RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 COG6Q9Y2V7 657 aa6.28□□□□□ -1.4
PTPN4-203ENST00000430976 RRP15Q9Y3B9 282 aaKnown RBP6.28□□□□□ -1.4
PTPN4-203ENST00000430976 TRIM17Q9Y577 477 aa6.28□□□□□ -1.4
PTPN4-203ENST00000430976 ZC3H4Q9UPT8 1303 aaKnown RBP6.28□□□□□ -1.4
PTPN4-203ENST00000430976 CDKL5O76039 1030 aa6.28□□□□□ -1.4
PTPN4-203ENST00000430976 FLIIQ13045 1269 aa6.28□□□□□ -1.4
PTPN4-203ENST00000430976 KIF4BQ2VIQ3 1234 aa6.28□□□□□ -1.4
PTPN4-203ENST00000430976 GIGYF2Q6Y7W6 1299 aaKnown RBP6.28□□□□□ -1.4
PTPN4-203ENST00000430976 MAMSTRQ6ZN01 415 aa6.28□□□□□ -1.4
PTPN4-203ENST00000430976 SMC2O95347 1197 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 FAM117BQ6P1L5 589 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 SLF2Q8IX21 1173 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 NDUFAF2Q8N183 169 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 HPS3Q969F9 1004 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 RSRC1Q96IZ7 334 aaKnown RBP6.27□□□□□ -1.41
PTPN4-203ENST00000430976 LZTS2Q9BRK4 669 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 ALDH8A1Q9H2A2 487 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-203ENST00000430976 TMEM63CQ9P1W3 806 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 FRMD3A2A2Y4 597 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 EIF3JO75822 258 aaKnown RBP6.27□□□□□ -1.41
PTPN4-203ENST00000430976 USP8P40818 1118 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 TAGLNQ01995 201 aaKnown RBP6.27□□□□□ -1.41
PTPN4-203ENST00000430976 TRAF1Q13077 416 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 MCTP2Q6DN12 878 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 CCDC89Q8N998 374 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 SLC39A3Q9BRY0 314 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 PHF8Q9UPP1 1060 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 SNX16P57768 344 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 AMPD3Q01432 767 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 AGAP9Q5VTM2 703 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 ELOA2Q8IYF1 753 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-203ENST00000430976 DCLK2Q8N568 766 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.27□□□□□ -1.41
PTPN4-203ENST00000430976 IWS1Q96ST2 819 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 LNPKQ9C0E8 428 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 CWC25Q9NXE8 425 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-203ENST00000430976 PPP1R9AQ9ULJ8 1098 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 LIMCH1Q9UPQ0 1083 aa6.27□□□□□ -1.41
PTPN4-203ENST00000430976 MAGED1Q9Y5V3 778 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-203ENST00000430976 PEX19P40855 299 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 MCM2P49736 904 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 MSL1Q68DK7 614 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 YIPF2Q9BWQ6 316 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 THRAP3Q9Y2W1 955 aaKnown RBP6.26□□□□□ -1.41
PTPN4-203ENST00000430976 ZNF330Q9Y3S2 320 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-203ENST00000430976 GJA8P48165 433 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 MRPL28Q13084 256 aaKnown RBP6.26□□□□□ -1.41
PTPN4-203ENST00000430976 DHX8Q14562 1220 aaKnown RBP6.26□□□□□ -1.41
PTPN4-203ENST00000430976 VEZTQ9HBM0 779 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 ANO2Q9NQ90 1003 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 ERBB4Q15303 1308 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 ZNF189O75820 626 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-203ENST00000430976 MCCD1P59942 119 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-203ENST00000430976 NUCB2P80303 420 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 IMMTQ16891 758 aaKnown RBP6.26□□□□□ -1.41
PTPN4-203ENST00000430976 TTC39AQ5SRH9 613 aa6.26□□□□□ -1.41
PTPN4-203ENST00000430976 TTC39BQ5VTQ0 682 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-203ENST00000430976 DZIP3Q86Y13 1208 aaKnown RBP6.26□□□□□ -1.41
PTPN4-203ENST00000430976 A0A1B0GUL7 405 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 GCKP35557 465 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 ALDH1L2Q3SY69 923 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 ODR4Q5SWX8 454 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 SYAP1Q96A49 352 aaPredicted RBP6.25□□□□□ -1.41
PTPN4-203ENST00000430976 TBK1Q9UHD2 729 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 PRIM1P49642 420 aaKnown RBP6.25□□□□□ -1.41
PTPN4-203ENST00000430976 HSP90B2PQ58FF3 399 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 RNF168Q8IYW5 571 aaPredicted RBP6.25□□□□□ -1.41
PTPN4-203ENST00000430976 IPCEF1Q8WWN9 437 aaPredicted RBP6.25□□□□□ -1.41
PTPN4-203ENST00000430976 BIN1O00499 593 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 HDLBPQ00341 1268 aaKnown RBP6.25□□□□□ -1.41
PTPN4-203ENST00000430976 NBPF8Q3BBV2 869 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 HSP90AA5PQ58FG0 334 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 SOGA3Q5TF21 947 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 ZMAT2Q96NC0 199 aaKnown RBP6.25□□□□□ -1.41
PTPN4-203ENST00000430976 CCDC196A0A1B0GTZ2 297 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 OFD1O75665 1012 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 MRE11P49959 708 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 ZBTB17Q13105 803 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 C4orf46Q504U0 113 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 SND1Q7KZF4 910 aaKnown RBP eCLIP6.25□□□□□ -1.41
PTPN4-203ENST00000430976 FAM9CQ8IZT9 166 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 RASSF8Q8NHQ8 419 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 RPGRQ92834 1020 aaKnown RBP6.25□□□□□ -1.41
PTPN4-203ENST00000430976 SNX21Q969T3 373 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 DHX36Q9H2U1 1008 aaKnown RBP6.25□□□□□ -1.41
PTPN4-203ENST00000430976 OGFRQ9NZT2 677 aa6.25□□□□□ -1.41
PTPN4-203ENST00000430976 TIMM44O43615 452 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 AP1G2O75843 785 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 KRT10P13645 584 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 AIMP1Q12904 312 aaKnown RBP6.24□□□□□ -1.41
PTPN4-203ENST00000430976 MAP7D1Q3KQU3 841 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 CCDC174Q6PII3 467 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 RELL1Q8IUW5 271 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 CEP57L1Q8IYX8 460 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 CENPTQ96BT3 561 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 RMDN2Q96LZ7 410 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 SCLT1Q96NL6 688 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 SH3GL3Q99963 347 aa6.24□□□□□ -1.41
PTPN4-203ENST00000430976 PDGFDQ9GZP0 370 aaPredicted RBP6.24□□□□□ -1.41
PTPN4-203ENST00000430976 TMEM127O75204 238 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms