RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 ZNF521Q96K83 1311 aa23.37■■□□□ 1.33
CPSF4-205ENST00000440514 KIF6Q6ZMV9 814 aa23.36■■□□□ 1.33
CPSF4-205ENST00000440514 TSPYL6Q8N831 410 aa23.36■■□□□ 1.33
CPSF4-205ENST00000440514 NUP98P52948 1817 aa23.36■■□□□ 1.33
CPSF4-205ENST00000440514 N4BP2Q86UW6 1770 aaPredicted RBP23.35■■□□□ 1.33
CPSF4-205ENST00000440514 HLFQ16534 295 aa23.35■■□□□ 1.33
CPSF4-205ENST00000440514 ZBTB3Q9H5J0 574 aa23.35■■□□□ 1.33
CPSF4-205ENST00000440514 DDX21Q9NR30 783 aaKnown RBP eCLIP23.35■■□□□ 1.33
CPSF4-205ENST00000440514 ZNF652Q9Y2D9 606 aa23.35■■□□□ 1.33
CPSF4-205ENST00000440514 CARMIL3Q8ND23 1372 aa23.35■■□□□ 1.33
CPSF4-205ENST00000440514 PXDNLA1KZ92 1463 aa23.35■■□□□ 1.33
CPSF4-205ENST00000440514 MAP3K15Q6ZN16 1313 aa23.34■■□□□ 1.33
CPSF4-205ENST00000440514 SERPINB2P05120 415 aa23.33■■□□□ 1.33
CPSF4-205ENST00000440514 XAGE3Q8WTP9 111 aa23.33■■□□□ 1.33
CPSF4-205ENST00000440514 CLEC4GQ6UXB4 293 aa23.32■■□□□ 1.32
CPSF4-205ENST00000440514 RGL2O15211 777 aa23.31■■□□□ 1.32
CPSF4-205ENST00000440514 AIMP1Q12904 312 aaKnown RBP23.31■■□□□ 1.32
CPSF4-205ENST00000440514 TWISTNBQ3B726 338 aaPredicted RBP23.31■■□□□ 1.32
CPSF4-205ENST00000440514 SETDB2Q96T68 719 aa23.31■■□□□ 1.32
CPSF4-205ENST00000440514 DBF4Q9UBU7 674 aaPredicted RBP23.31■■□□□ 1.32
CPSF4-205ENST00000440514 ANKRD36CQ5JPF3 1778 aa23.31■■□□□ 1.32
CPSF4-205ENST00000440514 ATP10DQ9P241 1426 aa23.31■■□□□ 1.32
CPSF4-205ENST00000440514 ANKRD31Q8N7Z5 1873 aa23.3■■□□□ 1.32
CPSF4-205ENST00000440514 ERVV-1B6SEH8 477 aa23.3■■□□□ 1.32
CPSF4-205ENST00000440514 COPS6Q7L5N1 327 aa23.3■■□□□ 1.32
CPSF4-205ENST00000440514 MYH16Q9H6N6 1097 aa23.3■■□□□ 1.32
CPSF4-205ENST00000440514 WWC3Q9ULE0 1092 aa23.3■■□□□ 1.32
CPSF4-205ENST00000440514 NIP7Q9Y221 180 aaKnown RBP eCLIP23.3■■□□□ 1.32
CPSF4-205ENST00000440514 EXOSC9Q06265 439 aaKnown RBP23.29■■□□□ 1.32
CPSF4-205ENST00000440514 GOLGA2Q08379 1002 aa23.29■■□□□ 1.32
CPSF4-205ENST00000440514 PELP1Q8IZL8 1130 aaKnown RBP23.29■■□□□ 1.32
CPSF4-205ENST00000440514 ARFGEF2Q9Y6D5 1785 aa23.28■■□□□ 1.32
CPSF4-205ENST00000440514 TCERG1O14776 1098 aaKnown RBP23.28■■□□□ 1.32
CPSF4-205ENST00000440514 PRR5LQ6MZQ0 368 aa23.28■■□□□ 1.32
CPSF4-205ENST00000440514 CCDC24Q8N4L8 307 aa23.28■■□□□ 1.32
CPSF4-205ENST00000440514 HYPKQ9NX55 129 aa23.27■■□□□ 1.32
CPSF4-205ENST00000440514 BRCA1P38398 1863 aaKnown RBP23.27■■□□□ 1.32
CPSF4-205ENST00000440514 COL11A2P13942 1736 aaPredicted RBP23.27■■□□□ 1.32
CPSF4-205ENST00000440514 A0A0G2JLW4 131 aa23.26■■□□□ 1.31
CPSF4-205ENST00000440514 FAM177BA6PVY3 158 aa23.26■■□□□ 1.31
CPSF4-205ENST00000440514 GPTP24298 496 aa23.26■■□□□ 1.31
CPSF4-205ENST00000440514 CCDC30Q5VVM6 783 aa23.26■■□□□ 1.31
CPSF4-205ENST00000440514 GIGYF2Q6Y7W6 1299 aaKnown RBP23.26■■□□□ 1.31
CPSF4-205ENST00000440514 CNBD1Q8NA66 436 aa23.26■■□□□ 1.31
CPSF4-205ENST00000440514 DLEC1Q9Y238 1755 aa23.26■■□□□ 1.31
CPSF4-205ENST00000440514 DPEP1P16444 411 aa23.25■■□□□ 1.31
CPSF4-205ENST00000440514 TGFB2P61812 414 aa23.25■■□□□ 1.31
CPSF4-205ENST00000440514 NBPF5PQ86XG9 351 aaPredicted RBP23.25■■□□□ 1.31
CPSF4-205ENST00000440514 PHAXQ9H814 394 aaKnown RBP23.25■■□□□ 1.31
CPSF4-205ENST00000440514 UBN2Q6ZU65 1347 aa23.25■■□□□ 1.31
CPSF4-205ENST00000440514 DCAF8L1A6NGE4 600 aa23.24■■□□□ 1.31
CPSF4-205ENST00000440514 YBX3P16989 372 aaKnown RBP eCLIP23.24■■□□□ 1.315e-8■□□□□ 10.9
CPSF4-205ENST00000440514 CHRNA5P30532 468 aa23.24■■□□□ 1.31
CPSF4-205ENST00000440514 GPR162Q16538 588 aa23.24■■□□□ 1.31
CPSF4-205ENST00000440514 TNRC6CQ9HCJ0 1690 aaKnown RBP23.23■■□□□ 1.31
CPSF4-205ENST00000440514 NPHP1O15259 732 aa23.23■■□□□ 1.31
CPSF4-205ENST00000440514 CDCA7LQ96GN5 454 aa23.23■■□□□ 1.31
CPSF4-205ENST00000440514 E9PSI1 815 aa23.22■■□□□ 1.31
CPSF4-205ENST00000440514 VAMP4O75379 141 aa23.22■■□□□ 1.31
CPSF4-205ENST00000440514 ZNF34Q8IZ26 560 aa23.22■■□□□ 1.31
CPSF4-205ENST00000440514 STK31Q9BXU1 1019 aa23.22■■□□□ 1.31
CPSF4-205ENST00000440514 ST5P78524 1137 aa23.21■■□□□ 1.31
CPSF4-205ENST00000440514 SLFN5Q08AF3 891 aa23.21■■□□□ 1.31
CPSF4-205ENST00000440514 PLBD2Q8NHP8 589 aa23.21■■□□□ 1.31
CPSF4-205ENST00000440514 CHMP4AQ9BY43 222 aa23.21■■□□□ 1.31
CPSF4-205ENST00000440514 ABCC12Q96J65 1359 aa23.21■■□□□ 1.31
CPSF4-205ENST00000440514 IBTKQ9P2D0 1353 aaPredicted RBP23.2■■□□□ 1.3
CPSF4-205ENST00000440514 KCNA3P22001 575 aa23.2■■□□□ 1.3
CPSF4-205ENST00000440514 HNRNPUQ00839 825 aaKnown RBP eCLIP23.19■■□□□ 1.3
CPSF4-205ENST00000440514 SUSD4Q5VX71 490 aa23.19■■□□□ 1.3
CPSF4-205ENST00000440514 ANKRD13DQ6ZTN6 518 aa23.19■■□□□ 1.3
CPSF4-205ENST00000440514 HSP90AB3PQ58FF7 597 aa23.18■■□□□ 1.3
CPSF4-205ENST00000440514 TPTE2Q6XPS3 522 aa23.18■■□□□ 1.3
CPSF4-205ENST00000440514 G2E3Q7L622 706 aa23.18■■□□□ 1.3
CPSF4-205ENST00000440514 NUTM1Q86Y26 1132 aa23.18■■□□□ 1.3
CPSF4-205ENST00000440514 C2CD5Q86YS7 1000 aa23.18■■□□□ 1.3
CPSF4-205ENST00000440514 BRIP1Q9BX63 1249 aa23.18■■□□□ 1.3
CPSF4-205ENST00000440514 NTSR2O95665 410 aa23.17■■□□□ 1.3
CPSF4-205ENST00000440514 TCIRG1Q13488 830 aa23.17■■□□□ 1.3
CPSF4-205ENST00000440514 SLC4A2P04920 1241 aa23.16■■□□□ 1.3
CPSF4-205ENST00000440514 ERFEQ4G0M1 354 aa23.16■■□□□ 1.3
CPSF4-205ENST00000440514 PARP10Q53GL7 1025 aa23.16■■□□□ 1.3
CPSF4-205ENST00000440514 RIC3Q7Z5B4 369 aa23.16■■□□□ 1.3
CPSF4-205ENST00000440514 ZNF428Q96B54 188 aa23.16■■□□□ 1.3
CPSF4-205ENST00000440514 NYXQ9GZU5 481 aa23.16■■□□□ 1.3
CPSF4-205ENST00000440514 BCS1LQ9Y276 419 aa23.16■■□□□ 1.3
CPSF4-205ENST00000440514 ARFGEF1Q9Y6D6 1849 aa23.15■■□□□ 1.3
CPSF4-205ENST00000440514 GTF2E1P29083 439 aaPredicted RBP23.15■■□□□ 1.3
CPSF4-205ENST00000440514 PDE6BP35913 854 aa23.15■■□□□ 1.3
CPSF4-205ENST00000440514 NLRP10Q86W26 655 aa23.15■■□□□ 1.3
CPSF4-205ENST00000440514 PIM2Q9P1W9 311 aa23.15■■□□□ 1.3
CPSF4-205ENST00000440514 CACNA1SQ13698 1873 aa23.15■■□□□ 1.3
CPSF4-205ENST00000440514 ADCY9O60503 1353 aa23.14■■□□□ 1.3
CPSF4-205ENST00000440514 CACNA1FO60840 1977 aa23.14■■□□□ 1.3
CPSF4-205ENST00000440514 ATP5J2-PTCD1G3V325 749 aa23.14■■□□□ 1.29
CPSF4-205ENST00000440514 H0YIN7 160 aa23.14■■□□□ 1.29
CPSF4-205ENST00000440514 DDX58O95786 925 aaKnown RBP23.13■■□□□ 1.29
CPSF4-205ENST00000440514 PPP1R42Q7Z4L9 355 aa23.13■■□□□ 1.29
CPSF4-205ENST00000440514 TRMT2AQ8IZ69 625 aaKnown RBP23.13■■□□□ 1.29
CPSF4-205ENST00000440514 ISCA1Q9BUE6 129 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms