RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 SNRKQ9NRH2 765 aa16.48■□□□□ 0.23
COL6A3-207ENST00000433762 LIMCH1Q9UPQ0 1083 aa16.48■□□□□ 0.23
COL6A3-207ENST00000433762 RPAP1Q9BWH6 1393 aaPredicted RBP16.48■□□□□ 0.23
COL6A3-207ENST00000433762 C14orf37Q86TY3 774 aa16.48■□□□□ 0.23
COL6A3-207ENST00000433762 ZSCAN31Q96LW9 406 aaPredicted RBP16.48■□□□□ 0.23
COL6A3-207ENST00000433762 ECHDC1Q9NTX5 307 aa16.48■□□□□ 0.23
COL6A3-207ENST00000433762 ATP6V1DQ9Y5K8 247 aa16.48■□□□□ 0.23
COL6A3-207ENST00000433762 TPM2P07951 284 aa16.47■□□□□ 0.23
COL6A3-207ENST00000433762 FAM184AQ8NB25 1140 aa16.47■□□□□ 0.23
COL6A3-207ENST00000433762 NOL7Q9UMY1 257 aaKnown RBP16.47■□□□□ 0.23
COL6A3-207ENST00000433762 DDX58O95786 925 aaKnown RBP16.46■□□□□ 0.23
COL6A3-207ENST00000433762 MSNP26038 577 aaKnown RBP16.46■□□□□ 0.23
COL6A3-207ENST00000433762 LINS1Q8NG48 757 aa16.46■□□□□ 0.23
COL6A3-207ENST00000433762 EVI5LQ96CN4 794 aa16.46■□□□□ 0.23
COL6A3-207ENST00000433762 NAP1L5Q96NT1 182 aaPredicted RBP16.46■□□□□ 0.23
COL6A3-207ENST00000433762 IL25Q9H293 177 aa16.46■□□□□ 0.23
COL6A3-207ENST00000433762 SH2B1Q9NRF2 756 aaPredicted RBP16.46■□□□□ 0.23
COL6A3-207ENST00000433762 TCHHQ07283 1943 aa16.46■□□□□ 0.23
COL6A3-207ENST00000433762 ALS2Q96Q42 1657 aa16.46■□□□□ 0.23
COL6A3-207ENST00000433762 LETM1O95202 739 aaPredicted RBP16.46■□□□□ 0.23
COL6A3-207ENST00000433762 ZNF500O60304 480 aaPredicted RBP16.45■□□□□ 0.22
COL6A3-207ENST00000433762 UVSSAQ2YD98 709 aa16.45■□□□□ 0.22
COL6A3-207ENST00000433762 VPS53Q5VIR6 699 aa16.45■□□□□ 0.22
COL6A3-207ENST00000433762 UPF3BQ9BZI7 483 aaKnown RBP16.45■□□□□ 0.22
COL6A3-207ENST00000433762 DIAPH3Q9NSV4 1193 aa16.45■□□□□ 0.22
COL6A3-207ENST00000433762 GCP02774 474 aa16.45■□□□□ 0.22
COL6A3-207ENST00000433762 CSPP1Q1MSJ5 1256 aa16.44■□□□□ 0.22
COL6A3-207ENST00000433762 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.44■□□□□ 0.22
COL6A3-207ENST00000433762 DDX21Q9NR30 783 aaKnown RBP eCLIP16.44■□□□□ 0.22
COL6A3-207ENST00000433762 C9orf78Q9NZ63 289 aaPredicted RBP16.44■□□□□ 0.22
COL6A3-207ENST00000433762 RBM27Q9P2N5 1060 aaKnown RBP16.44■□□□□ 0.22
COL6A3-207ENST00000433762 MAP3K2Q9Y2U5 619 aa16.44■□□□□ 0.22
COL6A3-207ENST00000433762 COL15A1P39059 1388 aa16.44■□□□□ 0.22
COL6A3-207ENST00000433762 OFD1O75665 1012 aa16.44■□□□□ 0.22
COL6A3-207ENST00000433762 OS9Q13438 667 aaPredicted RBP16.44■□□□□ 0.22
COL6A3-207ENST00000433762 ESCO1Q5FWF5 840 aa16.44■□□□□ 0.22
COL6A3-207ENST00000433762 TSPY26PQ9H489 355 aa16.44■□□□□ 0.22
COL6A3-207ENST00000433762 STRCQ7RTU9 1775 aa16.44■□□□□ 0.22
COL6A3-207ENST00000433762 SYCE3A1L190 88 aa16.43■□□□□ 0.22
COL6A3-207ENST00000433762 KCNQ3O43525 872 aa16.43■□□□□ 0.22
COL6A3-207ENST00000433762 ZSCAN22P10073 491 aaPredicted RBP16.43■□□□□ 0.22
COL6A3-207ENST00000433762 CCDC39Q9UFE4 941 aa16.43■□□□□ 0.22
COL6A3-207ENST00000433762 AK2P54819 239 aa16.43■□□□□ 0.22
COL6A3-207ENST00000433762 ZSWIM6Q9HCJ5 1215 aa16.43■□□□□ 0.22
COL6A3-207ENST00000433762 C5P01031 1676 aa16.42■□□□□ 0.22
COL6A3-207ENST00000433762 GRM8O00222 908 aa16.42■□□□□ 0.22
COL6A3-207ENST00000433762 ANKRD24Q8TF21 1146 aa16.42■□□□□ 0.22
COL6A3-207ENST00000433762 ALDH8A1Q9H2A2 487 aaPredicted RBP16.42■□□□□ 0.22
COL6A3-207ENST00000433762 RGPD5Q99666 1765 aa16.42■□□□□ 0.22
COL6A3-207ENST00000433762 RFX7Q2KHR2 1363 aa16.42■□□□□ 0.22
COL6A3-207ENST00000433762 IFIT2P09913 472 aaKnown RBP16.42■□□□□ 0.22
COL6A3-207ENST00000433762 MPRIPQ6WCQ1 1025 aa16.42■□□□□ 0.22
COL6A3-207ENST00000433762 NSFL1CQ9UNZ2 370 aaKnown RBP16.42■□□□□ 0.22
COL6A3-207ENST00000433762 JCADQ9P266 1359 aa16.41■□□□□ 0.22
COL6A3-207ENST00000433762 STX6O43752 255 aa16.41■□□□□ 0.22
COL6A3-207ENST00000433762 RUFY3Q7L099 469 aa16.41■□□□□ 0.22
COL6A3-207ENST00000433762 RBM33Q96EV2 1170 aaKnown RBP16.41■□□□□ 0.22
COL6A3-207ENST00000433762 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.41■□□□□ 0.22
COL6A3-207ENST00000433762 UBE2HP62256 183 aa16.41■□□□□ 0.22
COL6A3-207ENST00000433762 CCDC183Q5T5S1 534 aa16.41■□□□□ 0.22
COL6A3-207ENST00000433762 CWC27Q6UX04 472 aaKnown RBP16.41■□□□□ 0.22
COL6A3-207ENST00000433762 RASEFQ8IZ41 740 aa16.41■□□□□ 0.22
COL6A3-207ENST00000433762 LRRC59Q96AG4 307 aaKnown RBP16.41■□□□□ 0.22
COL6A3-207ENST00000433762 ZKSCAN5Q9Y2L8 839 aa16.41■□□□□ 0.22
COL6A3-207ENST00000433762 CCDC171Q6TFL3 1326 aa16.4■□□□□ 0.22
COL6A3-207ENST00000433762 USP48Q86UV5 1035 aa16.4■□□□□ 0.22
COL6A3-207ENST00000433762 SMC3Q9UQE7 1217 aa16.4■□□□□ 0.22
COL6A3-207ENST00000433762 PARP4Q9UKK3 1724 aaKnown RBP16.4■□□□□ 0.22
COL6A3-207ENST00000433762 ZKSCAN1P17029 563 aaPredicted RBP16.4■□□□□ 0.22
COL6A3-207ENST00000433762 NECTIN1Q15223 517 aa16.4■□□□□ 0.22
COL6A3-207ENST00000433762 LARP1Q6PKG0 1096 aaKnown RBP16.4■□□□□ 0.22
COL6A3-207ENST00000433762 CYP46A1Q9Y6A2 500 aa16.4■□□□□ 0.22
COL6A3-207ENST00000433762 LAMB4A4D0S4 1761 aa16.39■□□□□ 0.21
COL6A3-207ENST00000433762 PKD1L3Q7Z443 1732 aa16.39■□□□□ 0.21
COL6A3-207ENST00000433762 F13A1P00488 732 aa16.39■□□□□ 0.21
COL6A3-207ENST00000433762 PSMA5P28066 241 aa16.39■□□□□ 0.21
COL6A3-207ENST00000433762 TICAM2Q86XR7 235 aa16.39■□□□□ 0.21
COL6A3-207ENST00000433762 SYT1P21579 422 aa16.38■□□□□ 0.21
COL6A3-207ENST00000433762 G3BP1Q13283 466 aaKnown RBP eCLIP16.38■□□□□ 0.21
COL6A3-207ENST00000433762 PROSER2Q86WR7 435 aaPredicted RBP16.38■□□□□ 0.21
COL6A3-207ENST00000433762 COL18A1P39060 1754 aa16.38■□□□□ 0.21
COL6A3-207ENST00000433762 MAP4K4O95819 1239 aaPredicted RBP16.38■□□□□ 0.21
COL6A3-207ENST00000433762 CASTP20810 708 aaKnown RBP16.38■□□□□ 0.21
COL6A3-207ENST00000433762 NOL8Q76FK4 1167 aaKnown RBP16.38■□□□□ 0.21
COL6A3-207ENST00000433762 MAP4K1Q92918 833 aa16.38■□□□□ 0.21
COL6A3-207ENST00000433762 PDRG1Q9NUG6 133 aa16.38■□□□□ 0.21
COL6A3-207ENST00000433762 RRP9O43818 475 aaKnown RBP16.37■□□□□ 0.21
COL6A3-207ENST00000433762 ANKRD1Q15327 319 aa16.37■□□□□ 0.21
COL6A3-207ENST00000433762 TSGA10IPQ3SY00 556 aa16.37■□□□□ 0.21
COL6A3-207ENST00000433762 HMG20BQ9P0W2 317 aa16.37■□□□□ 0.21
COL6A3-207ENST00000433762 ERBB3P21860 1342 aa16.37■□□□□ 0.21
COL6A3-207ENST00000433762 PDIA6Q15084 440 aa16.37■□□□□ 0.21
COL6A3-207ENST00000433762 AACSQ86V21 672 aa16.37■□□□□ 0.21
COL6A3-207ENST00000433762 NEXNQ0ZGT2 675 aa16.36■□□□□ 0.21
COL6A3-207ENST00000433762 PROSER3Q2NL68 480 aa16.36■□□□□ 0.21
COL6A3-207ENST00000433762 RNF20Q5VTR2 975 aa16.36■□□□□ 0.21
COL6A3-207ENST00000433762 FOXD4L5Q5VV16 416 aaPredicted RBP16.36■□□□□ 0.21
COL6A3-207ENST00000433762 FOXD4L4Q8WXT5 416 aaPredicted RBP16.36■□□□□ 0.21
COL6A3-207ENST00000433762 KAZALD1Q96I82 304 aa16.36■□□□□ 0.21
COL6A3-207ENST00000433762 SUCLG2Q96I99 432 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms