RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 ZNF277Q9NRM2 450 aaPredicted RBP22.73■■□□□ 1.23
SF3B4-202ENST00000457312 SCN11AQ9UI33 1791 aa22.73■■□□□ 1.23
SF3B4-202ENST00000457312 FXR1P51114 621 aaKnown RBP eCLIP22.72■■□□□ 1.23
SF3B4-202ENST00000457312 PRR5LQ6MZQ0 368 aa22.72■■□□□ 1.23
SF3B4-202ENST00000457312 FZD9O00144 591 aa22.71■■□□□ 1.23
SF3B4-202ENST00000457312 STYK1Q6J9G0 422 aa22.71■■□□□ 1.23
SF3B4-202ENST00000457312 GPC2Q8N158 579 aa22.71■■□□□ 1.23
SF3B4-202ENST00000457312 HHIPL1Q96JK4 782 aa22.71■■□□□ 1.23
SF3B4-202ENST00000457312 FKBP4Q02790 459 aaKnown RBP eCLIP22.7■■□□□ 1.22
SF3B4-202ENST00000457312 CCDC93Q567U6 631 aa22.7■■□□□ 1.22
SF3B4-202ENST00000457312 C7orf43Q8WVR3 580 aa22.7■■□□□ 1.22
SF3B4-202ENST00000457312 ZBTB1Q9Y2K1 713 aa22.7■■□□□ 1.22
SF3B4-202ENST00000457312 MKI67P46013 3256 aaKnown RBP22.7■■□□□ 1.22
SF3B4-202ENST00000457312 ZIC5Q96T25 663 aa22.69■■□□□ 1.22
SF3B4-202ENST00000457312 WASHC2AQ641Q2 1341 aa22.68■■□□□ 1.22
SF3B4-202ENST00000457312 SRGNP10124 158 aa22.68■■□□□ 1.22
SF3B4-202ENST00000457312 CYP19A1P11511 503 aaPredicted RBP22.68■■□□□ 1.22
SF3B4-202ENST00000457312 AKAP11Q9UKA4 1901 aa22.68■■□□□ 1.22
SF3B4-202ENST00000457312 PPM1GO15355 546 aaPredicted RBP22.67■■□□□ 1.22
SF3B4-202ENST00000457312 COL4A5P29400 1685 aa22.66■■□□□ 1.22
SF3B4-202ENST00000457312 TBC1D9BQ66K14 1250 aa22.66■■□□□ 1.22
SF3B4-202ENST00000457312 NFATC2IPQ8NCF5 419 aa22.66■■□□□ 1.22
SF3B4-202ENST00000457312 CARD11Q9BXL7 1154 aa22.66■■□□□ 1.22
SF3B4-202ENST00000457312 CELF2O95319 508 aaKnown RBP22.65■■□□□ 1.22
SF3B4-202ENST00000457312 ZNF530Q6P9A1 599 aaPredicted RBP22.65■■□□□ 1.22
SF3B4-202ENST00000457312 MASTLQ96GX5 879 aa22.65■■□□□ 1.22
SF3B4-202ENST00000457312 DLL1O00548 723 aa22.64■■□□□ 1.21
SF3B4-202ENST00000457312 LMOD1P29536 600 aaPredicted RBP22.64■■□□□ 1.21
SF3B4-202ENST00000457312 EPS15P42566 896 aa22.64■■□□□ 1.21
SF3B4-202ENST00000457312 SCNN1DP51172 638 aa22.64■■□□□ 1.21
SF3B4-202ENST00000457312 NOGQ13253 232 aa22.64■■□□□ 1.21
SF3B4-202ENST00000457312 HPS5Q9UPZ3 1129 aa22.64■■□□□ 1.21
SF3B4-202ENST00000457312 IARSP41252 1262 aaKnown RBP22.63■■□□□ 1.21
SF3B4-202ENST00000457312 CTU1Q7Z7A3 348 aaKnown RBP22.63■■□□□ 1.21
SF3B4-202ENST00000457312 SAGE1Q9NXZ1 904 aa22.63■■□□□ 1.21
SF3B4-202ENST00000457312 SZT2Q5T011 3432 aa22.63■■□□□ 1.21
SF3B4-202ENST00000457312 OLFM4Q6UX06 510 aa22.62■■□□□ 1.21
SF3B4-202ENST00000457312 ST20-MTHFSA0A0A6YYL1 179 aa22.61■■□□□ 1.21
SF3B4-202ENST00000457312 MTHFSP49914 203 aa22.61■■□□□ 1.21
SF3B4-202ENST00000457312 TESK2Q96S53 571 aa22.61■■□□□ 1.21
SF3B4-202ENST00000457312 TRIOBPQ9H2D6 2365 aa22.61■■□□□ 1.21
SF3B4-202ENST00000457312 USP50Q70EL3 339 aaPredicted RBP22.6■■□□□ 1.21
SF3B4-202ENST00000457312 GJA3Q9Y6H8 435 aa22.6■■□□□ 1.21
SF3B4-202ENST00000457312 SNED1Q8TER0 1413 aa22.59■■□□□ 1.21
SF3B4-202ENST00000457312 PLEKHO1Q53GL0 409 aaPredicted RBP22.59■■□□□ 1.21
SF3B4-202ENST00000457312 CNBD1Q8NA66 436 aa22.59■■□□□ 1.21
SF3B4-202ENST00000457312 EIF4A2Q14240 407 aaKnown RBP22.58■■□□□ 1.21
SF3B4-202ENST00000457312 UBR2Q8IWV8 1755 aa22.58■■□□□ 1.2
SF3B4-202ENST00000457312 MRC1P22897 1456 aa22.56■■□□□ 1.2
SF3B4-202ENST00000457312 RTKN2Q8IZC4 609 aa22.56■■□□□ 1.2
SF3B4-202ENST00000457312 GLIS2Q9BZE0 524 aaPredicted RBP22.56■■□□□ 1.2
SF3B4-202ENST00000457312 ST5P78524 1137 aa22.55■■□□□ 1.2
SF3B4-202ENST00000457312 CANXP27824 592 aaKnown RBP22.54■■□□□ 1.2
SF3B4-202ENST00000457312 EIF5P55010 431 aaKnown RBP22.54■■□□□ 1.2
SF3B4-202ENST00000457312 EIF6P56537 245 aaKnown RBP22.54■■□□□ 1.2
SF3B4-202ENST00000457312 AKAP4Q5JQC9 854 aa22.54■■□□□ 1.2
SF3B4-202ENST00000457312 SYNE4Q8N205 404 aa22.54■■□□□ 1.2
SF3B4-202ENST00000457312 ZNF408Q9H9D4 720 aa22.54■■□□□ 1.2
SF3B4-202ENST00000457312 A0A0C4DFX4 3053 aa22.53■■□□□ 1.2
SF3B4-202ENST00000457312 AMOTQ4VCS5 1084 aa22.53■■□□□ 1.2
SF3B4-202ENST00000457312 C1orf141Q5JVX7 400 aa22.53■■□□□ 1.2
SF3B4-202ENST00000457312 JDP2Q8WYK2 163 aa22.53■■□□□ 1.2
SF3B4-202ENST00000457312 RNF186Q9NXI6 227 aa22.53■■□□□ 1.2
SF3B4-202ENST00000457312 FAM155AB1AL88 458 aaPredicted RBP22.52■■□□□ 1.2
SF3B4-202ENST00000457312 NPHP1O15259 732 aa22.52■■□□□ 1.2
SF3B4-202ENST00000457312 TRPA1O75762 1119 aa22.52■■□□□ 1.2
SF3B4-202ENST00000457312 CEP290O15078 2479 aa22.51■■□□□ 1.19
SF3B4-202ENST00000457312 A0A087WZG4 1122 aa22.51■■□□□ 1.19
SF3B4-202ENST00000457312 NPR1P16066 1061 aa22.5■■□□□ 1.19
SF3B4-202ENST00000457312 SLC39A6Q13433 755 aa22.5■■□□□ 1.19
SF3B4-202ENST00000457312 POLKQ9UBT6 870 aa22.5■■□□□ 1.19
SF3B4-202ENST00000457312 HUNKP57058 714 aa22.49■■□□□ 1.19
SF3B4-202ENST00000457312 SIN3AQ96ST3 1273 aa22.49■■□□□ 1.19
SF3B4-202ENST00000457312 PSMD1Q99460 953 aa22.49■■□□□ 1.19
SF3B4-202ENST00000457312 ADARB2Q9NS39 739 aaKnown RBP22.49■■□□□ 1.19
SF3B4-202ENST00000457312 SLC52A2Q9HAB3 445 aa22.48■■□□□ 1.19
SF3B4-202ENST00000457312 KIF23Q02241 960 aaPredicted RBP22.47■■□□□ 1.19
SF3B4-202ENST00000457312 PKN2Q16513 984 aaKnown RBP22.47■■□□□ 1.19
SF3B4-202ENST00000457312 SETDB2Q96T68 719 aa22.47■■□□□ 1.19
SF3B4-202ENST00000457312 TBC1D2BQ9UPU7 963 aa22.47■■□□□ 1.19
SF3B4-202ENST00000457312 KIAA0100Q14667 2235 aaKnown RBP22.46■■□□□ 1.19
SF3B4-202ENST00000457312 GPRC5DQ9NZD1 345 aa22.46■■□□□ 1.19
SF3B4-202ENST00000457312 RBBP6Q7Z6E9 1792 aaKnown RBP22.45■■□□□ 1.19
SF3B4-202ENST00000457312 VSIG10Q8N0Z9 540 aa22.45■■□□□ 1.18
SF3B4-202ENST00000457312 PGAP2Q9UHJ9 254 aa22.45■■□□□ 1.18
SF3B4-202ENST00000457312 HTTP42858 3142 aa22.44■■□□□ 1.18
SF3B4-202ENST00000457312 KLRG2A4D1S0 409 aaPredicted RBP22.44■■□□□ 1.18
SF3B4-202ENST00000457312 RGMBQ6NW40 437 aa22.44■■□□□ 1.18
SF3B4-202ENST00000457312 SLC17A8Q8NDX2 589 aa22.44■■□□□ 1.18
SF3B4-202ENST00000457312 CARD14Q9BXL6 1004 aa22.44■■□□□ 1.18
SF3B4-202ENST00000457312 AEBP1Q8IUX7 1158 aa22.43■■□□□ 1.18
SF3B4-202ENST00000457312 CAMTA2O94983 1202 aa22.42■■□□□ 1.18
SF3B4-202ENST00000457312 COL6A3P12111 3177 aa22.42■■□□□ 1.18
SF3B4-202ENST00000457312 PAPPA2Q9BXP8 1791 aa22.41■■□□□ 1.18
SF3B4-202ENST00000457312 ZNF330Q9Y3S2 320 aaPredicted RBP22.41■■□□□ 1.18
SF3B4-202ENST00000457312 LARGE2Q8N3Y3 721 aa22.4■■□□□ 1.18
SF3B4-202ENST00000457312 COLQQ9Y215 455 aaPredicted RBP22.4■■□□□ 1.18
SF3B4-202ENST00000457312 BRCA2P51587 3418 aa22.4■■□□□ 1.18
SF3B4-202ENST00000457312 POLR2AP24928 1970 aaKnown RBP22.39■■□□□ 1.18
SF3B4-202ENST00000457312 CDC37L1Q7L3B6 337 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms