RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 NUP98P52948 1817 aa8.29□□□□□ -1.08
USP54-202ENST00000413442 AFDNP55196 1824 aaKnown RBP8.29□□□□□ -1.08
USP54-202ENST00000413442 ARFGEF1Q9Y6D6 1849 aa8.29□□□□□ -1.08
USP54-202ENST00000413442 IBTKQ9P2D0 1353 aaPredicted RBP8.28□□□□□ -1.08
USP54-202ENST00000413442 A0A0G2JLW4 131 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 KLRG2A4D1S0 409 aaPredicted RBP8.28□□□□□ -1.08
USP54-202ENST00000413442 CCER2I3L3R5 266 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 NPHP1O15259 732 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 KCNA3P22001 575 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 ALDH1B1P30837 517 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 DDR1Q08345 913 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 TBC1D9BQ66K14 1250 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 STYK1Q6J9G0 422 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 SMIM5Q71RC9 77 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 TTLL6Q8N841 843 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 CNKSR1Q969H4 720 aa8.28□□□□□ -1.08
USP54-202ENST00000413442 RRP7AQ9Y3A4 280 aaKnown RBP8.28□□□□□ -1.08
USP54-202ENST00000413442 ZNF330Q9Y3S2 320 aaPredicted RBP8.28□□□□□ -1.08
USP54-202ENST00000413442 BRCA1P38398 1863 aaKnown RBP8.28□□□□□ -1.08
USP54-202ENST00000413442 BCORQ6W2J9 1755 aa8.27□□□□□ -1.08
USP54-202ENST00000413442 SCN7AQ01118 1682 aa8.27□□□□□ -1.08
USP54-202ENST00000413442 DPEP1P16444 411 aa8.27□□□□□ -1.09
USP54-202ENST00000413442 GTF2E1P29083 439 aaPredicted RBP8.27□□□□□ -1.09
USP54-202ENST00000413442 CCDC30Q5VVM6 783 aa8.27□□□□□ -1.09
USP54-202ENST00000413442 CC2D2BQ6DHV5 1058 aa8.27□□□□□ -1.09
USP54-202ENST00000413442 NBPF5PQ86XG9 351 aaPredicted RBP8.27□□□□□ -1.09
USP54-202ENST00000413442 WWC1Q8IX03 1113 aa8.27□□□□□ -1.09
USP54-202ENST00000413442 PELP1Q8IZL8 1130 aaKnown RBP8.27□□□□□ -1.09
USP54-202ENST00000413442 CNBD1Q8NA66 436 aa8.27□□□□□ -1.09
USP54-202ENST00000413442 THUMPD2Q9BTF0 503 aaKnown RBP8.27□□□□□ -1.09
USP54-202ENST00000413442 NIP7Q9Y221 180 aaKnown RBP eCLIP8.27□□□□□ -1.09
USP54-202ENST00000413442 ZC3H4Q9UPT8 1303 aaKnown RBP8.27□□□□□ -1.09
USP54-202ENST00000413442 PXDNLA1KZ92 1463 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 PRAMEF22A3QJZ6 481 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 DDX58O95786 925 aaKnown RBP8.26□□□□□ -1.09
USP54-202ENST00000413442 YBX3P16989 372 aaKnown RBP eCLIP8.26□□□□□ -1.09
USP54-202ENST00000413442 EIF2S2P20042 333 aaKnown RBP8.26□□□□□ -1.09
USP54-202ENST00000413442 TRIM28Q13263 835 aaKnown RBP8.26□□□□□ -1.09
USP54-202ENST00000413442 PDIA6Q15084 440 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 SLC10A5Q5PT55 438 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 HDGFL1Q5TGJ6 251 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 PRR5LQ6MZQ0 368 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 ANKRD13DQ6ZTN6 518 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 ZNF34Q8IZ26 560 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 PLBD2Q8NHP8 589 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 MASTLQ96GX5 879 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 MBIPQ9NS73 344 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 BCS1LQ9Y276 419 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 LAS1LQ9Y4W2 734 aaKnown RBP8.26□□□□□ -1.09
USP54-202ENST00000413442 RIC1Q4ADV7 1423 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 ATP10DQ9P241 1426 aa8.26□□□□□ -1.09
USP54-202ENST00000413442 N4BP2Q86UW6 1770 aaPredicted RBP8.25□□□□□ -1.09
USP54-202ENST00000413442 DLEC1Q9Y238 1755 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 SRGNP10124 158 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 MYL6BP14649 208 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 NPR1P16066 1061 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 TCIRG1Q13488 830 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 DUSP27Q5VZP5 1158 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 BICDL1Q6ZP65 573 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 COPS6Q7L5N1 327 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 LRP10Q7Z4F1 713 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 C2CD5Q86YS7 1000 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 ZNF428Q96B54 188 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 NLRP3Q96P20 1036 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 VPS33BQ9H267 617 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 MYH16Q9H6N6 1097 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 KIAA1551Q9HCM1 1747 aa8.25□□□□□ -1.09
USP54-202ENST00000413442 HOXA10P31260 410 aaPredicted RBP8.24□□□□□ -1.09
USP54-202ENST00000413442 GOLGA2Q08379 1002 aa8.24□□□□□ -1.09
USP54-202ENST00000413442 ARHGAP27Q6ZUM4 889 aa8.24□□□□□ -1.09
USP54-202ENST00000413442 STK31Q9BXU1 1019 aa8.24□□□□□ -1.09
USP54-202ENST00000413442 TMX4Q9H1E5 349 aaPredicted RBP8.24□□□□□ -1.09
USP54-202ENST00000413442 LTBP3Q9NS15 1303 aa8.24□□□□□ -1.09
USP54-202ENST00000413442 HLFQ16534 295 aa8.23□□□□□ -1.09
USP54-202ENST00000413442 CRY2Q49AN0 593 aa8.23□□□□□ -1.09
USP54-202ENST00000413442 CCDC184Q52MB2 194 aa8.23□□□□□ -1.09
USP54-202ENST00000413442 TMC4Q7Z404 712 aa8.23□□□□□ -1.09
USP54-202ENST00000413442 RTKN2Q8IZC4 609 aa8.23□□□□□ -1.09
USP54-202ENST00000413442 CRAMP1Q96RY5 1269 aa8.23□□□□□ -1.09
USP54-202ENST00000413442 UTP14AQ9BVJ6 771 aaKnown RBP8.23□□□□□ -1.09
USP54-202ENST00000413442 BBOX1O75936 387 aa8.22□□□□□ -1.09
USP54-202ENST00000413442 LMNB1P20700 586 aa8.22□□□□□ -1.09
USP54-202ENST00000413442 TWISTNBQ3B726 338 aaPredicted RBP8.22□□□□□ -1.09
USP54-202ENST00000413442 TTLL7Q6ZT98 887 aa8.22□□□□□ -1.09
USP54-202ENST00000413442 FAM9BQ8IZU0 186 aa8.22□□□□□ -1.09
USP54-202ENST00000413442 ZNF784Q8NCA9 323 aaPredicted RBP8.22□□□□□ -1.09
USP54-202ENST00000413442 ZNF622Q969S3 477 aaKnown RBP eCLIP8.22□□□□□ -1.09
USP54-202ENST00000413442 ARFGEF2Q9Y6D5 1785 aa8.22□□□□□ -1.09
USP54-202ENST00000413442 SBF1O95248 1867 aa8.21□□□□□ -1.09
USP54-202ENST00000413442 ANKRD31Q8N7Z5 1873 aa8.21□□□□□ -1.09
USP54-202ENST00000413442 ANKRD36CQ5JPF3 1778 aa8.21□□□□□ -1.1
USP54-202ENST00000413442 CHRNA5P30532 468 aa8.21□□□□□ -1.1
USP54-202ENST00000413442 DPY19L2Q6NUT2 758 aa8.21□□□□□ -1.1
USP54-202ENST00000413442 RIC3Q7Z5B4 369 aa8.21□□□□□ -1.1
USP54-202ENST00000413442 CCDC191Q8NCU4 936 aa8.21□□□□□ -1.1
USP54-202ENST00000413442 XAGE3Q8WTP9 111 aa8.21□□□□□ -1.1
USP54-202ENST00000413442 RBM17Q96I25 401 aaKnown RBP8.21□□□□□ -1.1
USP54-202ENST00000413442 ZBTB3Q9H5J0 574 aa8.21□□□□□ -1.1
USP54-202ENST00000413442 CHPF2Q9P2E5 772 aa8.21□□□□□ -1.1
USP54-202ENST00000413442 KDM2BQ8NHM5 1336 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms