RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 ZEB1P37275 1124 aaPredicted RBP21.61■■□□□ 1.05
NCKIPSD-208ENST00000454134 HLFQ16534 295 aa21.61■■□□□ 1.05
NCKIPSD-208ENST00000454134 ZNF622Q969S3 477 aaKnown RBP eCLIP21.61■■□□□ 1.058e-7■□□□□ 8.8
NCKIPSD-208ENST00000454134 PDE6BP35913 854 aa21.6■■□□□ 1.05
NCKIPSD-208ENST00000454134 NBPF5PQ86XG9 351 aaPredicted RBP21.6■■□□□ 1.05
NCKIPSD-208ENST00000454134 NIP7Q9Y221 180 aaKnown RBP eCLIP21.6■■□□□ 1.05
NCKIPSD-208ENST00000454134 COL11A2P13942 1736 aaPredicted RBP21.6■■□□□ 1.05
NCKIPSD-208ENST00000454134 FAM177BA6PVY3 158 aa21.59■■□□□ 1.05
NCKIPSD-208ENST00000454134 ST5P78524 1137 aa21.59■■□□□ 1.05
NCKIPSD-208ENST00000454134 RASSF7Q02833 373 aa21.59■■□□□ 1.05
NCKIPSD-208ENST00000454134 TRIM35Q9UPQ4 493 aa21.59■■□□□ 1.05
NCKIPSD-208ENST00000454134 TTLL7Q6ZT98 887 aa21.58■■□□□ 1.05
NCKIPSD-208ENST00000454134 RNF181Q9P0P0 153 aa21.58■■□□□ 1.05
NCKIPSD-208ENST00000454134 SENP3-EIF4A1A0A087X0R7 540 aa21.57■■□□□ 1.04
NCKIPSD-208ENST00000454134 ZNF219Q9P2Y4 722 aaPredicted RBP21.57■■□□□ 1.04
NCKIPSD-208ENST00000454134 LAS1LQ9Y4W2 734 aaKnown RBP21.57■■□□□ 1.04
NCKIPSD-208ENST00000454134 EIF2S2P20042 333 aaKnown RBP21.56■■□□□ 1.04
NCKIPSD-208ENST00000454134 BABAM1Q9NWV8 329 aa21.56■■□□□ 1.04
NCKIPSD-208ENST00000454134 PDZRN3Q9UPQ7 1066 aa21.56■■□□□ 1.04
NCKIPSD-208ENST00000454134 MAP3K15Q6ZN16 1313 aa21.55■■□□□ 1.04
NCKIPSD-208ENST00000454134 RGL2O15211 777 aa21.55■■□□□ 1.04
NCKIPSD-208ENST00000454134 KIF6Q6ZMV9 814 aa21.55■■□□□ 1.04
NCKIPSD-208ENST00000454134 ZBTB3Q9H5J0 574 aa21.55■■□□□ 1.04
NCKIPSD-208ENST00000454134 SBF1O95248 1867 aa21.55■■□□□ 1.04
NCKIPSD-208ENST00000454134 KIF3CO14782 793 aa21.54■■□□□ 1.04
NCKIPSD-208ENST00000454134 SRGNP10124 158 aa21.54■■□□□ 1.04
NCKIPSD-208ENST00000454134 KRT24Q2M2I5 525 aa21.54■■□□□ 1.04
NCKIPSD-208ENST00000454134 NECTIN2Q92692 538 aa21.54■■□□□ 1.04
NCKIPSD-208ENST00000454134 ERVV-1B6SEH8 477 aa21.53■■□□□ 1.04
NCKIPSD-208ENST00000454134 CHL1O00533 1208 aa21.53■■□□□ 1.04
NCKIPSD-208ENST00000454134 C21orf2O43822 256 aa21.53■■□□□ 1.04
NCKIPSD-208ENST00000454134 ANXA1P04083 346 aa21.53■■□□□ 1.04
NCKIPSD-208ENST00000454134 PRELPP51888 382 aa21.53■■□□□ 1.04
NCKIPSD-208ENST00000454134 TPTE2Q6XPS3 522 aa21.53■■□□□ 1.04
NCKIPSD-208ENST00000454134 ERBB4Q15303 1308 aa21.53■■□□□ 1.04
NCKIPSD-208ENST00000454134 NFKBIEO00221 500 aa21.52■■□□□ 1.04
NCKIPSD-208ENST00000454134 GPTP24298 496 aa21.52■■□□□ 1.04
NCKIPSD-208ENST00000454134 PDIA6Q15084 440 aa21.52■■□□□ 1.04
NCKIPSD-208ENST00000454134 PROSER3Q2NL68 480 aa21.52■■□□□ 1.04
NCKIPSD-208ENST00000454134 STYK1Q6J9G0 422 aa21.52■■□□□ 1.04
NCKIPSD-208ENST00000454134 NMRK2Q9NPI5 230 aa21.52■■□□□ 1.04
NCKIPSD-208ENST00000454134 NUP98P52948 1817 aa21.52■■□□□ 1.04
NCKIPSD-208ENST00000454134 CCDC184Q52MB2 194 aa21.51■■□□□ 1.03
NCKIPSD-208ENST00000454134 LRP10Q7Z4F1 713 aa21.51■■□□□ 1.03
NCKIPSD-208ENST00000454134 MASTLQ96GX5 879 aa21.51■■□□□ 1.03
NCKIPSD-208ENST00000454134 CACNA1SQ13698 1873 aa21.51■■□□□ 1.03
NCKIPSD-208ENST00000454134 SLX4Q8IY92 1834 aa21.5■■□□□ 1.03
NCKIPSD-208ENST00000454134 APAF1O14727 1248 aa21.5■■□□□ 1.03
NCKIPSD-208ENST00000454134 LMNB1P20700 586 aa21.5■■□□□ 1.03
NCKIPSD-208ENST00000454134 GTF2E1P29083 439 aaPredicted RBP21.5■■□□□ 1.03
NCKIPSD-208ENST00000454134 PRPF40BQ6NWY9 871 aaKnown RBP21.5■■□□□ 1.03
NCKIPSD-208ENST00000454134 CNKSR1Q969H4 720 aa21.5■■□□□ 1.03
NCKIPSD-208ENST00000454134 NUTM1Q86Y26 1132 aa21.49■■□□□ 1.03
NCKIPSD-208ENST00000454134 ZNF316A6NFI3 1004 aaPredicted RBP21.48■■□□□ 1.03
NCKIPSD-208ENST00000454134 UBN2Q6ZU65 1347 aa21.48■■□□□ 1.03
NCKIPSD-208ENST00000454134 ABCC12Q96J65 1359 aa21.48■■□□□ 1.03
NCKIPSD-208ENST00000454134 KLRG2A4D1S0 409 aaPredicted RBP21.47■■□□□ 1.03
NCKIPSD-208ENST00000454134 NPR1P16066 1061 aa21.47■■□□□ 1.03
NCKIPSD-208ENST00000454134 ERFEQ4G0M1 354 aa21.47■■□□□ 1.03
NCKIPSD-208ENST00000454134 GIGYF2Q6Y7W6 1299 aaKnown RBP21.47■■□□□ 1.03
NCKIPSD-208ENST00000454134 CCDC88AQ3V6T2 1871 aa21.47■■□□□ 1.03
NCKIPSD-208ENST00000454134 AIMP1Q12904 312 aaKnown RBP21.46■■□□□ 1.03
NCKIPSD-208ENST00000454134 SUSD4Q5VX71 490 aa21.46■■□□□ 1.03
NCKIPSD-208ENST00000454134 NYXQ9GZU5 481 aa21.46■■□□□ 1.03
NCKIPSD-208ENST00000454134 KDM2BQ8NHM5 1336 aa21.46■■□□□ 1.03
NCKIPSD-208ENST00000454134 TNRC6CQ9HCJ0 1690 aaKnown RBP21.46■■□□□ 1.03
NCKIPSD-208ENST00000454134 COPS6Q7L5N1 327 aa21.45■■□□□ 1.02
NCKIPSD-208ENST00000454134 ZNF34Q8IZ26 560 aa21.45■■□□□ 1.02
NCKIPSD-208ENST00000454134 XAGE3Q8WTP9 111 aa21.45■■□□□ 1.02
NCKIPSD-208ENST00000454134 CFAP44Q96MT7 982 aa21.45■■□□□ 1.02
NCKIPSD-208ENST00000454134 ARFGEF2Q9Y6D5 1785 aa21.45■■□□□ 1.02
NCKIPSD-208ENST00000454134 FER1L6Q2WGJ9 1857 aa21.45■■□□□ 1.02
NCKIPSD-208ENST00000454134 MBIPQ9NS73 344 aa21.44■■□□□ 1.02
NCKIPSD-208ENST00000454134 CHPF2Q9P2E5 772 aa21.44■■□□□ 1.02
NCKIPSD-208ENST00000454134 C7orf43Q8WVR3 580 aa21.43■■□□□ 1.02
NCKIPSD-208ENST00000454134 RRAGCQ9HB90 399 aa21.43■■□□□ 1.02
NCKIPSD-208ENST00000454134 DDX21Q9NR30 783 aaKnown RBP eCLIP21.43■■□□□ 1.02
NCKIPSD-208ENST00000454134 TIAM2Q8IVF5 1701 aa21.43■■□□□ 1.02
NCKIPSD-208ENST00000454134 NTSR2O95665 410 aa21.42■■□□□ 1.02
NCKIPSD-208ENST00000454134 HDGFL1Q5TGJ6 251 aa21.42■■□□□ 1.02
NCKIPSD-208ENST00000454134 OLFM4Q6UX06 510 aa21.42■■□□□ 1.02
NCKIPSD-208ENST00000454134 TAOK3Q9H2K8 898 aa21.42■■□□□ 1.02
NCKIPSD-208ENST00000454134 ZC3H4Q9UPT8 1303 aaKnown RBP21.42■■□□□ 1.02
NCKIPSD-208ENST00000454134 IBTKQ9P2D0 1353 aaPredicted RBP21.41■■□□□ 1.02
NCKIPSD-208ENST00000454134 TOMM70O94826 608 aa21.41■■□□□ 1.02
NCKIPSD-208ENST00000454134 ZNF853P0CG23 659 aa21.41■■□□□ 1.02
NCKIPSD-208ENST00000454134 DUSP27Q5VZP5 1158 aa21.41■■□□□ 1.02
NCKIPSD-208ENST00000454134 LTBP3Q9NS15 1303 aa21.4■■□□□ 1.02
NCKIPSD-208ENST00000454134 HSPA6P17066 643 aa21.4■■□□□ 1.02
NCKIPSD-208ENST00000454134 CRY2Q49AN0 593 aa21.4■■□□□ 1.02
NCKIPSD-208ENST00000454134 SOGA3Q5TF21 947 aa21.4■■□□□ 1.02
NCKIPSD-208ENST00000454134 GLTPD2A6NH11 291 aa21.39■■□□□ 1.01
NCKIPSD-208ENST00000454134 HOXB7P09629 217 aa21.39■■□□□ 1.01
NCKIPSD-208ENST00000454134 PARP10Q53GL7 1025 aa21.39■■□□□ 1.01
NCKIPSD-208ENST00000454134 CCDC93Q567U6 631 aa21.39■■□□□ 1.01
NCKIPSD-208ENST00000454134 PPP1R42Q7Z4L9 355 aa21.39■■□□□ 1.01
NCKIPSD-208ENST00000454134 C16orf71Q8IYS4 520 aaPredicted RBP21.39■■□□□ 1.01
NCKIPSD-208ENST00000454134 IFT57Q9NWB7 429 aa21.39■■□□□ 1.01
NCKIPSD-208ENST00000454134 ANP32CO43423 234 aa21.38■■□□□ 1.01
NCKIPSD-208ENST00000454134 ALDH1B1P30837 517 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms