RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 PDE6BP35913 854 aa25.37■■□□□ 1.65
SMARCB1-204ENST00000407422 HLFQ16534 295 aa25.37■■□□□ 1.65
SMARCB1-204ENST00000407422 ZNF622Q969S3 477 aaKnown RBP eCLIP25.35■■□□□ 1.65
SMARCB1-204ENST00000407422 RUNDC1Q96C34 613 aa25.35■■□□□ 1.65
SMARCB1-204ENST00000407422 SENP3-EIF4A1A0A087X0R7 540 aa25.34■■□□□ 1.65
SMARCB1-204ENST00000407422 RASSF7Q02833 373 aa25.34■■□□□ 1.65
SMARCB1-204ENST00000407422 LMOD3Q0VAK6 560 aa25.34■■□□□ 1.65
SMARCB1-204ENST00000407422 NBPF5PQ86XG9 351 aaPredicted RBP25.34■■□□□ 1.65
SMARCB1-204ENST00000407422 NIP7Q9Y221 180 aaKnown RBP eCLIP25.34■■□□□ 1.65
SMARCB1-204ENST00000407422 MYL6BP14649 208 aa25.34■■□□□ 1.65
SMARCB1-204ENST00000407422 ST5P78524 1137 aa25.34■■□□□ 1.65
SMARCB1-204ENST00000407422 RNF181Q9P0P0 153 aa25.34■■□□□ 1.65
SMARCB1-204ENST00000407422 NUP98P52948 1817 aa25.33■■□□□ 1.65
SMARCB1-204ENST00000407422 TRIM35Q9UPQ4 493 aa25.33■■□□□ 1.65
SMARCB1-204ENST00000407422 CACNA1SQ13698 1873 aa25.33■■□□□ 1.65
SMARCB1-204ENST00000407422 KIF3CO14782 793 aa25.32■■□□□ 1.64
SMARCB1-204ENST00000407422 RGL2O15211 777 aa25.32■■□□□ 1.64
SMARCB1-204ENST00000407422 TTLL7Q6ZT98 887 aa25.32■■□□□ 1.64
SMARCB1-204ENST00000407422 PDZRN3Q9UPQ7 1066 aa25.32■■□□□ 1.64
SMARCB1-204ENST00000407422 CCDC88AQ3V6T2 1871 aa25.32■■□□□ 1.64
SMARCB1-204ENST00000407422 FAM177BA6PVY3 158 aa25.31■■□□□ 1.64
SMARCB1-204ENST00000407422 PRELPP51888 382 aa25.3■■□□□ 1.64
SMARCB1-204ENST00000407422 BABAM1Q9NWV8 329 aa25.3■■□□□ 1.64
SMARCB1-204ENST00000407422 SLX4Q8IY92 1834 aa25.3■■□□□ 1.64
SMARCB1-204ENST00000407422 SRGNP10124 158 aa25.3■■□□□ 1.64
SMARCB1-204ENST00000407422 ZNF219Q9P2Y4 722 aaPredicted RBP25.3■■□□□ 1.64
SMARCB1-204ENST00000407422 EIF2S2P20042 333 aaKnown RBP25.29■■□□□ 1.64
SMARCB1-204ENST00000407422 ZEB1P37275 1124 aaPredicted RBP25.29■■□□□ 1.64
SMARCB1-204ENST00000407422 MAP3K15Q6ZN16 1313 aa25.29■■□□□ 1.64
SMARCB1-204ENST00000407422 ERVV-1B6SEH8 477 aa25.28■■□□□ 1.64
SMARCB1-204ENST00000407422 C21orf2O43822 256 aa25.28■■□□□ 1.64
SMARCB1-204ENST00000407422 TPTE2Q6XPS3 522 aa25.28■■□□□ 1.64
SMARCB1-204ENST00000407422 NMRK2Q9NPI5 230 aa25.28■■□□□ 1.64
SMARCB1-204ENST00000407422 NFKBIEO00221 500 aa25.27■■□□□ 1.64
SMARCB1-204ENST00000407422 KIF6Q6ZMV9 814 aa25.27■■□□□ 1.64
SMARCB1-204ENST00000407422 ZBTB3Q9H5J0 574 aa25.27■■□□□ 1.64
SMARCB1-204ENST00000407422 CHL1O00533 1208 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 PDIA6Q15084 440 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 STYK1Q6J9G0 422 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 LAS1LQ9Y4W2 734 aaKnown RBP25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 ERBB4Q15303 1308 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 FER1L6Q2WGJ9 1857 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 LMNB1P20700 586 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 KRT24Q2M2I5 525 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 PROSER3Q2NL68 480 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 LRP10Q7Z4F1 713 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 MASTLQ96GX5 879 aa25.26■■□□□ 1.63
SMARCB1-204ENST00000407422 ARFGEF2Q9Y6D5 1785 aa25.25■■□□□ 1.63
SMARCB1-204ENST00000407422 ANXA1P04083 346 aa25.25■■□□□ 1.63
SMARCB1-204ENST00000407422 CNKSR1Q969H4 720 aa25.25■■□□□ 1.63
SMARCB1-204ENST00000407422 PRPF40BQ6NWY9 871 aaKnown RBP25.24■■□□□ 1.63
SMARCB1-204ENST00000407422 NECTIN2Q92692 538 aa25.24■■□□□ 1.63
SMARCB1-204ENST00000407422 KLRG2A4D1S0 409 aaPredicted RBP25.23■■□□□ 1.63
SMARCB1-204ENST00000407422 GPTP24298 496 aa25.23■■□□□ 1.63
SMARCB1-204ENST00000407422 TNRC6CQ9HCJ0 1690 aaKnown RBP25.22■■□□□ 1.63
SMARCB1-204ENST00000407422 GTF2E1P29083 439 aaPredicted RBP25.22■■□□□ 1.63
SMARCB1-204ENST00000407422 NUTM1Q86Y26 1132 aa25.22■■□□□ 1.63
SMARCB1-204ENST00000407422 UBN2Q6ZU65 1347 aa25.22■■□□□ 1.63
SMARCB1-204ENST00000407422 TIAM2Q8IVF5 1701 aa25.22■■□□□ 1.63
SMARCB1-204ENST00000407422 APAF1O14727 1248 aa25.21■■□□□ 1.63
SMARCB1-204ENST00000407422 CCDC184Q52MB2 194 aa25.21■■□□□ 1.63
SMARCB1-204ENST00000407422 ABCC12Q96J65 1359 aa25.2■■□□□ 1.63
SMARCB1-204ENST00000407422 NPR1P16066 1061 aa25.2■■□□□ 1.62
SMARCB1-204ENST00000407422 KDM2BQ8NHM5 1336 aa25.19■■□□□ 1.62
SMARCB1-204ENST00000407422 GIGYF2Q6Y7W6 1299 aaKnown RBP25.19■■□□□ 1.62
SMARCB1-204ENST00000407422 ZNF34Q8IZ26 560 aa25.19■■□□□ 1.62
SMARCB1-204ENST00000407422 ERFEQ4G0M1 354 aa25.19■■□□□ 1.62
SMARCB1-204ENST00000407422 SUSD4Q5VX71 490 aa25.19■■□□□ 1.62
SMARCB1-204ENST00000407422 NYXQ9GZU5 481 aa25.19■■□□□ 1.62
SMARCB1-204ENST00000407422 DICER1Q9UPY3 1922 aaKnown RBP25.18■■□□□ 1.62
SMARCB1-204ENST00000407422 C7orf43Q8WVR3 580 aa25.18■■□□□ 1.62
SMARCB1-204ENST00000407422 ZC3H4Q9UPT8 1303 aaKnown RBP25.17■■□□□ 1.62
SMARCB1-204ENST00000407422 TOMM70O94826 608 aa25.17■■□□□ 1.62
SMARCB1-204ENST00000407422 CFAP44Q96MT7 982 aa25.17■■□□□ 1.62
SMARCB1-204ENST00000407422 RRAGCQ9HB90 399 aa25.17■■□□□ 1.62
SMARCB1-204ENST00000407422 COPS6Q7L5N1 327 aa25.16■■□□□ 1.62
SMARCB1-204ENST00000407422 TAOK3Q9H2K8 898 aa25.16■■□□□ 1.62
SMARCB1-204ENST00000407422 HSPA6P17066 643 aa25.15■■□□□ 1.62
SMARCB1-204ENST00000407422 AIMP1Q12904 312 aaKnown RBP25.15■■□□□ 1.62
SMARCB1-204ENST00000407422 XAGE3Q8WTP9 111 aa25.15■■□□□ 1.62
SMARCB1-204ENST00000407422 OLFM4Q6UX06 510 aa25.15■■□□□ 1.62
SMARCB1-204ENST00000407422 MBIPQ9NS73 344 aa25.15■■□□□ 1.62
SMARCB1-204ENST00000407422 LTBP3Q9NS15 1303 aa25.14■■□□□ 1.62
SMARCB1-204ENST00000407422 ZNF316A6NFI3 1004 aaPredicted RBP25.14■■□□□ 1.61
SMARCB1-204ENST00000407422 NTSR2O95665 410 aa25.14■■□□□ 1.61
SMARCB1-204ENST00000407422 CRY2Q49AN0 593 aa25.14■■□□□ 1.61
SMARCB1-204ENST00000407422 SOGA3Q5TF21 947 aa25.14■■□□□ 1.61
SMARCB1-204ENST00000407422 DDX21Q9NR30 783 aaKnown RBP eCLIP25.14■■□□□ 1.61
SMARCB1-204ENST00000407422 CHPF2Q9P2E5 772 aa25.14■■□□□ 1.61
SMARCB1-204ENST00000407422 IBTKQ9P2D0 1353 aaPredicted RBP25.14■■□□□ 1.61
SMARCB1-204ENST00000407422 GLTPD2A6NH11 291 aa25.13■■□□□ 1.61
SMARCB1-204ENST00000407422 ANKRD36CQ5JPF3 1778 aa25.13■■□□□ 1.61
SMARCB1-204ENST00000407422 ZNF853P0CG23 659 aa25.12■■□□□ 1.61
SMARCB1-204ENST00000407422 HDGFL1Q5TGJ6 251 aa25.12■■□□□ 1.61
SMARCB1-204ENST00000407422 ALDH1B1P30837 517 aa25.11■■□□□ 1.61
SMARCB1-204ENST00000407422 PARP10Q53GL7 1025 aa25.11■■□□□ 1.61
SMARCB1-204ENST00000407422 CCDC93Q567U6 631 aa25.11■■□□□ 1.61
SMARCB1-204ENST00000407422 DUSP27Q5VZP5 1158 aa25.11■■□□□ 1.61
SMARCB1-204ENST00000407422 C16orf71Q8IYS4 520 aaPredicted RBP25.11■■□□□ 1.61
SMARCB1-204ENST00000407422 HOXB7P09629 217 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms