RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 C16orf71Q8IYS4 520 aaPredicted RBP28.38■■■□□ 2.13
C9orf3-208ENST00000451893 GTF2E1P29083 439 aaPredicted RBP28.37■■■□□ 2.13
C9orf3-208ENST00000451893 ZNF219Q9P2Y4 722 aaPredicted RBP28.37■■■□□ 2.13
C9orf3-208ENST00000451893 NIP7Q9Y221 180 aaKnown RBP eCLIP28.37■■■□□ 2.13
C9orf3-208ENST00000451893 RRP7AQ9Y3A4 280 aaKnown RBP28.37■■■□□ 2.13
C9orf3-208ENST00000451893 CACNA1SQ13698 1873 aa28.36■■■□□ 2.13
C9orf3-208ENST00000451893 NBPF26B4DH59 902 aa28.36■■■□□ 2.13
C9orf3-208ENST00000451893 EIF4A1P60842 406 aaKnown RBP28.36■■■□□ 2.13
C9orf3-208ENST00000451893 RASSF7Q02833 373 aa28.36■■■□□ 2.13
C9orf3-208ENST00000451893 NEUROD2Q15784 382 aa28.36■■■□□ 2.13
C9orf3-208ENST00000451893 NBPF10Q6P3W6 841 aaKnown RBP28.36■■■□□ 2.13
C9orf3-208ENST00000451893 KIF6Q6ZMV9 814 aa28.36■■■□□ 2.13
C9orf3-208ENST00000451893 NBPF15Q8N660 670 aa28.36■■■□□ 2.13
C9orf3-208ENST00000451893 KDM2BQ8NHM5 1336 aa28.36■■■□□ 2.13
C9orf3-208ENST00000451893 SBF1O95248 1867 aa28.36■■■□□ 2.13
C9orf3-208ENST00000451893 FAM177BA6PVY3 158 aa28.35■■■□□ 2.13
C9orf3-208ENST00000451893 CCDC146Q8IYE0 955 aa28.35■■■□□ 2.13
C9orf3-208ENST00000451893 MYL6BP14649 208 aa28.34■■■□□ 2.13
C9orf3-208ENST00000451893 TPTE2Q6XPS3 522 aa28.34■■■□□ 2.13
C9orf3-208ENST00000451893 TMPOP42166 694 aaKnown RBP28.33■■■□□ 2.13
C9orf3-208ENST00000451893 CNKSR1Q969H4 720 aa28.33■■■□□ 2.13
C9orf3-208ENST00000451893 COL11A2P13942 1736 aaPredicted RBP28.32■■■□□ 2.12
C9orf3-208ENST00000451893 KIF3CO14782 793 aa28.32■■■□□ 2.12
C9orf3-208ENST00000451893 LMNB1P20700 586 aa28.32■■■□□ 2.12
C9orf3-208ENST00000451893 CCDC88AQ3V6T2 1871 aa28.32■■■□□ 2.12
C9orf3-208ENST00000451893 C21orf2O43822 256 aa28.3■■■□□ 2.12
C9orf3-208ENST00000451893 MASTLQ96GX5 879 aa28.3■■■□□ 2.12
C9orf3-208ENST00000451893 NMRK2Q9NPI5 230 aa28.3■■■□□ 2.12
C9orf3-208ENST00000451893 RGL2O15211 777 aa28.29■■■□□ 2.12
C9orf3-208ENST00000451893 EIF2S2P20042 333 aaKnown RBP28.29■■■□□ 2.12
C9orf3-208ENST00000451893 STYK1Q6J9G0 422 aa28.29■■■□□ 2.12
C9orf3-208ENST00000451893 RUNDC1Q96C34 613 aa28.29■■■□□ 2.12
C9orf3-208ENST00000451893 LAS1LQ9Y4W2 734 aaKnown RBP28.29■■■□□ 2.12
C9orf3-208ENST00000451893 TOMM70O94826 608 aa28.27■■■□□ 2.12
C9orf3-208ENST00000451893 HLFQ16534 295 aa28.27■■■□□ 2.12
C9orf3-208ENST00000451893 NYXQ9GZU5 481 aa28.27■■■□□ 2.12
C9orf3-208ENST00000451893 MAP3K15Q6ZN16 1313 aa28.26■■■□□ 2.11
C9orf3-208ENST00000451893 ZC3H4Q9UPT8 1303 aaKnown RBP28.26■■■□□ 2.11
C9orf3-208ENST00000451893 SRGNP10124 158 aa28.26■■■□□ 2.11
C9orf3-208ENST00000451893 HSPA6P17066 643 aa28.26■■■□□ 2.11
C9orf3-208ENST00000451893 SOGA3Q5TF21 947 aa28.26■■■□□ 2.11
C9orf3-208ENST00000451893 BABAM1Q9NWV8 329 aa28.26■■■□□ 2.11
C9orf3-208ENST00000451893 NUP98P52948 1817 aa28.26■■■□□ 2.11
C9orf3-208ENST00000451893 ERBB4Q15303 1308 aa28.25■■■□□ 2.11
C9orf3-208ENST00000451893 ERVV-1B6SEH8 477 aa28.25■■■□□ 2.11
C9orf3-208ENST00000451893 CCER2I3L3R5 266 aa28.25■■■□□ 2.11
C9orf3-208ENST00000451893 PRPF40BQ6NWY9 871 aaKnown RBP28.25■■■□□ 2.11
C9orf3-208ENST00000451893 ZBTB3Q9H5J0 574 aa28.25■■■□□ 2.11
C9orf3-208ENST00000451893 PRKRIP1Q9H875 184 aaPredicted RBP28.25■■■□□ 2.11
C9orf3-208ENST00000451893 TIAM2Q8IVF5 1701 aa28.25■■■□□ 2.11
C9orf3-208ENST00000451893 TNRC6CQ9HCJ0 1690 aaKnown RBP28.24■■■□□ 2.11
C9orf3-208ENST00000451893 NPR1P16066 1061 aa28.23■■■□□ 2.11
C9orf3-208ENST00000451893 TAOK3Q9H2K8 898 aa28.23■■■□□ 2.11
C9orf3-208ENST00000451893 RRAGCQ9HB90 399 aa28.23■■■□□ 2.11
C9orf3-208ENST00000451893 ARFGEF2Q9Y6D5 1785 aa28.22■■■□□ 2.11
C9orf3-208ENST00000451893 NFKBIEO00221 500 aa28.22■■■□□ 2.11
C9orf3-208ENST00000451893 TTLL7Q6ZT98 887 aa28.22■■■□□ 2.11
C9orf3-208ENST00000451893 ADAMTS8Q9UP79 889 aa28.22■■■□□ 2.11
C9orf3-208ENST00000451893 SLX4Q8IY92 1834 aa28.22■■■□□ 2.11
C9orf3-208ENST00000451893 GPTP24298 496 aa28.21■■■□□ 2.11
C9orf3-208ENST00000451893 ERFEQ4G0M1 354 aa28.2■■■□□ 2.1
C9orf3-208ENST00000451893 DPY19L2Q6NUT2 758 aa28.2■■■□□ 2.1
C9orf3-208ENST00000451893 NECTIN2Q92692 538 aa28.2■■■□□ 2.1
C9orf3-208ENST00000451893 FER1L6Q2WGJ9 1857 aa28.2■■■□□ 2.1
C9orf3-208ENST00000451893 CCDC93Q567U6 631 aa28.18■■■□□ 2.1
C9orf3-208ENST00000451893 NUTM1Q86Y26 1132 aa28.18■■■□□ 2.1
C9orf3-208ENST00000451893 ALDH1B1P30837 517 aa28.17■■■□□ 2.1
C9orf3-208ENST00000451893 RBM46Q8TBY0 533 aaKnown RBP28.17■■■□□ 2.1
C9orf3-208ENST00000451893 DICER1Q9UPY3 1922 aaKnown RBP28.16■■■□□ 2.1
C9orf3-208ENST00000451893 GLTPD2A6NH11 291 aa28.16■■■□□ 2.1
C9orf3-208ENST00000451893 PPP1R42Q7Z4L9 355 aa28.16■■■□□ 2.1
C9orf3-208ENST00000451893 RPGRQ92834 1020 aaKnown RBP28.16■■■□□ 2.1
C9orf3-208ENST00000451893 AIMP1Q12904 312 aaKnown RBP28.15■■■□□ 2.1
C9orf3-208ENST00000451893 GIGYF2Q6Y7W6 1299 aaKnown RBP28.15■■■□□ 2.1
C9orf3-208ENST00000451893 APLP1P51693 650 aa28.14■■■□□ 2.1
C9orf3-208ENST00000451893 LTBP3Q9NS15 1303 aa28.14■■■□□ 2.09
C9orf3-208ENST00000451893 ANXA1P04083 346 aa28.13■■■□□ 2.09
C9orf3-208ENST00000451893 PRELPP51888 382 aa28.13■■■□□ 2.09
C9orf3-208ENST00000451893 PARP10Q53GL7 1025 aa28.13■■■□□ 2.09
C9orf3-208ENST00000451893 TRIM35Q9UPQ4 493 aa28.13■■■□□ 2.09
C9orf3-208ENST00000451893 VEGFAP15692 232 aaPredicted RBP28.12■■■□□ 2.09
C9orf3-208ENST00000451893 CHL1O00533 1208 aa28.11■■■□□ 2.09
C9orf3-208ENST00000451893 HSP90AB3PQ58FF7 597 aa28.11■■■□□ 2.09
C9orf3-208ENST00000451893 SUSD4Q5VX71 490 aa28.11■■■□□ 2.09
C9orf3-208ENST00000451893 ABCC12Q96J65 1359 aa28.11■■■□□ 2.09
C9orf3-208ENST00000451893 IBTKQ9P2D0 1353 aaPredicted RBP28.11■■■□□ 2.09
C9orf3-208ENST00000451893 KLRG2A4D1S0 409 aaPredicted RBP28.1■■■□□ 2.09
C9orf3-208ENST00000451893 CALD1Q05682 793 aaKnown RBP28.1■■■□□ 2.09
C9orf3-208ENST00000451893 FSTL1Q12841 308 aa28.1■■■□□ 2.09
C9orf3-208ENST00000451893 HDGFL1Q5TGJ6 251 aa28.1■■■□□ 2.09
C9orf3-208ENST00000451893 RTKN2Q8IZC4 609 aa28.1■■■□□ 2.09
C9orf3-208ENST00000451893 UBN2Q6ZU65 1347 aa28.1■■■□□ 2.09
C9orf3-208ENST00000451893 PROSER3Q2NL68 480 aa28.09■■■□□ 2.09
C9orf3-208ENST00000451893 COPS6Q7L5N1 327 aa28.09■■■□□ 2.09
C9orf3-208ENST00000451893 SMC1BQ8NDV3 1235 aa28.09■■■□□ 2.09
C9orf3-208ENST00000451893 TMX4Q9H1E5 349 aaPredicted RBP28.09■■■□□ 2.09
C9orf3-208ENST00000451893 PDIA6Q15084 440 aa28.08■■■□□ 2.09
C9orf3-208ENST00000451893 ZNF34Q8IZ26 560 aa28.08■■■□□ 2.09
C9orf3-208ENST00000451893 XAGE3Q8WTP9 111 aa28.08■■■□□ 2.09
C9orf3-208ENST00000451893 RBM17Q96I25 401 aaKnown RBP28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms