RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 WNK3Q9BYP7 1800 aa13.13□□□□□ -0.31
VIPAS39-203ENST00000448935 BMP2KLQ5H9B9 411 aa13.13□□□□□ -0.31
VIPAS39-203ENST00000448935 RBM42Q9BTD8 480 aaKnown RBP13.13□□□□□ -0.31
VIPAS39-203ENST00000448935 CDCA7Q9BWT1 371 aaPredicted RBP13.13□□□□□ -0.31
VIPAS39-203ENST00000448935 USP44Q9H0E7 712 aa13.13□□□□□ -0.31
VIPAS39-203ENST00000448935 DDX54Q8TDD1 881 aaKnown RBP13.12□□□□□ -0.31
VIPAS39-203ENST00000448935 DISP2A7MBM2 1401 aa13.11□□□□□ -0.31
VIPAS39-203ENST00000448935 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.11□□□□□ -0.31
VIPAS39-203ENST00000448935 LINS1Q8NG48 757 aa13.11□□□□□ -0.31
VIPAS39-203ENST00000448935 MAP3K2Q9Y2U5 619 aa13.11□□□□□ -0.31
VIPAS39-203ENST00000448935 LRP6O75581 1613 aa13.11□□□□□ -0.31
VIPAS39-203ENST00000448935 NWD2Q9ULI1 1742 aa13.11□□□□□ -0.31
VIPAS39-203ENST00000448935 PRAMEF22A3QJZ6 481 aa13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 ANXA1P04083 346 aa13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 NEXNQ0ZGT2 675 aa13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 PDIA6Q15084 440 aa13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 USP35Q9P2H5 1018 aa13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 THRAP3Q9Y2W1 955 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 LRRFIP2Q9Y608 721 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 PROSER3Q2NL68 480 aa13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 RIC3Q7Z5B4 369 aa13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 TMOD3Q9NYL9 352 aa13.1□□□□□ -0.31
VIPAS39-203ENST00000448935 NRAPQ86VF7 1730 aa13.09□□□□□ -0.31
VIPAS39-203ENST00000448935 GLI3P10071 1580 aa13.09□□□□□ -0.31
VIPAS39-203ENST00000448935 C9orf78Q9NZ63 289 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-203ENST00000448935 NOP58Q9Y2X3 529 aaKnown RBP13.09□□□□□ -0.31
VIPAS39-203ENST00000448935 TNS2Q63HR2 1409 aa13.09□□□□□ -0.31
VIPAS39-203ENST00000448935 TOGARAM1Q9Y4F4 1720 aa13.08□□□□□ -0.32
VIPAS39-203ENST00000448935 KCPQ6ZWJ8 1503 aa13.08□□□□□ -0.32
VIPAS39-203ENST00000448935 EXOC5O00471 708 aa13.08□□□□□ -0.32
VIPAS39-203ENST00000448935 HSP90AB4PQ58FF6 505 aa13.08□□□□□ -0.32
VIPAS39-203ENST00000448935 SSH3Q8TE77 659 aa13.08□□□□□ -0.32
VIPAS39-203ENST00000448935 TEX13AQ9BXU3 409 aaPredicted RBP13.08□□□□□ -0.32
VIPAS39-203ENST00000448935 USP16Q9Y5T5 823 aa13.08□□□□□ -0.32
VIPAS39-203ENST00000448935 RAB11FIP3O75154 756 aa13.07□□□□□ -0.32
VIPAS39-203ENST00000448935 MYL6BP14649 208 aa13.07□□□□□ -0.32
VIPAS39-203ENST00000448935 AIMP1Q12904 312 aaKnown RBP13.07□□□□□ -0.32
VIPAS39-203ENST00000448935 PLEKHM2Q8IWE5 1019 aa13.07□□□□□ -0.32
VIPAS39-203ENST00000448935 XAGE3Q8WTP9 111 aa13.07□□□□□ -0.32
VIPAS39-203ENST00000448935 LRRCC1Q9C099 1032 aa13.07□□□□□ -0.32
VIPAS39-203ENST00000448935 PIP4K2BP78356 416 aa13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 ANKRD13DQ6ZTN6 518 aa13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 COPS6Q7L5N1 327 aa13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 DAXXQ9UER7 740 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 ITGB4P16144 1822 aa13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 UTYO14607 1347 aa13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 PNMA6EA0A0J9YXQ4 647 aa13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 ADAMTS2O95450 1211 aa13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 NBPF7P0C2Y1 421 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 MTX1Q13505 466 aa13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 METTL22Q9BUU2 404 aaPredicted RBP13.06□□□□□ -0.32
VIPAS39-203ENST00000448935 ARFGEF2Q9Y6D5 1785 aa13.05□□□□□ -0.32
VIPAS39-203ENST00000448935 GRM8O00222 908 aa13.05□□□□□ -0.32
VIPAS39-203ENST00000448935 TTC22Q5TAA0 569 aa13.05□□□□□ -0.32
VIPAS39-203ENST00000448935 PPP1R42Q7Z4L9 355 aa13.05□□□□□ -0.32
VIPAS39-203ENST00000448935 OSBPL3Q9H4L5 887 aa13.05□□□□□ -0.32
VIPAS39-203ENST00000448935 SPATA31A1Q5TZJ5 1347 aa13.05□□□□□ -0.32
VIPAS39-203ENST00000448935 AFDNP55196 1824 aaKnown RBP13.04□□□□□ -0.32
VIPAS39-203ENST00000448935 SRGAP3O43295 1099 aa13.04□□□□□ -0.32
VIPAS39-203ENST00000448935 SEC24BO95487 1268 aa13.04□□□□□ -0.32
VIPAS39-203ENST00000448935 CACNB1Q02641 598 aaPredicted RBP13.04□□□□□ -0.32
VIPAS39-203ENST00000448935 LRP10Q7Z4F1 713 aa13.04□□□□□ -0.32
VIPAS39-203ENST00000448935 ZNF467Q7Z7K2 595 aaPredicted RBP13.04□□□□□ -0.32
VIPAS39-203ENST00000448935 PLBD2Q8NHP8 589 aa13.04□□□□□ -0.32
VIPAS39-203ENST00000448935 TBC1D32Q96NH3 1257 aa13.04□□□□□ -0.32
VIPAS39-203ENST00000448935 EXOC6BQ9Y2D4 811 aa13.04□□□□□ -0.32
VIPAS39-203ENST00000448935 SLIT2O94813 1529 aa13.03□□□□□ -0.32
VIPAS39-203ENST00000448935 APBB1O00213 710 aa13.03□□□□□ -0.32
VIPAS39-203ENST00000448935 CDC45O75419 566 aa13.03□□□□□ -0.32
VIPAS39-203ENST00000448935 REM2Q8IYK8 340 aaPredicted RBP13.03□□□□□ -0.32
VIPAS39-203ENST00000448935 JCADQ9P266 1359 aa13.03□□□□□ -0.32
VIPAS39-203ENST00000448935 NUTM2BA6NNL0 878 aaPredicted RBP13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 NEURL1BA8MQ27 555 aa13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 NUTM2EB1AL46 878 aaPredicted RBP13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 SMARCA5O60264 1052 aaPredicted RBP13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 SURF6O75683 361 aaKnown RBP13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 CWF19L2Q2TBE0 894 aaKnown RBP13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 CASC1Q6TDU7 716 aa13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 NUTM2AQ8IVF1 878 aaPredicted RBP13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 KIF1BPQ96EK5 621 aa13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 MYD88Q99836 296 aa13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 BCL9O00512 1426 aa13.02□□□□□ -0.32
VIPAS39-203ENST00000448935 PTCD1O75127 700 aaKnown RBP13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 HSPA1LP34931 641 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 GCKRQ14397 625 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 BECN1Q14457 450 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 DDB1Q16531 1140 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 BARGINQ6ZT62 677 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 ERC1Q8IUD2 1116 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 PIGBQ92521 554 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 AOX1Q06278 1338 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 SPATA31A5Q5VU36 1347 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 SPATA31A7Q8IWB4 1347 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 COL15A1P39059 1388 aa13.02□□□□□ -0.33
VIPAS39-203ENST00000448935 STARD3NLO95772 234 aa13.01□□□□□ -0.33
VIPAS39-203ENST00000448935 IGKV5-2P06315 115 aa13.01□□□□□ -0.33
VIPAS39-203ENST00000448935 MFAP1P55081 439 aaKnown RBP13.01□□□□□ -0.33
VIPAS39-203ENST00000448935 C16orf71Q8IYS4 520 aaPredicted RBP13.01□□□□□ -0.33
VIPAS39-203ENST00000448935 C22orf23Q9BZE7 217 aa13.01□□□□□ -0.33
VIPAS39-203ENST00000448935 NUP188Q5SRE5 1749 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms