RNA–Protein interactions for RNA: ENST00000451154.5

USP42-204, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 520 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-204ENST00000451154 ZNF652Q9Y2D9 606 aa35.91■■■■□ 3.34
USP42-204ENST00000451154 NBPF5PQ86XG9 351 aaPredicted RBP35.9■■■■□ 3.34
USP42-204ENST00000451154 PNISRQ8TF01 805 aaKnown RBP35.9■■■■□ 3.34
USP42-204ENST00000451154 COL11A2P13942 1736 aaPredicted RBP35.88■■■■□ 3.34
USP42-204ENST00000451154 APLP1P51693 650 aa35.88■■■■□ 3.33
USP42-204ENST00000451154 PNNQ9H307 717 aaKnown RBP35.88■■■■□ 3.33
USP42-204ENST00000451154 ZC3H4Q9UPT8 1303 aaKnown RBP35.87■■■■□ 3.33
USP42-204ENST00000451154 SRGNP10124 158 aa35.87■■■■□ 3.33
USP42-204ENST00000451154 NIP7Q9Y221 180 aaKnown RBP eCLIP35.87■■■■□ 3.33
USP42-204ENST00000451154 MAPK8IP3Q9UPT6 1336 aa35.86■■■■□ 3.33
USP42-204ENST00000451154 STYK1Q6J9G0 422 aa35.86■■■■□ 3.33
USP42-204ENST00000451154 NGEFQ8N5V2 710 aa35.86■■■■□ 3.33
USP42-204ENST00000451154 CNKSR1Q969H4 720 aa35.86■■■■□ 3.33
USP42-204ENST00000451154 EIF4A1P60842 406 aaKnown RBP35.85■■■■□ 3.33
USP42-204ENST00000451154 HLFQ16534 295 aa35.85■■■■□ 3.33
USP42-204ENST00000451154 MASTLQ96GX5 879 aa35.85■■■■□ 3.33
USP42-204ENST00000451154 GLTPD2A6NH11 291 aa35.84■■■■□ 3.33
USP42-204ENST00000451154 FAM177BA6PVY3 158 aa35.84■■■■□ 3.33
USP42-204ENST00000451154 SLX4Q8IY92 1834 aa35.84■■■■□ 3.33
USP42-204ENST00000451154 RALBP1Q15311 655 aa35.83■■■■□ 3.33
USP42-204ENST00000451154 TPTE2Q6XPS3 522 aa35.83■■■■□ 3.33
USP42-204ENST00000451154 PRPF40BQ6NWY9 871 aaKnown RBP35.82■■■■□ 3.32
USP42-204ENST00000451154 DDX10Q13206 875 aaKnown RBP35.81■■■■□ 3.32
USP42-204ENST00000451154 RRP7AQ9Y3A4 280 aaKnown RBP35.81■■■■□ 3.32
USP42-204ENST00000451154 KDM3BQ7LBC6 1761 aa35.81■■■■□ 3.32
USP42-204ENST00000451154 RGL2O15211 777 aa35.8■■■■□ 3.32
USP42-204ENST00000451154 TNRC6CQ9HCJ0 1690 aaKnown RBP35.79■■■■□ 3.32
USP42-204ENST00000451154 FSTL1Q12841 308 aa35.79■■■■□ 3.32
USP42-204ENST00000451154 CACNA1SQ13698 1873 aa35.79■■■■□ 3.32
USP42-204ENST00000451154 FER1L6Q2WGJ9 1857 aa35.79■■■■□ 3.32
USP42-204ENST00000451154 VEGFAP15692 232 aaPredicted RBP35.77■■■■□ 3.32
USP42-204ENST00000451154 RIPK4P57078 832 aa35.77■■■■□ 3.32
USP42-204ENST00000451154 ERFEQ4G0M1 354 aa35.77■■■■□ 3.32
USP42-204ENST00000451154 DNAJC5GQ8N7S2 189 aa35.77■■■■□ 3.32
USP42-204ENST00000451154 LAMB4A4D0S4 1761 aa35.76■■■■□ 3.32
USP42-204ENST00000451154 MYL6BP14649 208 aa35.76■■■■□ 3.32
USP42-204ENST00000451154 TAOK3Q9H2K8 898 aa35.76■■■■□ 3.32
USP42-204ENST00000451154 KLRG2A4D1S0 409 aaPredicted RBP35.75■■■■□ 3.31
USP42-204ENST00000451154 NPR1P16066 1061 aa35.75■■■■□ 3.31
USP42-204ENST00000451154 TTLL7Q6ZT98 887 aa35.75■■■■□ 3.31
USP42-204ENST00000451154 TIAM2Q8IVF5 1701 aa35.74■■■■□ 3.31
USP42-204ENST00000451154 ERVV-1B6SEH8 477 aa35.73■■■■□ 3.31
USP42-204ENST00000451154 GTF2E1P29083 439 aaPredicted RBP35.73■■■■□ 3.31
USP42-204ENST00000451154 HTRA3P83110 453 aa35.73■■■■□ 3.31
USP42-204ENST00000451154 DPY19L2Q6NUT2 758 aa35.73■■■■□ 3.31
USP42-204ENST00000451154 C7orf43Q8WVR3 580 aa35.73■■■■□ 3.31
USP42-204ENST00000451154 TSPYL4Q9UJ04 414 aa35.73■■■■□ 3.31
USP42-204ENST00000451154 LTBP3Q9NS15 1303 aa35.73■■■■□ 3.31
USP42-204ENST00000451154 DICER1Q9UPY3 1922 aaKnown RBP35.73■■■■□ 3.31
USP42-204ENST00000451154 SOGA3Q5TF21 947 aa35.72■■■■□ 3.31
USP42-204ENST00000451154 MAP3K15Q6ZN16 1313 aa35.72■■■■□ 3.31
USP42-204ENST00000451154 SMC1BQ8NDV3 1235 aa35.71■■■■□ 3.31
USP42-204ENST00000451154 POTECB2RU33 542 aa35.7■■■■□ 3.31
USP42-204ENST00000451154 NUP98P52948 1817 aa35.7■■■■□ 3.31
USP42-204ENST00000451154 KIF6Q6ZMV9 814 aa35.7■■■■□ 3.31
USP42-204ENST00000451154 TMPOP42166 694 aaKnown RBP35.69■■■■□ 3.3
USP42-204ENST00000451154 ARFGEF2Q9Y6D5 1785 aa35.69■■■■□ 3.3
USP42-204ENST00000451154 NUTM1Q86Y26 1132 aa35.68■■■■□ 3.3
USP42-204ENST00000451154 ZBTB3Q9H5J0 574 aa35.68■■■■□ 3.3
USP42-204ENST00000451154 OLFM4Q6UX06 510 aa35.67■■■■□ 3.3
USP42-204ENST00000451154 MYBBP1AQ9BQG0 1328 aaKnown RBP35.66■■■■□ 3.3
USP42-204ENST00000451154 GPTP24298 496 aa35.66■■■■□ 3.3
USP42-204ENST00000451154 CCDC93Q567U6 631 aa35.66■■■■□ 3.3
USP42-204ENST00000451154 CCDC146Q8IYE0 955 aa35.66■■■■□ 3.3
USP42-204ENST00000451154 NYXQ9GZU5 481 aa35.66■■■■□ 3.3
USP42-204ENST00000451154 EIF2S2P20042 333 aaKnown RBP35.65■■■■□ 3.3
USP42-204ENST00000451154 WDR90Q96KV7 1748 aa35.65■■■■□ 3.3
USP42-204ENST00000451154 NEUROD2Q15784 382 aa35.64■■■■□ 3.3
USP42-204ENST00000451154 DDNO94850 711 aaPredicted RBP35.62■■■■□ 3.29
USP42-204ENST00000451154 ALDH1B1P30837 517 aa35.62■■■■□ 3.29
USP42-204ENST00000451154 ERBB4Q15303 1308 aa35.61■■■■□ 3.29
USP42-204ENST00000451154 LMOD3Q0VAK6 560 aa35.61■■■■□ 3.29
USP42-204ENST00000451154 SUSD4Q5VX71 490 aa35.61■■■■□ 3.29
USP42-204ENST00000451154 BABAM1Q9NWV8 329 aa35.61■■■■□ 3.29
USP42-204ENST00000451154 ABCC12Q96J65 1359 aa35.61■■■■□ 3.29
USP42-204ENST00000451154 UBN2Q6ZU65 1347 aa35.6■■■■□ 3.29
USP42-204ENST00000451154 PDIA6Q15084 440 aa35.6■■■■□ 3.29
USP42-204ENST00000451154 ZNF34Q8IZ26 560 aa35.6■■■■□ 3.29
USP42-204ENST00000451154 ZNF277Q9NRM2 450 aaPredicted RBP35.6■■■■□ 3.29
USP42-204ENST00000451154 FKBP4Q02790 459 aaKnown RBP eCLIP35.59■■■■□ 3.29
USP42-204ENST00000451154 GIGYF2Q6Y7W6 1299 aaKnown RBP35.59■■■■□ 3.29
USP42-204ENST00000451154 ANXA1P04083 346 aa35.58■■■■□ 3.29
USP42-204ENST00000451154 PROSER3Q2NL68 480 aa35.58■■■■□ 3.29
USP42-204ENST00000451154 CRY2Q49AN0 593 aa35.58■■■■□ 3.29
USP42-204ENST00000451154 LRP10Q7Z4F1 713 aa35.58■■■■□ 3.29
USP42-204ENST00000451154 RTKN2Q8IZC4 609 aa35.58■■■■□ 3.29
USP42-204ENST00000451154 KLRG1Q96E93 195 aa35.57■■■■□ 3.28
USP42-204ENST00000451154 NECTIN2Q92692 538 aa35.56■■■■□ 3.28
USP42-204ENST00000451154 WDR43Q15061 677 aaKnown RBP eCLIP35.55■■■■□ 3.28
USP42-204ENST00000451154 RUNDC1Q96C34 613 aa35.55■■■■□ 3.28
USP42-204ENST00000451154 ADAMTS8Q9UP79 889 aa35.54■■■■□ 3.28
USP42-204ENST00000451154 LAS1LQ9Y4W2 734 aaKnown RBP35.54■■■■□ 3.28
USP42-204ENST00000451154 SYNE4Q8N205 404 aa35.53■■■■□ 3.28
USP42-204ENST00000451154 RPGRQ92834 1020 aaKnown RBP35.53■■■■□ 3.28
USP42-204ENST00000451154 TRIM35Q9UPQ4 493 aa35.53■■■■□ 3.28
USP42-204ENST00000451154 NTSR2O95665 410 aa35.52■■■■□ 3.28
USP42-204ENST00000451154 IFFO2Q5TF58 517 aa35.52■■■■□ 3.28
USP42-204ENST00000451154 CHL1O00533 1208 aa35.51■■■■□ 3.28
USP42-204ENST00000451154 KRT24Q2M2I5 525 aa35.51■■■■□ 3.28
USP42-204ENST00000451154 PPP1R42Q7Z4L9 355 aa35.51■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms