RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 ST5P78524 1137 aa21.17■□□□□ 0.98
SF3A1-204ENST00000447376 KRT24Q2M2I5 525 aa21.17■□□□□ 0.98
SF3A1-204ENST00000447376 WDR63Q8IWG1 891 aa21.17■□□□□ 0.98
SF3A1-204ENST00000447376 CNBD1Q8NA66 436 aa21.17■□□□□ 0.98
SF3A1-204ENST00000447376 DBF4Q9UBU7 674 aaPredicted RBP21.17■□□□□ 0.98
SF3A1-204ENST00000447376 NIP7Q9Y221 180 aaKnown RBP eCLIP21.17■□□□□ 0.98
SF3A1-204ENST00000447376 PXDNLA1KZ92 1463 aa21.16■□□□□ 0.98
SF3A1-204ENST00000447376 A0A0G2JLW4 131 aa21.16■□□□□ 0.98
SF3A1-204ENST00000447376 NBPF5PQ86XG9 351 aaPredicted RBP21.16■□□□□ 0.98
SF3A1-204ENST00000447376 DDX21Q9NR30 783 aaKnown RBP eCLIP21.16■□□□□ 0.98
SF3A1-204ENST00000447376 GTF2E1P29083 439 aaPredicted RBP21.15■□□□□ 0.98
SF3A1-204ENST00000447376 ZBTB3Q9H5J0 574 aa21.15■□□□□ 0.98
SF3A1-204ENST00000447376 PDZRN3Q9UPQ7 1066 aa21.15■□□□□ 0.98
SF3A1-204ENST00000447376 AFDNP55196 1824 aaKnown RBP21.14■□□□□ 0.97
SF3A1-204ENST00000447376 DPEP1P16444 411 aa21.14■□□□□ 0.97
SF3A1-204ENST00000447376 TPTE2Q6XPS3 522 aa21.14■□□□□ 0.97
SF3A1-204ENST00000447376 PIM2Q9P1W9 311 aa21.14■□□□□ 0.97
SF3A1-204ENST00000447376 NRXN2Q9P2S2 1712 aa21.13■□□□□ 0.97
SF3A1-204ENST00000447376 ELL2O00472 640 aaPredicted RBP21.13■□□□□ 0.97
SF3A1-204ENST00000447376 PDE6BP35913 854 aa21.13■□□□□ 0.97
SF3A1-204ENST00000447376 AIMP1Q12904 312 aaKnown RBP21.13■□□□□ 0.97
SF3A1-204ENST00000447376 PDIA6Q15084 440 aa21.13■□□□□ 0.97
SF3A1-204ENST00000447376 TTLL7Q6ZT98 887 aa21.13■□□□□ 0.97
SF3A1-204ENST00000447376 NYXQ9GZU5 481 aa21.13■□□□□ 0.97
SF3A1-204ENST00000447376 HYPKQ9NX55 129 aa21.13■□□□□ 0.97
SF3A1-204ENST00000447376 CHPF2Q9P2E5 772 aa21.13■□□□□ 0.97
SF3A1-204ENST00000447376 WWC3Q9ULE0 1092 aa21.13■□□□□ 0.97
SF3A1-204ENST00000447376 BCS1LQ9Y276 419 aa21.13■□□□□ 0.97
SF3A1-204ENST00000447376 H0YIN7 160 aa21.12■□□□□ 0.97
SF3A1-204ENST00000447376 ANXA1P04083 346 aa21.12■□□□□ 0.97
SF3A1-204ENST00000447376 YY1P25490 414 aa21.12■□□□□ 0.97
SF3A1-204ENST00000447376 HLFQ16534 295 aa21.12■□□□□ 0.97
SF3A1-204ENST00000447376 CCDC30Q5VVM6 783 aa21.12■□□□□ 0.97
SF3A1-204ENST00000447376 PRR5LQ6MZQ0 368 aa21.12■□□□□ 0.97
SF3A1-204ENST00000447376 GIGYF2Q6Y7W6 1299 aaKnown RBP21.12■□□□□ 0.97
SF3A1-204ENST00000447376 TSR2Q969E8 191 aaKnown RBP21.12■□□□□ 0.97
SF3A1-204ENST00000447376 BRIP1Q9BX63 1249 aa21.12■□□□□ 0.97
SF3A1-204ENST00000447376 MYH16Q9H6N6 1097 aa21.12■□□□□ 0.97
SF3A1-204ENST00000447376 N4BP2Q86UW6 1770 aaPredicted RBP21.12■□□□□ 0.97
SF3A1-204ENST00000447376 YBX3P16989 372 aaKnown RBP eCLIP21.11■□□□□ 0.975e-7■■■□□ 16.4
SF3A1-204ENST00000447376 PROSER3Q2NL68 480 aa21.11■□□□□ 0.97
SF3A1-204ENST00000447376 HSP90AB3PQ58FF7 597 aa21.11■□□□□ 0.97
SF3A1-204ENST00000447376 COPS6Q7L5N1 327 aa21.11■□□□□ 0.97
SF3A1-204ENST00000447376 XAGE3Q8WTP9 111 aa21.11■□□□□ 0.97
SF3A1-204ENST00000447376 C2CD5Q86YS7 1000 aa21.1■□□□□ 0.97
SF3A1-204ENST00000447376 STK31Q9BXU1 1019 aa21.1■□□□□ 0.97
SF3A1-204ENST00000447376 ATP10DQ9P241 1426 aa21.1■□□□□ 0.97
SF3A1-204ENST00000447376 FAM177BA6PVY3 158 aa21.09■□□□□ 0.97
SF3A1-204ENST00000447376 GOLGA2Q08379 1002 aa21.09■□□□□ 0.97
SF3A1-204ENST00000447376 DALRD3Q5D0E6 543 aaKnown RBP21.09■□□□□ 0.97
SF3A1-204ENST00000447376 C8orf58Q8NAV2 365 aa21.09■□□□□ 0.97
SF3A1-204ENST00000447376 CHRNA5P30532 468 aa21.08■□□□□ 0.97
SF3A1-204ENST00000447376 TWISTNBQ3B726 338 aaPredicted RBP21.08■□□□□ 0.97
SF3A1-204ENST00000447376 PARP10Q53GL7 1025 aa21.08■□□□□ 0.97
SF3A1-204ENST00000447376 PPP1R42Q7Z4L9 355 aa21.08■□□□□ 0.97
SF3A1-204ENST00000447376 NUP98P52948 1817 aa21.08■□□□□ 0.96
SF3A1-204ENST00000447376 FANCIQ9NVI1 1328 aa21.07■□□□□ 0.96
SF3A1-204ENST00000447376 KIAA1551Q9HCM1 1747 aa21.07■□□□□ 0.96
SF3A1-204ENST00000447376 GPTP24298 496 aa21.07■□□□□ 0.96
SF3A1-204ENST00000447376 LRP10Q7Z4F1 713 aa21.07■□□□□ 0.96
SF3A1-204ENST00000447376 DDX58O95786 925 aaKnown RBP21.06■□□□□ 0.96
SF3A1-204ENST00000447376 CHD4Q14839 1912 aa21.06■□□□□ 0.96
SF3A1-204ENST00000447376 ANKRD13DQ6ZTN6 518 aa21.05■□□□□ 0.96
SF3A1-204ENST00000447376 CCDC24Q8N4L8 307 aa21.05■□□□□ 0.96
SF3A1-204ENST00000447376 PLBD2Q8NHP8 589 aa21.05■□□□□ 0.96
SF3A1-204ENST00000447376 ZNF622Q969S3 477 aaKnown RBP eCLIP21.05■□□□□ 0.963e-22■□□□□ 9.3
SF3A1-204ENST00000447376 IBTKQ9P2D0 1353 aaPredicted RBP21.05■□□□□ 0.96
SF3A1-204ENST00000447376 KCNA3P22001 575 aa21.04■□□□□ 0.96
SF3A1-204ENST00000447376 ZNF34Q8IZ26 560 aa21.04■□□□□ 0.96
SF3A1-204ENST00000447376 TTLL6Q8N841 843 aa21.04■□□□□ 0.96
SF3A1-204ENST00000447376 RIC3Q7Z5B4 369 aa21.03■□□□□ 0.96
SF3A1-204ENST00000447376 TSPYL6Q8N831 410 aa21.03■□□□□ 0.96
SF3A1-204ENST00000447376 TCIRG1Q13488 830 aa21.02■□□□□ 0.96
SF3A1-204ENST00000447376 ARHGAP27Q6ZUM4 889 aa21.02■□□□□ 0.96
SF3A1-204ENST00000447376 CNKSR1Q969H4 720 aa21.02■□□□□ 0.96
SF3A1-204ENST00000447376 UTP14AQ9BVJ6 771 aaKnown RBP21.02■□□□□ 0.96
SF3A1-204ENST00000447376 BRCA1P38398 1863 aaKnown RBP21.02■□□□□ 0.96
SF3A1-204ENST00000447376 RNF123Q5XPI4 1314 aa21.02■□□□□ 0.95
SF3A1-204ENST00000447376 DLEC1Q9Y238 1755 aa21.01■□□□□ 0.95
SF3A1-204ENST00000447376 MASTLQ96GX5 879 aa21.01■□□□□ 0.95
SF3A1-204ENST00000447376 UBN2Q6ZU65 1347 aa21.01■□□□□ 0.95
SF3A1-204ENST00000447376 EXOSC9Q06265 439 aaKnown RBP21■□□□□ 0.95
SF3A1-204ENST00000447376 STYK1Q6J9G0 422 aa21■□□□□ 0.95
SF3A1-204ENST00000447376 ANKRD31Q8N7Z5 1873 aa21■□□□□ 0.95
SF3A1-204ENST00000447376 ANKRD36CQ5JPF3 1778 aa21■□□□□ 0.95
SF3A1-204ENST00000447376 ARFGEF1Q9Y6D6 1849 aa20.99■□□□□ 0.95
SF3A1-204ENST00000447376 E9PSI1 815 aa20.99■□□□□ 0.95
SF3A1-204ENST00000447376 NPR1P16066 1061 aa20.99■□□□□ 0.95
SF3A1-204ENST00000447376 SUSD4Q5VX71 490 aa20.99■□□□□ 0.95
SF3A1-204ENST00000447376 NUTM1Q86Y26 1132 aa20.99■□□□□ 0.95
SF3A1-204ENST00000447376 PHAXQ9H814 394 aaKnown RBP20.99■□□□□ 0.95
SF3A1-204ENST00000447376 GOLGB1Q14789 3259 aaKnown RBP20.98■□□□□ 0.95
SF3A1-204ENST00000447376 SLC4A2P04920 1241 aa20.98■□□□□ 0.95
SF3A1-204ENST00000447376 SRGNP10124 158 aa20.98■□□□□ 0.95
SF3A1-204ENST00000447376 ERFEQ4G0M1 354 aa20.98■□□□□ 0.95
SF3A1-204ENST00000447376 TRMT112Q9UI30 125 aaKnown RBP20.98■□□□□ 0.95
SF3A1-204ENST00000447376 NTSR2O95665 410 aa20.97■□□□□ 0.95
SF3A1-204ENST00000447376 NLRP10Q86W26 655 aa20.97■□□□□ 0.95
SF3A1-204ENST00000447376 RPGRQ92834 1020 aaKnown RBP20.97■□□□□ 0.95
SF3A1-204ENST00000447376 ZNF521Q96K83 1311 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms