RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 TSPYL4Q9UJ04 414 aa16.42■□□□□ 0.22
CPSF4-208ENST00000452047 FER1L6Q2WGJ9 1857 aa16.42■□□□□ 0.22
CPSF4-208ENST00000452047 WDR43Q15061 677 aaKnown RBP eCLIP16.41■□□□□ 0.22
CPSF4-208ENST00000452047 RUNDC1Q96C34 613 aa16.41■□□□□ 0.22
CPSF4-208ENST00000452047 BABAM1Q9NWV8 329 aa16.41■□□□□ 0.22
CPSF4-208ENST00000452047 ADAMTS8Q9UP79 889 aa16.41■□□□□ 0.22
CPSF4-208ENST00000452047 RRP7AQ9Y3A4 280 aaKnown RBP16.41■□□□□ 0.22
CPSF4-208ENST00000452047 CCDC88AQ3V6T2 1871 aa16.41■□□□□ 0.22
CPSF4-208ENST00000452047 SLX4Q8IY92 1834 aa16.4■□□□□ 0.22
CPSF4-208ENST00000452047 TIAM2Q8IVF5 1701 aa16.4■□□□□ 0.22
CPSF4-208ENST00000452047 SENP3-EIF4A1A0A087X0R7 540 aa16.4■□□□□ 0.22
CPSF4-208ENST00000452047 KIF3CO14782 793 aa16.4■□□□□ 0.22
CPSF4-208ENST00000452047 ST5P78524 1137 aa16.4■□□□□ 0.22
CPSF4-208ENST00000452047 RASSF7Q02833 373 aa16.4■□□□□ 0.22
CPSF4-208ENST00000452047 HLFQ16534 295 aa16.4■□□□□ 0.22
CPSF4-208ENST00000452047 ERBB4Q15303 1308 aa16.4■□□□□ 0.22
CPSF4-208ENST00000452047 PRELPP51888 382 aa16.39■□□□□ 0.21
CPSF4-208ENST00000452047 NBPF5PQ86XG9 351 aaPredicted RBP16.39■□□□□ 0.21
CPSF4-208ENST00000452047 RNF181Q9P0P0 153 aa16.39■□□□□ 0.21
CPSF4-208ENST00000452047 TRIM35Q9UPQ4 493 aa16.39■□□□□ 0.21
CPSF4-208ENST00000452047 NIP7Q9Y221 180 aaKnown RBP eCLIP16.39■□□□□ 0.21
CPSF4-208ENST00000452047 TNRC6CQ9HCJ0 1690 aaKnown RBP16.39■□□□□ 0.21
CPSF4-208ENST00000452047 ERVV-1B6SEH8 477 aa16.38■□□□□ 0.21
CPSF4-208ENST00000452047 NFKBIEO00221 500 aa16.38■□□□□ 0.21
CPSF4-208ENST00000452047 NPHP1O15259 732 aa16.38■□□□□ 0.21
CPSF4-208ENST00000452047 SRGNP10124 158 aa16.38■□□□□ 0.21
CPSF4-208ENST00000452047 NEUROD2Q15784 382 aa16.38■□□□□ 0.21
CPSF4-208ENST00000452047 TTLL7Q6ZT98 887 aa16.38■□□□□ 0.21
CPSF4-208ENST00000452047 LRP10Q7Z4F1 713 aa16.38■□□□□ 0.21
CPSF4-208ENST00000452047 ZNF622Q969S3 477 aaKnown RBP eCLIP16.38■□□□□ 0.21
CPSF4-208ENST00000452047 MAP3K15Q6ZN16 1313 aa16.38■□□□□ 0.21
CPSF4-208ENST00000452047 MYL6BP14649 208 aa16.37■□□□□ 0.21
CPSF4-208ENST00000452047 STYK1Q6J9G0 422 aa16.37■□□□□ 0.21
CPSF4-208ENST00000452047 NGEFQ8N5V2 710 aa16.37■□□□□ 0.21
CPSF4-208ENST00000452047 DICER1Q9UPY3 1922 aaKnown RBP16.37■□□□□ 0.21
CPSF4-208ENST00000452047 KLRG2A4D1S0 409 aaPredicted RBP16.36■□□□□ 0.21
CPSF4-208ENST00000452047 CHL1O00533 1208 aa16.36■□□□□ 0.21
CPSF4-208ENST00000452047 ZEB1P37275 1124 aaPredicted RBP16.36■□□□□ 0.21
CPSF4-208ENST00000452047 PDIA6Q15084 440 aa16.36■□□□□ 0.21
CPSF4-208ENST00000452047 TPTE2Q6XPS3 522 aa16.36■□□□□ 0.21
CPSF4-208ENST00000452047 NMRK2Q9NPI5 230 aa16.36■□□□□ 0.21
CPSF4-208ENST00000452047 ZC3H4Q9UPT8 1303 aaKnown RBP16.36■□□□□ 0.21
CPSF4-208ENST00000452047 LMNB1P20700 586 aa16.35■□□□□ 0.21
CPSF4-208ENST00000452047 PRPF40BQ6NWY9 871 aaKnown RBP16.35■□□□□ 0.21
CPSF4-208ENST00000452047 KIF6Q6ZMV9 814 aa16.35■□□□□ 0.21
CPSF4-208ENST00000452047 MASTLQ96GX5 879 aa16.35■□□□□ 0.21
CPSF4-208ENST00000452047 ANKRD36CQ5JPF3 1778 aa16.35■□□□□ 0.21
CPSF4-208ENST00000452047 IBTKQ9P2D0 1353 aaPredicted RBP16.35■□□□□ 0.21
CPSF4-208ENST00000452047 C21orf2O43822 256 aa16.34■□□□□ 0.21
CPSF4-208ENST00000452047 PROSER3Q2NL68 480 aa16.34■□□□□ 0.21
CPSF4-208ENST00000452047 CNKSR1Q969H4 720 aa16.34■□□□□ 0.21
CPSF4-208ENST00000452047 ZBTB3Q9H5J0 574 aa16.34■□□□□ 0.21
CPSF4-208ENST00000452047 UBN2Q6ZU65 1347 aa16.34■□□□□ 0.21
CPSF4-208ENST00000452047 ABCC12Q96J65 1359 aa16.34■□□□□ 0.21
CPSF4-208ENST00000452047 FAM177BA6PVY3 158 aa16.33■□□□□ 0.2
CPSF4-208ENST00000452047 EIF2S2P20042 333 aaKnown RBP16.33■□□□□ 0.2
CPSF4-208ENST00000452047 KRT24Q2M2I5 525 aa16.33■□□□□ 0.2
CPSF4-208ENST00000452047 KDM2BQ8NHM5 1336 aa16.33■□□□□ 0.2
CPSF4-208ENST00000452047 RIC1Q4ADV7 1423 aa16.33■□□□□ 0.2
CPSF4-208ENST00000452047 ANXA1P04083 346 aa16.32■□□□□ 0.2
CPSF4-208ENST00000452047 NPR1P16066 1061 aa16.32■□□□□ 0.2
CPSF4-208ENST00000452047 GIGYF2Q6Y7W6 1299 aaKnown RBP16.32■□□□□ 0.2
CPSF4-208ENST00000452047 C7orf43Q8WVR3 580 aa16.32■□□□□ 0.2
CPSF4-208ENST00000452047 NYXQ9GZU5 481 aa16.32■□□□□ 0.2
CPSF4-208ENST00000452047 LTBP3Q9NS15 1303 aa16.32■□□□□ 0.2
CPSF4-208ENST00000452047 ZNF219Q9P2Y4 722 aaPredicted RBP16.32■□□□□ 0.2
CPSF4-208ENST00000452047 TOMM70O94826 608 aa16.31■□□□□ 0.2
CPSF4-208ENST00000452047 NUTM1Q86Y26 1132 aa16.31■□□□□ 0.2
CPSF4-208ENST00000452047 ZNF34Q8IZ26 560 aa16.31■□□□□ 0.2
CPSF4-208ENST00000452047 APAF1O14727 1248 aa16.3■□□□□ 0.2
CPSF4-208ENST00000452047 HSPA6P17066 643 aa16.3■□□□□ 0.2
CPSF4-208ENST00000452047 GPTP24298 496 aa16.3■□□□□ 0.2
CPSF4-208ENST00000452047 CRY2Q49AN0 593 aa16.3■□□□□ 0.2
CPSF4-208ENST00000452047 CFAP44Q96MT7 982 aa16.3■□□□□ 0.2
CPSF4-208ENST00000452047 LAS1LQ9Y4W2 734 aaKnown RBP16.3■□□□□ 0.2
CPSF4-208ENST00000452047 NTSR2O95665 410 aa16.29■□□□□ 0.2
CPSF4-208ENST00000452047 GTF2E1P29083 439 aaPredicted RBP16.29■□□□□ 0.2
CPSF4-208ENST00000452047 ERFEQ4G0M1 354 aa16.29■□□□□ 0.2
CPSF4-208ENST00000452047 CCDC184Q52MB2 194 aa16.29■□□□□ 0.2
CPSF4-208ENST00000452047 SOGA3Q5TF21 947 aa16.29■□□□□ 0.2
CPSF4-208ENST00000452047 SUSD4Q5VX71 490 aa16.29■□□□□ 0.2
CPSF4-208ENST00000452047 NECTIN2Q92692 538 aa16.29■□□□□ 0.2
CPSF4-208ENST00000452047 TAOK3Q9H2K8 898 aa16.29■□□□□ 0.2
CPSF4-208ENST00000452047 SNED1Q8TER0 1413 aa16.28■□□□□ 0.2
CPSF4-208ENST00000452047 WDR90Q96KV7 1748 aa16.28■□□□□ 0.2
CPSF4-208ENST00000452047 GLTPD2A6NH11 291 aa16.28■□□□□ 0.2
CPSF4-208ENST00000452047 HOXB7P09629 217 aa16.28■□□□□ 0.2
CPSF4-208ENST00000452047 ZNF853P0CG23 659 aa16.28■□□□□ 0.2
CPSF4-208ENST00000452047 DDX21Q9NR30 783 aaKnown RBP eCLIP16.28■□□□□ 0.2
CPSF4-208ENST00000452047 PARP10Q53GL7 1025 aa16.27■□□□□ 0.2
CPSF4-208ENST00000452047 COPS6Q7L5N1 327 aa16.27■□□□□ 0.2
CPSF4-208ENST00000452047 RBM46Q8TBY0 533 aaKnown RBP16.27■□□□□ 0.2
CPSF4-208ENST00000452047 XAGE3Q8WTP9 111 aa16.27■□□□□ 0.2
CPSF4-208ENST00000452047 RRAGCQ9HB90 399 aa16.27■□□□□ 0.2
CPSF4-208ENST00000452047 MBIPQ9NS73 344 aa16.27■□□□□ 0.2
CPSF4-208ENST00000452047 CHPF2Q9P2E5 772 aa16.27■□□□□ 0.2
CPSF4-208ENST00000452047 LAMB2P55268 1798 aa16.27■□□□□ 0.2
CPSF4-208ENST00000452047 CCDC93Q567U6 631 aa16.26■□□□□ 0.19
CPSF4-208ENST00000452047 HDGFL1Q5TGJ6 251 aa16.26■□□□□ 0.19
CPSF4-208ENST00000452047 OLFM4Q6UX06 510 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms