RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 KIF4BQ2VIQ3 1234 aa14.79□□□□□ -0.04
LDB3-205ENST00000429277 PPP1R42Q7Z4L9 355 aa14.79□□□□□ -0.04
LDB3-205ENST00000429277 MAP3K1Q13233 1512 aa14.78□□□□□ -0.04
LDB3-205ENST00000429277 ALS2CR12Q96Q35 445 aa14.78□□□□□ -0.04
LDB3-205ENST00000429277 GOLGA6L10A0A0M3HER8 536 aa14.78□□□□□ -0.04
LDB3-205ENST00000429277 HOOK3Q86VS8 718 aa14.78□□□□□ -0.04
LDB3-205ENST00000429277 CWC25Q9NXE8 425 aaPredicted RBP14.78□□□□□ -0.04
LDB3-205ENST00000429277 BMP2KLQ5H9B9 411 aa14.78□□□□□ -0.04
LDB3-205ENST00000429277 DYDC1Q8WWB3 177 aa14.78□□□□□ -0.04
LDB3-205ENST00000429277 MPHOSPH6Q99547 160 aaKnown RBP14.78□□□□□ -0.04
LDB3-205ENST00000429277 DMRT2Q9Y5R5 561 aa14.78□□□□□ -0.04
LDB3-205ENST00000429277 ANKRD36BQ8N2N9 1353 aa14.78□□□□□ -0.04
LDB3-205ENST00000429277 ARHGEF11O15085 1522 aa14.77□□□□□ -0.04
LDB3-205ENST00000429277 ABCA10Q8WWZ4 1543 aa14.77□□□□□ -0.04
LDB3-205ENST00000429277 PIP4K2BP78356 416 aa14.77□□□□□ -0.04
LDB3-205ENST00000429277 STAMBPO95630 424 aa14.77□□□□□ -0.04
LDB3-205ENST00000429277 HLA-DOAP06340 250 aa14.77□□□□□ -0.04
LDB3-205ENST00000429277 IARSP41252 1262 aaKnown RBP14.77□□□□□ -0.04
LDB3-205ENST00000429277 GSTO1P78417 241 aa14.77□□□□□ -0.04
LDB3-205ENST00000429277 NESP48681 1621 aa14.77□□□□□ -0.04
LDB3-205ENST00000429277 RBM10P98175 930 aaKnown RBP14.77□□□□□ -0.05
LDB3-205ENST00000429277 STX1AQ16623 288 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 WAPLQ7Z5K2 1190 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 NME9Q86XW9 330 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 MIS18AQ9NYP9 233 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 AMOTL2Q9Y2J4 779 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 CUL7Q14999 1698 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 MCM5P33992 734 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 MAP2K1Q02750 393 aaPredicted RBP14.77□□□□□ -0.05
LDB3-205ENST00000429277 SMC1AQ14683 1233 aaKnown RBP14.77□□□□□ -0.05
LDB3-205ENST00000429277 CAMK4Q16566 473 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 CABP5Q9NP86 173 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 WDR97A6NE52 1622 aa14.77□□□□□ -0.05
LDB3-205ENST00000429277 ZFYP08048 801 aaPredicted RBP14.76□□□□□ -0.05
LDB3-205ENST00000429277 KLHL10Q6JEL2 608 aa14.76□□□□□ -0.05
LDB3-205ENST00000429277 CLIP2Q9UDT6 1046 aa14.76□□□□□ -0.05
LDB3-205ENST00000429277 CDK13Q14004 1512 aaKnown RBP14.76□□□□□ -0.05
LDB3-205ENST00000429277 RRP9O43818 475 aaKnown RBP14.76□□□□□ -0.05
LDB3-205ENST00000429277 DDX12PQ92771 950 aa14.76□□□□□ -0.05
LDB3-205ENST00000429277 THUMPD2Q9BTF0 503 aaKnown RBP14.76□□□□□ -0.05
LDB3-205ENST00000429277 FAM107BQ9H098 131 aa14.76□□□□□ -0.05
LDB3-205ENST00000429277 ZSCAN16Q9H4T2 348 aaPredicted RBP14.76□□□□□ -0.05
LDB3-205ENST00000429277 CCDC172P0C7W6 258 aa14.76□□□□□ -0.05
LDB3-205ENST00000429277 EHBP1Q8NDI1 1231 aa14.76□□□□□ -0.05
LDB3-205ENST00000429277 ARHGAP45Q92619 1136 aa14.76□□□□□ -0.05
LDB3-205ENST00000429277 NUP88Q99567 741 aaPredicted RBP14.76□□□□□ -0.05
LDB3-205ENST00000429277 CCDC8Q9H0W5 538 aaPredicted RBP14.76□□□□□ -0.05
LDB3-205ENST00000429277 GSTTP1A0A1W2PQM5 241 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 NCOA7Q8NI08 942 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 FERMT1Q9BQL6 677 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 PLCD4Q9BRC7 762 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 UBA5Q9GZZ9 404 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 UVSSAQ2YD98 709 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 FSIP1Q8NA03 581 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 GOLIM4O00461 696 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 SMARCA5O60264 1052 aaPredicted RBP14.75□□□□□ -0.05
LDB3-205ENST00000429277 TMTC2Q8N394 836 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 TDRD12Q587J7 1177 aaKnown RBP14.75□□□□□ -0.05
LDB3-205ENST00000429277 MICALCLQ6ZW33 695 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 DDX46Q7L014 1031 aaKnown RBP14.75□□□□□ -0.05
LDB3-205ENST00000429277 RMND1Q9NWS8 449 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 NBPF7P0C2Y1 421 aaPredicted RBP14.75□□□□□ -0.05
LDB3-205ENST00000429277 IFFO1Q0D2I5 559 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 IFI16Q16666 785 aaKnown RBP14.75□□□□□ -0.05
LDB3-205ENST00000429277 MPRIPQ6WCQ1 1025 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 KAT14Q9H8E8 782 aa14.75□□□□□ -0.05
LDB3-205ENST00000429277 MTIF2P46199 727 aaKnown RBP14.74□□□□□ -0.05
LDB3-205ENST00000429277 LDHAL6AQ6ZMR3 332 aa14.74□□□□□ -0.05
LDB3-205ENST00000429277 PTPN23Q9H3S7 1636 aa14.74□□□□□ -0.05
LDB3-205ENST00000429277 CGNQ9P2M7 1197 aaKnown RBP14.74□□□□□ -0.05
LDB3-205ENST00000429277 ZGPATQ8N5A5 531 aaKnown RBP14.74□□□□□ -0.05
LDB3-205ENST00000429277 URI1O94763 535 aaPredicted RBP14.74□□□□□ -0.05
LDB3-205ENST00000429277 SNRPA1P09661 255 aaKnown RBP14.74□□□□□ -0.05
LDB3-205ENST00000429277 TMEM67Q5HYA8 995 aa14.74□□□□□ -0.05
LDB3-205ENST00000429277 MFSD6Q6ZSS7 791 aa14.74□□□□□ -0.05
LDB3-205ENST00000429277 USP37Q86T82 979 aa14.74□□□□□ -0.05
LDB3-205ENST00000429277 UBA7P41226 1012 aa14.73□□□□□ -0.05
LDB3-205ENST00000429277 USP16Q9Y5T5 823 aa14.73□□□□□ -0.05
LDB3-205ENST00000429277 EMILIN1Q9Y6C2 1016 aa14.73□□□□□ -0.05
LDB3-205ENST00000429277 CRNKL1Q9BZJ0 848 aaKnown RBP14.73□□□□□ -0.05
LDB3-205ENST00000429277 ABCC5O15440 1437 aa14.73□□□□□ -0.05
LDB3-205ENST00000429277 CCDC40Q4G0X9 1142 aa14.73□□□□□ -0.05
LDB3-205ENST00000429277 STX6O43752 255 aa14.73□□□□□ -0.05
LDB3-205ENST00000429277 CCDC102BQ68D86 513 aa14.73□□□□□ -0.05
LDB3-205ENST00000429277 NEK1Q96PY6 1258 aa14.73□□□□□ -0.05
LDB3-205ENST00000429277 ERMNQ8TAM6 284 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 CC2D2AQ9P2K1 1620 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 RALGAPBQ86X10 1494 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 TRIM27P14373 513 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 GNAQP50148 359 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 CADPS2Q86UW7 1296 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 KRT23Q9C075 422 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 MAP3K2Q9Y2U5 619 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 TSPY2A6NKD2 308 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 MPNDQ8N594 471 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 PLVAPQ9BX97 442 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 GTPBP4Q9BZE4 634 aaKnown RBP14.72□□□□□ -0.05
LDB3-205ENST00000429277 METAP2P50579 478 aaKnown RBP eCLIP14.72□□□□□ -0.05
LDB3-205ENST00000429277 FERMT2Q96AC1 680 aa14.72□□□□□ -0.05
LDB3-205ENST00000429277 CNNM2Q9H8M5 875 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms