RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 LUZP1Q86V48 1076 aa25.15■■□□□ 1.62
CTCF-202ENST00000401394 FUCA2Q9BTY2 467 aa25.15■■□□□ 1.62
CTCF-202ENST00000401394 IGSF1Q8N6C5 1336 aa25.15■■□□□ 1.62
CTCF-202ENST00000401394 NRKQ7Z2Y5 1582 aa25.15■■□□□ 1.62
CTCF-202ENST00000401394 STK3Q13188 491 aa25.15■■□□□ 1.62
CTCF-202ENST00000401394 CDC37L1Q7L3B6 337 aa25.14■■□□□ 1.62
CTCF-202ENST00000401394 PDRG1Q9NUG6 133 aa25.14■■□□□ 1.62
CTCF-202ENST00000401394 NRBP1Q9UHY1 535 aa25.14■■□□□ 1.62
CTCF-202ENST00000401394 LRMPQ12912 555 aa25.14■■□□□ 1.61
CTCF-202ENST00000401394 TPCN1Q9ULQ1 816 aa25.14■■□□□ 1.61
CTCF-202ENST00000401394 ARHGEF10O15013 1369 aa25.13■■□□□ 1.61
CTCF-202ENST00000401394 CWF19L2Q2TBE0 894 aaKnown RBP25.13■■□□□ 1.61
CTCF-202ENST00000401394 TTC6Q86TZ1 520 aa25.13■■□□□ 1.61
CTCF-202ENST00000401394 CNTROBQ8N137 903 aa25.13■■□□□ 1.61
CTCF-202ENST00000401394 DIAPH3Q9NSV4 1193 aa25.13■■□□□ 1.61
CTCF-202ENST00000401394 NDUFB9Q9Y6M9 179 aa25.13■■□□□ 1.61
CTCF-202ENST00000401394 POLA2Q14181 598 aa25.13■■□□□ 1.61
CTCF-202ENST00000401394 KLHDC4Q8TBB5 520 aa25.13■■□□□ 1.61
CTCF-202ENST00000401394 FLT4P35916 1363 aa25.12■■□□□ 1.61
CTCF-202ENST00000401394 TUBGCP6Q96RT7 1819 aa25.12■■□□□ 1.61
CTCF-202ENST00000401394 A0A087WWV3 80 aa25.12■■□□□ 1.61
CTCF-202ENST00000401394 PROSER3Q2NL68 480 aa25.12■■□□□ 1.61
CTCF-202ENST00000401394 PTGS1P23219 599 aa25.12■■□□□ 1.61
CTCF-202ENST00000401394 TMEM87AQ8NBN3 555 aa25.12■■□□□ 1.61
CTCF-202ENST00000401394 EDC3Q96F86 508 aaKnown RBP25.12■■□□□ 1.61
CTCF-202ENST00000401394 CCDC8Q9H0W5 538 aaPredicted RBP25.11■■□□□ 1.61
CTCF-202ENST00000401394 BCL2L12Q9HB09 334 aa25.11■■□□□ 1.61
CTCF-202ENST00000401394 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.11■■□□□ 1.61
CTCF-202ENST00000401394 HOXC9P31274 260 aa25.11■■□□□ 1.61
CTCF-202ENST00000401394 KIF1BPQ96EK5 621 aa25.11■■□□□ 1.61
CTCF-202ENST00000401394 TLR7Q9NYK1 1049 aaKnown RBP25.11■■□□□ 1.61
CTCF-202ENST00000401394 USP31Q70CQ4 1352 aa25.11■■□□□ 1.61
CTCF-202ENST00000401394 NAA30Q147X3 362 aaPredicted RBP25.11■■□□□ 1.61
CTCF-202ENST00000401394 PPP4R3BQ5MIZ7 849 aa25.11■■□□□ 1.61
CTCF-202ENST00000401394 SIL1Q9H173 461 aa25.1■■□□□ 1.61
CTCF-202ENST00000401394 SSH2Q76I76 1423 aa25.1■■□□□ 1.61
CTCF-202ENST00000401394 ITSN1Q15811 1721 aa25.1■■□□□ 1.61
CTCF-202ENST00000401394 AKAP12Q02952 1782 aa25.1■■□□□ 1.61
CTCF-202ENST00000401394 BEND3Q5T5X7 828 aa25.1■■□□□ 1.61
CTCF-202ENST00000401394 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.1■■□□□ 1.61
CTCF-202ENST00000401394 RIOK3O14730 519 aaKnown RBP25.09■■□□□ 1.61
CTCF-202ENST00000401394 FOSBP53539 338 aa25.09■■□□□ 1.61
CTCF-202ENST00000401394 DDX11Q96FC9 970 aa25.09■■□□□ 1.61
CTCF-202ENST00000401394 AMOTL2Q9Y2J4 779 aa25.09■■□□□ 1.61
CTCF-202ENST00000401394 KDRP35968 1356 aa25.09■■□□□ 1.61
CTCF-202ENST00000401394 FAM184AQ8NB25 1140 aa25.09■■□□□ 1.61
CTCF-202ENST00000401394 MAP7D2Q96T17 732 aa25.09■■□□□ 1.61
CTCF-202ENST00000401394 SBNO1A3KN83 1393 aa25.08■■□□□ 1.61
CTCF-202ENST00000401394 KCNJ4P48050 445 aa25.08■■□□□ 1.61
CTCF-202ENST00000401394 MPRIPQ6WCQ1 1025 aa25.08■■□□□ 1.61
CTCF-202ENST00000401394 UVSSAQ2YD98 709 aa25.08■■□□□ 1.6
CTCF-202ENST00000401394 RGPD1P0DJD0 1748 aa25.08■■□□□ 1.6
CTCF-202ENST00000401394 SETD1BQ9UPS6 1966 aaKnown RBP25.07■■□□□ 1.6
CTCF-202ENST00000401394 DNAAF4Q8WXU2 420 aa25.07■■□□□ 1.6
CTCF-202ENST00000401394 CCDC94Q9BW85 323 aaPredicted RBP25.07■■□□□ 1.6
CTCF-202ENST00000401394 LARP1BQ659C4 914 aaKnown RBP25.07■■□□□ 1.6
CTCF-202ENST00000401394 KIAA1524Q8TCG1 905 aa25.07■■□□□ 1.6
CTCF-202ENST00000401394 IL17RAQ96F46 866 aa25.07■■□□□ 1.6
CTCF-202ENST00000401394 XRN1Q8IZH2 1706 aaKnown RBP25.06■■□□□ 1.6
CTCF-202ENST00000401394 PTPRUQ92729 1446 aa25.06■■□□□ 1.6
CTCF-202ENST00000401394 RAB11FIP3O75154 756 aa25.06■■□□□ 1.6
CTCF-202ENST00000401394 AACSQ86V21 672 aa25.06■■□□□ 1.6
CTCF-202ENST00000401394 LRRC59Q96AG4 307 aaKnown RBP25.06■■□□□ 1.6
CTCF-202ENST00000401394 RBM8AQ9Y5S9 174 aaKnown RBP25.06■■□□□ 1.6
CTCF-202ENST00000401394 ADAMTS13Q76LX8 1427 aa25.06■■□□□ 1.6
CTCF-202ENST00000401394 ABTB2Q8N961 1025 aa25.05■■□□□ 1.6
CTCF-202ENST00000401394 BOLA2Q9H3K6 86 aa25.05■■□□□ 1.6
CTCF-202ENST00000401394 CCDC9Q9Y3X0 531 aaKnown RBP25.05■■□□□ 1.6
CTCF-202ENST00000401394 KIF3AQ9Y496 699 aa25.05■■□□□ 1.6
CTCF-202ENST00000401394 U2AF2P26368 475 aaKnown RBP eCLIP25.05■■□□□ 1.67e-12■■■■■ 54.7
CTCF-202ENST00000401394 CEBPZQ03701 1054 aaKnown RBP25.05■■□□□ 1.6
CTCF-202ENST00000401394 AIMP1Q12904 312 aaKnown RBP25.05■■□□□ 1.6
CTCF-202ENST00000401394 DACT1Q9NYF0 836 aa25.05■■□□□ 1.6
CTCF-202ENST00000401394 CYP46A1Q9Y6A2 500 aa25.05■■□□□ 1.6
CTCF-202ENST00000401394 MAP3K5Q99683 1374 aa25.04■■□□□ 1.6
CTCF-202ENST00000401394 NMIQ13287 307 aaPredicted RBP25.04■■□□□ 1.6
CTCF-202ENST00000401394 MRVI1Q9Y6F6 885 aa25.04■■□□□ 1.6
CTCF-202ENST00000401394 A0A0D9SFI3 127 aa25.03■■□□□ 1.6
CTCF-202ENST00000401394 EIF4A1P60842 406 aaKnown RBP25.03■■□□□ 1.6
CTCF-202ENST00000401394 SPTLC3Q9NUV7 552 aa25.03■■□□□ 1.6
CTCF-202ENST00000401394 LARP1Q6PKG0 1096 aaKnown RBP25.03■■□□□ 1.6
CTCF-202ENST00000401394 CCDC186Q7Z3E2 898 aa25.03■■□□□ 1.6
CTCF-202ENST00000401394 C16orf45Q96MC5 204 aaPredicted RBP25.03■■□□□ 1.6
CTCF-202ENST00000401394 NBPF6Q5VWK0 638 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 CREB3L3Q68CJ9 461 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 NBPF4Q96M43 638 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 TMEM2Q9UHN6 1383 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 JAK2O60674 1132 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 ZSCAN20P17040 1043 aaPredicted RBP25.02■■□□□ 1.6
CTCF-202ENST00000401394 ZSWIM6Q9HCJ5 1215 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 MAP3K2Q9Y2U5 619 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 TECPR2O15040 1411 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 NECTIN1Q15223 517 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 ANO6Q4KMQ2 910 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 CLASRPQ8N2M8 674 aaKnown RBP25.02■■□□□ 1.6
CTCF-202ENST00000401394 EAF2Q96CJ1 260 aaPredicted RBP25.02■■□□□ 1.6
CTCF-202ENST00000401394 LRRC2Q9BYS8 371 aa25.02■■□□□ 1.6
CTCF-202ENST00000401394 C9orf78Q9NZ63 289 aaPredicted RBP25.02■■□□□ 1.6
CTCF-202ENST00000401394 AOX1Q06278 1338 aa25.01■■□□□ 1.59
CTCF-202ENST00000401394 IFIT2P09913 472 aaKnown RBP25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms