■□□□□ 0.84
CCDC43-202ENST00000457422 NUCB2P80303 420 aa20.31■□□□□ 0.84
CCDC43-202ENST00000457422 FMNL2Q96PY5 1086 aa20.31■□□□□ 0.84
CCDC43-202ENST00000457422 GLRX3O76003 335 aaKnown RBP20.31■□□□□ 0.84
CCDC43-202ENST00000457422 SSFA2P28290 1259 aa20.31■□□□□ 0.84
CCDC43-202ENST00000457422 NEXNQ0ZGT2 675 aa20.31■□□□□ 0.84
CCDC43-202ENST00000457422 METTL22Q9BUU2 404 aaPredicted RBP20.31■□□□□ 0.84
CCDC43-202ENST00000457422 PALD1Q9ULE6 856 aa20.31■□□□□ 0.84
CCDC43-202ENST00000457422 WDR17Q8IZU2 1322 aa20.3■□□□□ 0.84
CCDC43-202ENST00000457422 CYP2E1P05181 493 aaPredicted RBP20.3■□□□□ 0.84
CCDC43-202ENST00000457422 COPS6Q7L5N1 327 aa20.3■□□□□ 0.84
CCDC43-202ENST00000457422 IL25Q9H293 177 aa20.3■□□□□ 0.84
CCDC43-202ENST00000457422 BICC1Q9H694 974 aaKnown RBP20.3■□□□□ 0.84
CCDC43-202ENST00000457422 PRDM11Q9NQV5 511 aa20.3■□□□□ 0.84
CCDC43-202ENST00000457422 NEURL1BA8MQ27 555 aa20.3■□□□□ 0.84
CCDC43-202ENST00000457422 CABP4P57796 275 aa20.3■□□□□ 0.84
CCDC43-202ENST00000457422 L1TD1Q5T7N2 865 aaKnown RBP20.3■□□□□ 0.84
CCDC43-202ENST00000457422 USP16Q9Y5T5 823 aa20.3■□□□□ 0.84
CCDC43-202ENST00000457422 ARFGEF2Q9Y6D5 1785 aa20.29■□□□□ 0.84
CCDC43-202ENST00000457422 UBR2Q8IWV8 1755 aa20.29■□□□□ 0.84
CCDC43-202ENST00000457422 SGSM2O43147 1006 aa20.29■□□□□ 0.84
CCDC43-202ENST00000457422 COL5A2P05997 1499 aaPredicted RBP20.28■□□□□ 0.84
CCDC43-202ENST00000457422 AFDNP55196 1824 aaKnown RBP20.28■□□□□ 0.84
CCDC43-202ENST00000457422 NEK4P51957 841 aa20.28■□□□□ 0.84
CCDC43-202ENST00000457422 SKOR2Q2VWA4 1001 aaPredicted RBP20.28■□□□□ 0.84
CCDC43-202ENST00000457422 MYD88Q99836 296 aa20.28■□□□□ 0.84
CCDC43-202ENST00000457422 FSD2A1L4K1 749 aa20.28■□□□□ 0.84
CCDC43-202ENST00000457422 HSPA4P34932 840 aa20.28■□□□□ 0.84
CCDC43-202ENST00000457422 PIP4K2AP48426 406 aaPredicted RBP20.28■□□□□ 0.84
CCDC43-202ENST00000457422 GCKRQ14397 625 aa20.28■□□□□ 0.84
CCDC43-202ENST00000457422 BRPF3Q9ULD4 1205 aa20.28■□□□□ 0.84
CCDC43-202ENST00000457422 ZNF335Q9H4Z2 1342 aaPredicted RBP20.27■□□□□ 0.84
CCDC43-202ENST00000457422 COL15A1P39059 1388 aa20.27■□□□□ 0.84
CCDC43-202ENST00000457422 GPATCH3Q96I76 525 aa20.27■□□□□ 0.84
CCDC43-202ENST00000457422 GZF1Q9H116 711 aaPredicted RBP20.27■□□□□ 0.84
CCDC43-202ENST00000457422 ECHDC1Q9NTX5 307 aa20.27■□□□□ 0.84
CCDC43-202ENST00000457422 RAD50Q92878 1312 aa20.27■□□□□ 0.84
CCDC43-202ENST00000457422 PCDH11XQ9BZA7 1347 aa20.27■□□□□ 0.84
CCDC43-202ENST00000457422 PCDH11YQ9BZA8 1340 aa20.27■□□□□ 0.84
CCDC43-202ENST00000457422 PAPPAQ13219 1627 aa20.27■□□□□ 0.84
CCDC43-202ENST00000457422 ANKRD13DQ6ZTN6 518 aa20.26■□□□□ 0.83
CCDC43-202ENST00000457422 SLAIN2Q9P270 581 aa20.26■□□□□ 0.83
CCDC43-202ENST00000457422 TOM1L2Q6ZVM7 507 aa20.26■□□□□ 0.83
CCDC43-202ENST00000457422 ERBB4Q15303 1308 aa20.26■□□□□ 0.83
CCDC43-202ENST00000457422 SHANK3Q9BYB0 1731 aa20.25■□□□□ 0.83
CCDC43-202ENST00000457422 BAG4O95429 457 aaKnown RBP20.25■□□□□ 0.83
CCDC43-202ENST00000457422 IFIT2P09913 472 aaKnown RBP20.25■□□□□ 0.83
CCDC43-202ENST00000457422 CUL4AQ13619 759 aa20.25■□□□□ 0.83
CCDC43-202ENST00000457422 ZGPATQ8N5A5 531 aaKnown RBP20.25■□□□□ 0.83
CCDC43-202ENST00000457422 TMX3Q96JJ7 454 aa20.25■□□□□ 0.83
CCDC43-202ENST00000457422 GOLGA6L22H0YM25 854 aa20.24■□□□□ 0.83
CCDC43-202ENST00000457422 SASH1O94885 1247 aa20.24■□□□□ 0.83
CCDC43-202ENST00000457422 G3BP1Q13283 466 aaKnown RBP eCLIP20.24■□□□□ 0.83
CCDC43-202ENST00000457422 ZCRB1Q8TBF4 217 aaKnown RBP20.24■□□□□ 0.83
CCDC43-202ENST00000457422 GOLGA6L3A6NEY3 463 aa20.23■□□□□ 0.83
CCDC43-202ENST00000457422 AACSQ86V21 672 aa20.23■□□□□ 0.83
CCDC43-202ENST00000457422 LSG1Q9H089 658 aaKnown RBP20.23■□□□□ 0.83
CCDC43-202ENST00000457422 NHSL1Q5SYE7 1610 aa20.23■□□□□ 0.83
CCDC43-202ENST00000457422 ERVV-2B6SEH9 535 aa20.23■□□□□ 0.83
CCDC43-202ENST00000457422 NKX1-1Q15270 411 aaPredicted RBP20.23■□□□□ 0.83
CCDC43-202ENST00000457422 ISY1Q9ULR0 285 aaKnown RBP20.23■□□□□ 0.83
CCDC43-202ENST00000457422 EPHA10Q5JZY3 1008 aa20.22■□□□□ 0.83
CCDC43-202ENST00000457422 INTS4Q96HW7 963 aaKnown RBP20.22■□□□□ 0.83
CCDC43-202ENST00000457422 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.22■□□□□ 0.83
CCDC43-202ENST00000457422 CARD10Q9BWT7 1032 aa20.22■□□□□ 0.83
CCDC43-202ENST00000457422 NUP188Q5SRE5 1749 aa20.21■□□□□ 0.83
CCDC43-202ENST00000457422 KCPQ6ZWJ8 1503 aa20.21■□□□□ 0.83
CCDC43-202ENST00000457422 PKP1Q13835 747 aa20.21■□□□□ 0.83
CCDC43-202ENST00000457422 RUFY2Q8WXA3 655 aa20.21■□□□□ 0.83
CCDC43-202ENST00000457422 EVI5LQ96CN4 794 aa20.21■□□□□ 0.83
CCDC43-202ENST00000457422 SIL1Q9H173 461 aa20.21■□□□□ 0.83
CCDC43-202ENST00000457422 KDM4FA0A1W2PPD8 638 aa20.2■□□□□ 0.82
CCDC43-202ENST00000457422 RABL6Q3YEC7 729 aaPredicted RBP20.2■□□□□ 0.82
CCDC43-202ENST00000457422 PLBD2Q8NHP8 589 aa20.2■□□□□ 0.82
CCDC43-202ENST00000457422 EAF2Q96CJ1 260 aaPredicted RBP20.2■□□□□ 0.82
CCDC43-202ENST00000457422 CWC27Q6UX04 472 aaKnown RBP20.2■□□□□ 0.82
CCDC43-202ENST00000457422 KLHDC4Q8TBB5 520 aa20.2■□□□□ 0.82
CCDC43-202ENST00000457422 COPRSQ9NQ92 184 aa20.2■□□□□ 0.82
CCDC43-202ENST00000457422 DIAPH3Q9NSV4 1193 aa20.2■□□□□ 0.82
CCDC43-202ENST00000457422 JARID2Q92833 1246 aaPredicted RBP20.19■□□□□ 0.82
CCDC43-202ENST00000457422 IL2RBP14784 551 aa20.18■□□□□ 0.82
CCDC43-202ENST00000457422 KIAA1211Q6ZU35 1233 aa20.18■□□□□ 0.82
CCDC43-202ENST00000457422 UPF3BQ9BZI7 483 aaKnown RBP20.18■□□□□ 0.82
CCDC43-202ENST00000457422 ZDHHC9Q9Y397 364 aa20.18■□□□□ 0.82
CCDC43-202ENST00000457422 TNS2Q63HR2 1409 aa20.18■□□□□ 0.82
CCDC43-202ENST00000457422 CCDC8Q9H0W5 538 aaPredicted RBP20.18■□□□□ 0.82
CCDC43-202ENST00000457422 TLR7Q9NYK1 1049 aaKnown RBP20.18■□□□□ 0.82
CCDC43-202ENST00000457422 SNX14Q9Y5W7 946 aa20.18■□□□□ 0.82
CCDC43-202ENST00000457422 NBPF26B4DH59 902 aa20.17■□□□□ 0.82
CCDC43-202ENST00000457422 ATP5J2-PTCD1G3V325 749 aa20.17■□□□□ 0.82
CCDC43-202ENST00000457422 PTCD1O75127 700 aaKnown RBP20.17■□□□□ 0.82
CCDC43-202ENST00000457422 RFX5P48382 616 aaPredicted RBP20.17■□□□□ 0.82
CCDC43-202ENST00000457422 NBPF14Q5TI25 921 aa20.17■□□□□ 0.82
CCDC43-202ENST00000457422 NBPF10Q6P3W6 841 aaKnown RBP20.17■□□□□ 0.82
CCDC43-202ENST00000457422 NOL8Q76FK4 1167 aaKnown RBP20.17■□□□□ 0.82
CCDC43-202ENST00000457422 NBPF15Q8N660 670 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms