RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 EHBP1L1Q8N3D4 1523 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 CALML4Q96GE6 196 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 PRC1O43663 620 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 TMCO5BA8MYB1 307 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 RFC4P35249 363 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 CLIP2Q9UDT6 1046 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 AMOTL2Q9Y2J4 779 aa17.8■□□□□ 0.44
PTPRF-206ENST00000429895 PRPF4BQ13523 1007 aaKnown RBP17.79■□□□□ 0.44
PTPRF-206ENST00000429895 CCDC183Q5T5S1 534 aa17.79■□□□□ 0.44
PTPRF-206ENST00000429895 LDHAL6AQ6ZMR3 332 aa17.79■□□□□ 0.44
PTPRF-206ENST00000429895 FSIP1Q8NA03 581 aa17.79■□□□□ 0.44
PTPRF-206ENST00000429895 INCENPQ9NQS7 918 aa17.79■□□□□ 0.44
PTPRF-206ENST00000429895 TRMT1Q9NXH9 659 aaKnown RBP17.79■□□□□ 0.44
PTPRF-206ENST00000429895 CEBPAP49715 358 aaPredicted RBP17.78■□□□□ 0.44
PTPRF-206ENST00000429895 BICD1Q96G01 975 aa17.78■□□□□ 0.44
PTPRF-206ENST00000429895 SCAND2PQ9GZW5 306 aaPredicted RBP17.78■□□□□ 0.44
PTPRF-206ENST00000429895 SH2B1Q9NRF2 756 aaPredicted RBP17.78■□□□□ 0.44
PTPRF-206ENST00000429895 USO1O60763 962 aaKnown RBP17.78■□□□□ 0.44
PTPRF-206ENST00000429895 ECM2O94769 699 aaPredicted RBP17.78■□□□□ 0.44
PTPRF-206ENST00000429895 YEATS4O95619 227 aa17.78■□□□□ 0.44
PTPRF-206ENST00000429895 NAIPQ13075 1403 aa17.78■□□□□ 0.44
PTPRF-206ENST00000429895 MICU3Q86XE3 530 aa17.78■□□□□ 0.44
PTPRF-206ENST00000429895 KIF20AO95235 890 aa17.77■□□□□ 0.44
PTPRF-206ENST00000429895 KRT28Q7Z3Y7 464 aa17.77■□□□□ 0.44
PTPRF-206ENST00000429895 CDC5LQ99459 802 aaKnown RBP17.77■□□□□ 0.44
PTPRF-206ENST00000429895 TFIP11Q9UBB9 837 aaKnown RBP17.77■□□□□ 0.44
PTPRF-206ENST00000429895 DBF4Q9UBU7 674 aaPredicted RBP17.77■□□□□ 0.44
PTPRF-206ENST00000429895 F8W031 263 aaPredicted RBP17.77■□□□□ 0.44
PTPRF-206ENST00000429895 STAMBPO95630 424 aa17.77■□□□□ 0.44
PTPRF-206ENST00000429895 USP16Q9Y5T5 823 aa17.77■□□□□ 0.44
PTPRF-206ENST00000429895 HLA-DOAP06340 250 aa17.77■□□□□ 0.44
PTPRF-206ENST00000429895 PDIA4P13667 645 aaKnown RBP17.77■□□□□ 0.44
PTPRF-206ENST00000429895 PLCD3Q8N3E9 789 aa17.77■□□□□ 0.43
PTPRF-206ENST00000429895 TCP11L1Q9NUJ3 509 aa17.77■□□□□ 0.43
PTPRF-206ENST00000429895 CWC25Q9NXE8 425 aaPredicted RBP17.77■□□□□ 0.43
PTPRF-206ENST00000429895 DAPK1P53355 1430 aa17.77■□□□□ 0.43
PTPRF-206ENST00000429895 TSHZ3Q63HK5 1081 aa17.77■□□□□ 0.43
PTPRF-206ENST00000429895 GBP3Q9H0R5 595 aa17.77■□□□□ 0.43
PTPRF-206ENST00000429895 PDE4BQ07343 736 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 WWC3Q9ULE0 1092 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 SHTN1A0MZ66 631 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 CETN1Q12798 172 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 PDCL2Q8N4E4 241 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 SLC26A6Q9BXS9 759 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 BAG3O95817 575 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 GDPD2Q9HCC8 539 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 GJB2P29033 226 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 CHRNA2Q15822 529 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 RARSP54136 660 aaKnown RBP17.76■□□□□ 0.43
PTPRF-206ENST00000429895 MFSD6Q6ZSS7 791 aa17.76■□□□□ 0.43
PTPRF-206ENST00000429895 KIF5BP33176 963 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 IARSP41252 1262 aaKnown RBP17.75■□□□□ 0.43
PTPRF-206ENST00000429895 PAFAH1B1P43034 410 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 NOP2P46087 812 aaKnown RBP17.75■□□□□ 0.43
PTPRF-206ENST00000429895 VTI1AQ96AJ9 217 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 LIMCH1Q9UPQ0 1083 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 TROQ12816 1431 aaPredicted RBP17.75■□□□□ 0.43
PTPRF-206ENST00000429895 ST5P78524 1137 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 ALDH1L2Q3SY69 923 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 C20orf194Q5TEA3 1177 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 CCDC12Q8WUD4 166 aaPredicted RBP17.75■□□□□ 0.43
PTPRF-206ENST00000429895 WDR70Q9NW82 654 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 SNAPC4Q5SXM2 1469 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 ARAP1Q96P48 1450 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 MYO1BO43795 1136 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 SSFA2P28290 1259 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 HLTFQ14527 1009 aaKnown RBP eCLIP17.75■□□□□ 0.43
PTPRF-206ENST00000429895 TTF1Q15361 905 aaPredicted RBP17.75■□□□□ 0.43
PTPRF-206ENST00000429895 GCOM1H8Y6P7 765 aaPredicted RBP17.75■□□□□ 0.43
PTPRF-206ENST00000429895 LDHCP07864 332 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 MYZAPP0CAP1 466 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 NF2P35240 595 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 UBE3BQ7Z3V4 1068 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 EVI5LQ96CN4 794 aa17.75■□□□□ 0.43
PTPRF-206ENST00000429895 FLIIQ13045 1269 aa17.74■□□□□ 0.43
PTPRF-206ENST00000429895 ACSBG1Q96GR2 724 aa17.74■□□□□ 0.43
PTPRF-206ENST00000429895 AMPD3Q01432 767 aa17.74■□□□□ 0.43
PTPRF-206ENST00000429895 MAPK8IP2Q13387 824 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-206ENST00000429895 TMC6Q7Z403 805 aa17.74■□□□□ 0.43
PTPRF-206ENST00000429895 PPP1R42Q7Z4L9 355 aa17.74■□□□□ 0.43
PTPRF-206ENST00000429895 METAP2P50579 478 aaKnown RBP eCLIP17.74■□□□□ 0.43
PTPRF-206ENST00000429895 MAP9Q49MG5 647 aa17.74■□□□□ 0.43
PTPRF-206ENST00000429895 FBXO31Q5XUX0 539 aaPredicted RBP17.74■□□□□ 0.43
PTPRF-206ENST00000429895 ESPNB1AK53 854 aa17.74■□□□□ 0.43
PTPRF-206ENST00000429895 EPRSP07814 1512 aaKnown RBP17.73■□□□□ 0.43
PTPRF-206ENST00000429895 NBPF6Q5VWK0 638 aa17.73■□□□□ 0.43
PTPRF-206ENST00000429895 NBPF5PQ86XG9 351 aaPredicted RBP17.73■□□□□ 0.43
PTPRF-206ENST00000429895 ZNF354CQ86Y25 554 aa17.73■□□□□ 0.43
PTPRF-206ENST00000429895 NBPF4Q96M43 638 aa17.73■□□□□ 0.43
PTPRF-206ENST00000429895 HECW1Q76N89 1606 aa17.73■□□□□ 0.43
PTPRF-206ENST00000429895 SPECC1Q5M775 1068 aa17.73■□□□□ 0.43
PTPRF-206ENST00000429895 IQSEC3Q9UPP2 1182 aaPredicted RBP17.73■□□□□ 0.43
PTPRF-206ENST00000429895 ANXA1P04083 346 aa17.73■□□□□ 0.43
PTPRF-206ENST00000429895 LMAN1P49257 510 aa17.73■□□□□ 0.43
PTPRF-206ENST00000429895 KIF18AQ8NI77 898 aa17.73■□□□□ 0.43
PTPRF-206ENST00000429895 NESP48681 1621 aa17.72■□□□□ 0.43
PTPRF-206ENST00000429895 MRC2Q9UBG0 1479 aa17.72■□□□□ 0.43
PTPRF-206ENST00000429895 CLEC11AQ9Y240 323 aa17.72■□□□□ 0.43
PTPRF-206ENST00000429895 RNF187Q5TA31 235 aaPredicted RBP17.72■□□□□ 0.43
PTPRF-206ENST00000429895 IFNL2Q8IZJ0 200 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms