RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 FAM135AQ9P2D6 1515 aa19.93■□□□□ 0.78
PTPRF-209ENST00000438120 RNF41Q9H4P4 317 aaPredicted RBP19.93■□□□□ 0.78
PTPRF-209ENST00000438120 ACEP12821 1306 aa19.93■□□□□ 0.78
PTPRF-209ENST00000438120 PDIA4P13667 645 aaKnown RBP19.93■□□□□ 0.78
PTPRF-209ENST00000438120 TMEM67Q5HYA8 995 aa19.93■□□□□ 0.78
PTPRF-209ENST00000438120 CLIP2Q9UDT6 1046 aa19.93■□□□□ 0.78
PTPRF-209ENST00000438120 ERICH4A6NGS2 130 aa19.93■□□□□ 0.78
PTPRF-209ENST00000438120 USP16Q9Y5T5 823 aa19.93■□□□□ 0.78
PTPRF-209ENST00000438120 DNMBPQ6XZF7 1577 aa19.93■□□□□ 0.78
PTPRF-209ENST00000438120 LRPPRCP42704 1394 aaKnown RBP19.93■□□□□ 0.78
PTPRF-209ENST00000438120 PTPN23Q9H3S7 1636 aa19.92■□□□□ 0.78
PTPRF-209ENST00000438120 IQGAP2Q13576 1575 aa19.92■□□□□ 0.78
PTPRF-209ENST00000438120 PTPN14Q15678 1187 aa19.92■□□□□ 0.78
PTPRF-209ENST00000438120 TNNT1P13805 278 aa19.92■□□□□ 0.78
PTPRF-209ENST00000438120 TMEM266Q2M3C6 531 aa19.92■□□□□ 0.78
PTPRF-209ENST00000438120 TRMT1Q9NXH9 659 aaKnown RBP19.92■□□□□ 0.78
PTPRF-209ENST00000438120 USP25Q9UHP3 1055 aa19.92■□□□□ 0.78
PTPRF-209ENST00000438120 POTEJP0CG39 1038 aa19.92■□□□□ 0.78
PTPRF-209ENST00000438120 NUP88Q99567 741 aaPredicted RBP19.92■□□□□ 0.78
PTPRF-209ENST00000438120 IGHDP01880 384 aa19.92■□□□□ 0.78
PTPRF-209ENST00000438120 GBP2P32456 591 aaPredicted RBP19.91■□□□□ 0.78
PTPRF-209ENST00000438120 DISP3Q9P2K9 1392 aa19.91■□□□□ 0.78
PTPRF-209ENST00000438120 CCDC113Q9H0I3 377 aa19.91■□□□□ 0.78
PTPRF-209ENST00000438120 URI1O94763 535 aaPredicted RBP19.91■□□□□ 0.78
PTPRF-209ENST00000438120 PPP4R3AQ6IN85 833 aa19.91■□□□□ 0.78
PTPRF-209ENST00000438120 PAXIP1Q6ZW49 1069 aaPredicted RBP19.91■□□□□ 0.78
PTPRF-209ENST00000438120 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.91■□□□□ 0.78
PTPRF-209ENST00000438120 TSPY2A6NKD2 308 aa19.91■□□□□ 0.78
PTPRF-209ENST00000438120 SPTY2D1Q68D10 685 aaPredicted RBP19.9■□□□□ 0.78
PTPRF-209ENST00000438120 ZNF622Q969S3 477 aaKnown RBP eCLIP19.9■□□□□ 0.78
PTPRF-209ENST00000438120 TDRD12Q587J7 1177 aaKnown RBP19.9■□□□□ 0.78
PTPRF-209ENST00000438120 CCDC178Q5BJE1 867 aa19.9■□□□□ 0.78
PTPRF-209ENST00000438120 DDX46Q7L014 1031 aaKnown RBP19.9■□□□□ 0.78
PTPRF-209ENST00000438120 IQSEC3Q9UPP2 1182 aaPredicted RBP19.9■□□□□ 0.78
PTPRF-209ENST00000438120 KIF4BQ2VIQ3 1234 aa19.9■□□□□ 0.78
PTPRF-209ENST00000438120 ZSCAN30Q86W11 494 aa19.89■□□□□ 0.78
PTPRF-209ENST00000438120 RAB34Q9BZG1 259 aa19.89■□□□□ 0.78
PTPRF-209ENST00000438120 PHAXQ9H814 394 aaKnown RBP19.89■□□□□ 0.78
PTPRF-209ENST00000438120 MACROD2A1Z1Q3 448 aa19.89■□□□□ 0.77
PTPRF-209ENST00000438120 IDEP14735 1019 aa19.89■□□□□ 0.77
PTPRF-209ENST00000438120 CASQ1P31415 396 aa19.89■□□□□ 0.77
PTPRF-209ENST00000438120 IARSP41252 1262 aaKnown RBP19.89■□□□□ 0.77
PTPRF-209ENST00000438120 PRKCSHP14314 528 aaPredicted RBP19.89■□□□□ 0.77
PTPRF-209ENST00000438120 FEZ1Q99689 392 aa19.89■□□□□ 0.77
PTPRF-209ENST00000438120 SLC26A6Q9BXS9 759 aa19.89■□□□□ 0.77
PTPRF-209ENST00000438120 KIF5CO60282 957 aa19.88■□□□□ 0.77
PTPRF-209ENST00000438120 ACSBG1Q96GR2 724 aa19.88■□□□□ 0.77
PTPRF-209ENST00000438120 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.88■□□□□ 0.776e-7■■■■■ 65.8
PTPRF-209ENST00000438120 CDC5LQ99459 802 aaKnown RBP19.88■□□□□ 0.77
PTPRF-209ENST00000438120 TTC21BQ7Z4L5 1316 aa19.88■□□□□ 0.77
PTPRF-209ENST00000438120 CTNNBL1Q8WYA6 563 aaPredicted RBP19.88■□□□□ 0.77
PTPRF-209ENST00000438120 LRRC2Q9BYS8 371 aa19.88■□□□□ 0.77
PTPRF-209ENST00000438120 CHPF2Q9P2E5 772 aa19.88■□□□□ 0.77
PTPRF-209ENST00000438120 RBM27Q9P2N5 1060 aaKnown RBP19.88■□□□□ 0.77
PTPRF-209ENST00000438120 KIF14Q15058 1648 aa19.88■□□□□ 0.77
PTPRF-209ENST00000438120 ZSCAN12O43309 604 aa19.88■□□□□ 0.77
PTPRF-209ENST00000438120 SLC39A6Q13433 755 aa19.88■□□□□ 0.77
PTPRF-209ENST00000438120 MFSD6Q6ZSS7 791 aa19.88■□□□□ 0.77
PTPRF-209ENST00000438120 SLF2Q8IX21 1173 aa19.87■□□□□ 0.77
PTPRF-209ENST00000438120 NEK1Q96PY6 1258 aa19.87■□□□□ 0.77
PTPRF-209ENST00000438120 STX6O43752 255 aa19.87■□□□□ 0.77
PTPRF-209ENST00000438120 ORC3Q9UBD5 711 aaPredicted RBP19.87■□□□□ 0.77
PTPRF-209ENST00000438120 KAT14Q9H8E8 782 aa19.87■□□□□ 0.77
PTPRF-209ENST00000438120 METAP2P50579 478 aaKnown RBP eCLIP19.87■□□□□ 0.77
PTPRF-209ENST00000438120 PDCL2Q8N4E4 241 aa19.87■□□□□ 0.77
PTPRF-209ENST00000438120 TCERG1LQ5VWI1 586 aa19.87■□□□□ 0.77
PTPRF-209ENST00000438120 TCEANC2Q96MN5 208 aa19.87■□□□□ 0.77
PTPRF-209ENST00000438120 RFC4P35249 363 aa19.86■□□□□ 0.77
PTPRF-209ENST00000438120 TTF1Q15361 905 aaPredicted RBP19.86■□□□□ 0.77
PTPRF-209ENST00000438120 CALRP27797 417 aaKnown RBP19.86■□□□□ 0.77
PTPRF-209ENST00000438120 GOPCQ9HD26 462 aa19.86■□□□□ 0.77
PTPRF-209ENST00000438120 MTIF2P46199 727 aaKnown RBP19.86■□□□□ 0.77
PTPRF-209ENST00000438120 NECAB1Q8N987 351 aa19.86■□□□□ 0.77
PTPRF-209ENST00000438120 CRACR2AQ9BSW2 395 aa19.86■□□□□ 0.77
PTPRF-209ENST00000438120 GOLGA6L7A0A1B0GV03 622 aa19.86■□□□□ 0.77
PTPRF-209ENST00000438120 SNRPA1P09661 255 aaKnown RBP19.86■□□□□ 0.77
PTPRF-209ENST00000438120 PIK3R4Q99570 1358 aa19.86■□□□□ 0.77
PTPRF-209ENST00000438120 USP8P40818 1118 aa19.86■□□□□ 0.77
PTPRF-209ENST00000438120 ANKRD13DQ6ZTN6 518 aa19.86■□□□□ 0.77
PTPRF-209ENST00000438120 TTC22Q5TAA0 569 aa19.85■□□□□ 0.77
PTPRF-209ENST00000438120 C14orf93Q9H972 538 aaKnown RBP19.85■□□□□ 0.77
PTPRF-209ENST00000438120 TMCO3Q6UWJ1 677 aa19.85■□□□□ 0.77
PTPRF-209ENST00000438120 SCAF11Q99590 1463 aaKnown RBP19.85■□□□□ 0.77
PTPRF-209ENST00000438120 EZRP15311 586 aaKnown RBP19.85■□□□□ 0.77
PTPRF-209ENST00000438120 TMC6Q7Z403 805 aa19.85■□□□□ 0.77
PTPRF-209ENST00000438120 CETN2P41208 172 aa19.85■□□□□ 0.77
PTPRF-209ENST00000438120 MEIS3Q99687 375 aa19.85■□□□□ 0.77
PTPRF-209ENST00000438120 TRIM21P19474 475 aaKnown RBP19.85■□□□□ 0.77
PTPRF-209ENST00000438120 CCDC97Q96F63 343 aaPredicted RBP19.85■□□□□ 0.77
PTPRF-209ENST00000438120 LUZP1Q86V48 1076 aa19.84■□□□□ 0.77
PTPRF-209ENST00000438120 PLEKHH1Q9ULM0 1364 aa19.84■□□□□ 0.77
PTPRF-209ENST00000438120 PDE4BQ07343 736 aa19.84■□□□□ 0.77
PTPRF-209ENST00000438120 SAMM50Q9Y512 469 aa19.84■□□□□ 0.77
PTPRF-209ENST00000438120 F8W031 263 aaPredicted RBP19.84■□□□□ 0.77
PTPRF-209ENST00000438120 VPS36Q86VN1 386 aa19.84■□□□□ 0.77
PTPRF-209ENST00000438120 NCOA7Q8NI08 942 aa19.84■□□□□ 0.77
PTPRF-209ENST00000438120 DNAJC5BQ9UF47 199 aa19.84■□□□□ 0.77
PTPRF-209ENST00000438120 C16orf45Q96MC5 204 aaPredicted RBP19.84■□□□□ 0.77
PTPRF-209ENST00000438120 BAG4O95429 457 aaKnown RBP19.84■□□□□ 0.77
PTPRF-209ENST00000438120 NBPF6Q5VWK0 638 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms