RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MEX3CQ5U5Q3 659 aaKnown RBP8.26□□□□□ -1.09
VPS53-204ENST00000437048 DNAJC8O75937 253 aaPredicted RBP8.26□□□□□ -1.09
VPS53-204ENST00000437048 CSB-PGBD3P0DP91 1061 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 TSNARE1Q96NA8 513 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 CFAP157Q5JU67 520 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 WDR78Q5VTH9 848 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 CEP135Q66GS9 1140 aa8.26□□□□□ -1.09
VPS53-204ENST00000437048 ANKRD24Q8TF21 1146 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 PRDM2Q13029 1718 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 CTAGE15A4D2H0 777 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 CTAGE8P0CG41 777 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 TRPC3Q13507 836 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 CCDC178Q5BJE1 867 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 CTAGE6Q86UF2 777 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 CTAGE4Q8IX94 777 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 PPFIA2O75334 1257 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 ERO1AQ96HE7 468 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 ZNF692Q9BU19 519 aaPredicted RBP8.25□□□□□ -1.09
VPS53-204ENST00000437048 NPHP3Q7Z494 1330 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 ITSN2Q9NZM3 1697 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 VIMP08670 466 aaKnown RBP8.25□□□□□ -1.09
VPS53-204ENST00000437048 RNF41Q9H4P4 317 aaPredicted RBP8.25□□□□□ -1.09
VPS53-204ENST00000437048 CTNNBL1Q8WYA6 563 aaPredicted RBP8.25□□□□□ -1.09
VPS53-204ENST00000437048 NLRP5P59047 1200 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 AMOTQ4VCS5 1084 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 PLCD3Q8N3E9 789 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 RBBP5Q15291 538 aaKnown RBP8.25□□□□□ -1.09
VPS53-204ENST00000437048 IMPACTQ9P2X3 320 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 LIMCH1Q9UPQ0 1083 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 ANAPC4Q9UJX5 808 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 ATP11AP98196 1134 aa8.25□□□□□ -1.09
VPS53-204ENST00000437048 ANKRD62A6NC57 917 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 TRERF1Q96PN7 1200 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 TSKSQ9UJT2 592 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 ATP2A2P16615 1042 aaKnown RBP8.24□□□□□ -1.09
VPS53-204ENST00000437048 CCDC14Q49A88 953 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 APBA1Q02410 837 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 UTP14CQ5TAP6 766 aaKnown RBP8.24□□□□□ -1.09
VPS53-204ENST00000437048 PTPRCP08575 1304 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 ARHGAP45Q92619 1136 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 VCX3AQ9NNX9 186 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 TMEM266Q2M3C6 531 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 LMOD2Q6P5Q4 547 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 ZNF365Q70YC5 407 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 SAMD15Q9P1V8 674 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 TNIP1Q15025 636 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 SOGA3Q5TF21 947 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 ZNF622Q969S3 477 aaKnown RBP eCLIP8.24□□□□□ -1.098e-8■■■■□ 21.7
VPS53-204ENST00000437048 GSTTP1A0A1W2PQM5 241 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 EVI5O60447 810 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 RUFY4Q6ZNE9 571 aa8.24□□□□□ -1.09
VPS53-204ENST00000437048 ERCC3P19447 782 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 ATP6V1AP38606 617 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 LMAN1P49257 510 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 WHAMMP3Q1A5X7 153 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 KIAA0753Q2KHM9 967 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 PDRG1Q9NUG6 133 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 IQSEC3Q9UPP2 1182 aaPredicted RBP8.23□□□□□ -1.09
VPS53-204ENST00000437048 IBTKQ9P2D0 1353 aaPredicted RBP8.23□□□□□ -1.09
VPS53-204ENST00000437048 CNGA4Q8IV77 575 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 FAN1Q9Y2M0 1017 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 IQCGQ9H095 443 aaKnown RBP8.23□□□□□ -1.09
VPS53-204ENST00000437048 MED4Q9NPJ6 270 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 ACTN2P35609 894 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 CCDC129Q6ZRS4 1044 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 EHMT1Q9H9B1 1298 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 STRN4Q9NRL3 753 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 FEZ2Q9UHY8 353 aaPredicted RBP8.23□□□□□ -1.09
VPS53-204ENST00000437048 KIF21AQ7Z4S6 1674 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 FCHSD2O94868 740 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 BICDL1Q6ZP65 573 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 PPFIA4O75335 1185 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 MPHOSPH8Q99549 860 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 MTRF1LQ9UGC7 380 aaKnown RBP8.23□□□□□ -1.09
VPS53-204ENST00000437048 ERICH4A6NGS2 130 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 CAPN2P17655 700 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 ZNF165P49910 485 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 FAM76AQ8TAV0 307 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 KIF1BPQ96EK5 621 aa8.23□□□□□ -1.09
VPS53-204ENST00000437048 CCDC69A6NI79 296 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 DDX23Q9BUQ8 820 aaKnown RBP8.22□□□□□ -1.09
VPS53-204ENST00000437048 CSRNP2Q9H175 543 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 PDZRN3Q9UPQ7 1066 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 SYCE3A1L190 88 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 URI1O94763 535 aaPredicted RBP8.22□□□□□ -1.09
VPS53-204ENST00000437048 HOMEZQ8IX15 550 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 TMTC2Q8N394 836 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 CADPSQ9ULU8 1353 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 A0A087WZG4 1122 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 NCOA2Q15596 1464 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 DTNBO60941 627 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 NOLC1Q14978 699 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS53-204ENST00000437048 RNF187Q5TA31 235 aaPredicted RBP8.22□□□□□ -1.09
VPS53-204ENST00000437048 CCDC114Q96M63 670 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 KIF1CO43896 1103 aaKnown RBP8.22□□□□□ -1.09
VPS53-204ENST00000437048 GFM2Q969S9 779 aaKnown RBP8.22□□□□□ -1.09
VPS53-204ENST00000437048 Q9H521 79 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 MTMR3Q13615 1198 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 EFCC1Q9HA90 598 aa8.22□□□□□ -1.09
VPS53-204ENST00000437048 NBPF8Q3BBV2 869 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 1622.5 ms