RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 HDGFL1Q5TGJ6 251 aa14.36□□□□□ -0.11
LINC00539-203ENST00000434601 FTSJ3Q8IY81 847 aaKnown RBP14.36□□□□□ -0.11
LINC00539-203ENST00000434601 PANK1Q8TE04 598 aa14.36□□□□□ -0.11
LINC00539-203ENST00000434601 STK31Q9BXU1 1019 aa14.36□□□□□ -0.11
LINC00539-203ENST00000434601 CHMP4AQ9BY43 222 aa14.36□□□□□ -0.11
LINC00539-203ENST00000434601 TNNQ9UQP3 1299 aa14.36□□□□□ -0.11
LINC00539-203ENST00000434601 N4BP2Q86UW6 1770 aaPredicted RBP14.35□□□□□ -0.11
LINC00539-203ENST00000434601 RPS6KA4O75676 772 aa14.35□□□□□ -0.11
LINC00539-203ENST00000434601 RFC4P35249 363 aa14.35□□□□□ -0.11
LINC00539-203ENST00000434601 DZIP1LQ8IYY4 767 aaKnown RBP14.35□□□□□ -0.11
LINC00539-203ENST00000434601 ARHGAP45Q92619 1136 aa14.35□□□□□ -0.11
LINC00539-203ENST00000434601 ARHGEF1Q92888 912 aaKnown RBP14.35□□□□□ -0.11
LINC00539-203ENST00000434601 RLBP1P12271 317 aa14.34□□□□□ -0.11
LINC00539-203ENST00000434601 CLUAP1Q96AJ1 413 aa14.34□□□□□ -0.11
LINC00539-203ENST00000434601 FMNL2Q96PY5 1086 aa14.34□□□□□ -0.11
LINC00539-203ENST00000434601 SLC4A9Q96Q91 983 aa14.34□□□□□ -0.11
LINC00539-203ENST00000434601 CCDC87Q9NVE4 849 aa14.34□□□□□ -0.11
LINC00539-203ENST00000434601 PARP3Q9Y6F1 533 aa14.34□□□□□ -0.11
LINC00539-203ENST00000434601 PTPRCP08575 1304 aa14.34□□□□□ -0.11
LINC00539-203ENST00000434601 CICQ96RK0 1608 aaPredicted RBP14.33□□□□□ -0.11
LINC00539-203ENST00000434601 C4AP0C0L4 1744 aa14.33□□□□□ -0.12
LINC00539-203ENST00000434601 ZNF526Q8TF50 670 aaPredicted RBP14.33□□□□□ -0.12
LINC00539-203ENST00000434601 ZNF496Q96IT1 587 aaPredicted RBP14.33□□□□□ -0.12
LINC00539-203ENST00000434601 API5Q9BZZ5 524 aaKnown RBP14.33□□□□□ -0.12
LINC00539-203ENST00000434601 WWC3Q9ULE0 1092 aa14.33□□□□□ -0.12
LINC00539-203ENST00000434601 COG6Q9Y2V7 657 aa14.33□□□□□ -0.12
LINC00539-203ENST00000434601 ABCC4O15439 1325 aa14.33□□□□□ -0.12
LINC00539-203ENST00000434601 KIAA1551Q9HCM1 1747 aa14.32□□□□□ -0.12
LINC00539-203ENST00000434601 PXDNLA1KZ92 1463 aa14.32□□□□□ -0.12
LINC00539-203ENST00000434601 BRCA1P38398 1863 aaKnown RBP14.32□□□□□ -0.12
LINC00539-203ENST00000434601 SLC4A2P04920 1241 aa14.32□□□□□ -0.12
LINC00539-203ENST00000434601 GYS1P13807 737 aa14.32□□□□□ -0.12
LINC00539-203ENST00000434601 NECTIN2Q92692 538 aa14.32□□□□□ -0.12
LINC00539-203ENST00000434601 C10orf71Q711Q0 1435 aa14.32□□□□□ -0.12
LINC00539-203ENST00000434601 EIF2S2P20042 333 aaKnown RBP14.31□□□□□ -0.12
LINC00539-203ENST00000434601 MVPQ14764 893 aaKnown RBP14.31□□□□□ -0.12
LINC00539-203ENST00000434601 BCS1LQ9Y276 419 aa14.31□□□□□ -0.12
LINC00539-203ENST00000434601 ARFGEF1Q9Y6D6 1849 aa14.31□□□□□ -0.12
LINC00539-203ENST00000434601 A0A0G2JLW4 131 aa14.3□□□□□ -0.12
LINC00539-203ENST00000434601 PRAMEF22A3QJZ6 481 aa14.3□□□□□ -0.12
LINC00539-203ENST00000434601 PTCD1O75127 700 aaKnown RBP14.3□□□□□ -0.12
LINC00539-203ENST00000434601 SNRPA1P09661 255 aaKnown RBP14.3□□□□□ -0.12
LINC00539-203ENST00000434601 HSPA6P17066 643 aa14.3□□□□□ -0.12
LINC00539-203ENST00000434601 TMEM57Q8N5G2 664 aa14.3□□□□□ -0.12
LINC00539-203ENST00000434601 CHPF2Q9P2E5 772 aa14.3□□□□□ -0.12
LINC00539-203ENST00000434601 CRKLP46109 303 aaKnown RBP14.29□□□□□ -0.12
LINC00539-203ENST00000434601 FLIIQ13045 1269 aa14.29□□□□□ -0.12
LINC00539-203ENST00000434601 B4GALNT3Q6L9W6 998 aa14.29□□□□□ -0.12
LINC00539-203ENST00000434601 G2E3Q7L622 706 aa14.29□□□□□ -0.12
LINC00539-203ENST00000434601 ITPRIPQ8IWB1 547 aa14.29□□□□□ -0.12
LINC00539-203ENST00000434601 CCDC136Q96JN2 1154 aa14.29□□□□□ -0.12
LINC00539-203ENST00000434601 DBF4Q9UBU7 674 aaPredicted RBP14.29□□□□□ -0.12
LINC00539-203ENST00000434601 TJP1Q07157 1748 aa14.28□□□□□ -0.12
LINC00539-203ENST00000434601 AAMPQ13685 434 aa14.28□□□□□ -0.12
LINC00539-203ENST00000434601 ARHGAP27Q6ZUM4 889 aa14.28□□□□□ -0.12
LINC00539-203ENST00000434601 DDX19BQ9UMR2 479 aa14.28□□□□□ -0.12
LINC00539-203ENST00000434601 DPEP1P16444 411 aa14.27□□□□□ -0.13
LINC00539-203ENST00000434601 PIM2Q9P1W9 311 aa14.27□□□□□ -0.13
LINC00539-203ENST00000434601 ERBB4Q15303 1308 aa14.26□□□□□ -0.13
LINC00539-203ENST00000434601 USP42Q9H9J4 1324 aaKnown RBP14.26□□□□□ -0.13
LINC00539-203ENST00000434601 KIF3CO14782 793 aa14.26□□□□□ -0.13
LINC00539-203ENST00000434601 FKBP5Q13451 457 aaPredicted RBP14.26□□□□□ -0.13
LINC00539-203ENST00000434601 DDX21Q9NR30 783 aaKnown RBP eCLIP14.26□□□□□ -0.13
LINC00539-203ENST00000434601 ZPR1O75312 459 aa14.25□□□□□ -0.13
LINC00539-203ENST00000434601 ANXA1P04083 346 aa14.25□□□□□ -0.13
LINC00539-203ENST00000434601 PROSER3Q2NL68 480 aa14.25□□□□□ -0.13
LINC00539-203ENST00000434601 INTS3Q68E01 1043 aaKnown RBP14.25□□□□□ -0.13
LINC00539-203ENST00000434601 VSIG10Q8N0Z9 540 aa14.25□□□□□ -0.13
LINC00539-203ENST00000434601 HYPKQ9NX55 129 aa14.25□□□□□ -0.13
LINC00539-203ENST00000434601 TOMM70O94826 608 aa14.24□□□□□ -0.13
LINC00539-203ENST00000434601 DALRD3Q5D0E6 543 aaKnown RBP14.24□□□□□ -0.13
LINC00539-203ENST00000434601 CHMP4BQ9H444 224 aaKnown RBP14.24□□□□□ -0.13
LINC00539-203ENST00000434601 PHAXQ9H814 394 aaKnown RBP14.24□□□□□ -0.13
LINC00539-203ENST00000434601 USP16Q9Y5T5 823 aa14.24□□□□□ -0.13
LINC00539-203ENST00000434601 F6X3S4 739 aa14.23□□□□□ -0.13
LINC00539-203ENST00000434601 KCNA3P22001 575 aa14.23□□□□□ -0.13
LINC00539-203ENST00000434601 PDIA6Q15084 440 aa14.23□□□□□ -0.13
LINC00539-203ENST00000434601 INTS5Q6P9B9 1019 aaKnown RBP14.23□□□□□ -0.13
LINC00539-203ENST00000434601 SRP68Q9UHB9 627 aaKnown RBP14.23□□□□□ -0.13
LINC00539-203ENST00000434601 SBF1O95248 1867 aa14.23□□□□□ -0.13
LINC00539-203ENST00000434601 TM4SF1P30408 202 aa14.22□□□□□ -0.13
LINC00539-203ENST00000434601 CCT4P50991 539 aaKnown RBP14.22□□□□□ -0.13
LINC00539-203ENST00000434601 APLP1P51693 650 aa14.22□□□□□ -0.13
LINC00539-203ENST00000434601 IFFO2Q5TF58 517 aa14.22□□□□□ -0.13
LINC00539-203ENST00000434601 DNAJC10Q8IXB1 793 aa14.22□□□□□ -0.13
LINC00539-203ENST00000434601 TEX13AQ9BXU3 409 aaPredicted RBP14.22□□□□□ -0.13
LINC00539-203ENST00000434601 ARFGEF2Q9Y6D5 1785 aa14.22□□□□□ -0.13
LINC00539-203ENST00000434601 AFDNP55196 1824 aaKnown RBP14.21□□□□□ -0.13
LINC00539-203ENST00000434601 POLRMTO00411 1230 aaKnown RBP14.21□□□□□ -0.13
LINC00539-203ENST00000434601 DDX58O95786 925 aaKnown RBP14.21□□□□□ -0.13
LINC00539-203ENST00000434601 DDR1Q08345 913 aa14.21□□□□□ -0.13
LINC00539-203ENST00000434601 C9orf131Q5VYM1 1079 aa14.21□□□□□ -0.13
LINC00539-203ENST00000434601 SLC4A10Q6U841 1118 aa14.21□□□□□ -0.13
LINC00539-203ENST00000434601 LRP10Q7Z4F1 713 aa14.21□□□□□ -0.13
LINC00539-203ENST00000434601 ZBTB40Q9NUA8 1239 aa14.21□□□□□ -0.13
LINC00539-203ENST00000434601 NARFQ9UHQ1 456 aa14.21□□□□□ -0.13
LINC00539-203ENST00000434601 KDM2BQ8NHM5 1336 aa14.2□□□□□ -0.14
LINC00539-203ENST00000434601 ZBTB7BO15156 539 aaPredicted RBP14.2□□□□□ -0.14
LINC00539-203ENST00000434601 CYP19A1P11511 503 aaPredicted RBP14.2□□□□□ -0.14
LINC00539-203ENST00000434601 MYL6BP14649 208 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms