RNA–Protein interactions for RNA: ENST00000400814.3

PRAMEF1-202, Transcript of PRAME family member 1, humanhuman

TSL 1 (best)

Gene PRAMEF1, Length 1,327 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF1-202ENST00000400814 CFHP08603 1231 aa12.76□□□□□ -0.37
PRAMEF1-202ENST00000400814 SOX11P35716 441 aa12.76□□□□□ -0.37
PRAMEF1-202ENST00000400814 FAM98CQ17RN3 349 aaKnown RBP12.76□□□□□ -0.37
PRAMEF1-202ENST00000400814 PRR7Q8TB68 274 aa12.76□□□□□ -0.37
PRAMEF1-202ENST00000400814 MARF1Q9Y4F3 1742 aaKnown RBP12.76□□□□□ -0.37
PRAMEF1-202ENST00000400814 ARHGAP33O14559 1287 aa12.75□□□□□ -0.37
PRAMEF1-202ENST00000400814 BRD1O95696 1058 aa12.75□□□□□ -0.37
PRAMEF1-202ENST00000400814 LMOD1P29536 600 aaPredicted RBP12.75□□□□□ -0.37
PRAMEF1-202ENST00000400814 XPCQ01831 940 aaPredicted RBP12.75□□□□□ -0.37
PRAMEF1-202ENST00000400814 WDR43Q15061 677 aaKnown RBP eCLIP12.75□□□□□ -0.37
PRAMEF1-202ENST00000400814 RGS22Q8NE09 1264 aa12.75□□□□□ -0.37
PRAMEF1-202ENST00000400814 EMILIN1Q9Y6C2 1016 aa12.75□□□□□ -0.37
PRAMEF1-202ENST00000400814 PXDNQ92626 1479 aa12.74□□□□□ -0.37
PRAMEF1-202ENST00000400814 HNRNPUQ00839 825 aaKnown RBP eCLIP12.74□□□□□ -0.37
PRAMEF1-202ENST00000400814 NR6A1Q15406 480 aa12.74□□□□□ -0.37
PRAMEF1-202ENST00000400814 SAMD7Q7Z3H4 446 aa12.74□□□□□ -0.37
PRAMEF1-202ENST00000400814 DDX17Q92841 729 aaKnown RBP12.74□□□□□ -0.37
PRAMEF1-202ENST00000400814 UCN2Q96RP3 112 aa12.74□□□□□ -0.37
PRAMEF1-202ENST00000400814 TFIP11Q9UBB9 837 aaKnown RBP12.74□□□□□ -0.37
PRAMEF1-202ENST00000400814 SHPRHQ149N8 1683 aa12.74□□□□□ -0.37
PRAMEF1-202ENST00000400814 BLMP54132 1417 aaPredicted RBP12.73□□□□□ -0.37
PRAMEF1-202ENST00000400814 SOS2Q07890 1332 aaPredicted RBP12.73□□□□□ -0.37
PRAMEF1-202ENST00000400814 CENPBP07199 599 aaPredicted RBP12.73□□□□□ -0.37
PRAMEF1-202ENST00000400814 MFAP1P55081 439 aaKnown RBP12.73□□□□□ -0.37
PRAMEF1-202ENST00000400814 KCNA1Q09470 495 aa12.73□□□□□ -0.37
PRAMEF1-202ENST00000400814 RRS1Q15050 365 aaKnown RBP12.73□□□□□ -0.37
PRAMEF1-202ENST00000400814 NUTM2GQ5VZR2 741 aa12.73□□□□□ -0.37
PRAMEF1-202ENST00000400814 ALS2Q96Q42 1657 aa12.73□□□□□ -0.37
PRAMEF1-202ENST00000400814 CDK12Q9NYV4 1490 aaPredicted RBP12.73□□□□□ -0.37
PRAMEF1-202ENST00000400814 USP19O94966 1318 aa12.72□□□□□ -0.37
PRAMEF1-202ENST00000400814 SPATA31A3Q5VYP0 1347 aa12.72□□□□□ -0.37
PRAMEF1-202ENST00000400814 DIAPH1O60610 1272 aaKnown RBP12.72□□□□□ -0.37
PRAMEF1-202ENST00000400814 KCNH5Q8NCM2 988 aa12.72□□□□□ -0.37
PRAMEF1-202ENST00000400814 NUDCQ9Y266 331 aa12.72□□□□□ -0.37
PRAMEF1-202ENST00000400814 KIF24Q5T7B8 1368 aa12.72□□□□□ -0.37
PRAMEF1-202ENST00000400814 MAP3K19Q56UN5 1328 aa12.71□□□□□ -0.37
PRAMEF1-202ENST00000400814 IL13P35225 146 aa12.71□□□□□ -0.37
PRAMEF1-202ENST00000400814 SEMA3FQ13275 785 aa12.71□□□□□ -0.37
PRAMEF1-202ENST00000400814 POTEEQ6S8J3 1075 aa12.71□□□□□ -0.37
PRAMEF1-202ENST00000400814 SLIT3O75094 1523 aa12.71□□□□□ -0.37
PRAMEF1-202ENST00000400814 ZBED9Q6R2W3 1325 aa12.7□□□□□ -0.38
PRAMEF1-202ENST00000400814 PPM1GO15355 546 aaPredicted RBP12.7□□□□□ -0.38
PRAMEF1-202ENST00000400814 GCP02774 474 aa12.7□□□□□ -0.38
PRAMEF1-202ENST00000400814 DMRTA1Q5VZB9 504 aa12.7□□□□□ -0.38
PRAMEF1-202ENST00000400814 RETREG3Q86VR2 466 aa12.7□□□□□ -0.38
PRAMEF1-202ENST00000400814 TNS3Q68CZ2 1445 aa12.7□□□□□ -0.38
PRAMEF1-202ENST00000400814 NFAT5O94916 1531 aa12.7□□□□□ -0.38
PRAMEF1-202ENST00000400814 PNMA1Q8ND90 353 aa12.69□□□□□ -0.38
PRAMEF1-202ENST00000400814 MTMR7Q9Y216 660 aa12.69□□□□□ -0.38
PRAMEF1-202ENST00000400814 NHSL1Q5SYE7 1610 aa12.69□□□□□ -0.38
PRAMEF1-202ENST00000400814 PEAK1Q9H792 1746 aa12.69□□□□□ -0.38
PRAMEF1-202ENST00000400814 CARNS1A5YM72 827 aa12.68□□□□□ -0.38
PRAMEF1-202ENST00000400814 KMT5BQ4FZB7 885 aa12.68□□□□□ -0.38
PRAMEF1-202ENST00000400814 LAPTM4BQ86VI4 370 aa12.68□□□□□ -0.38
PRAMEF1-202ENST00000400814 ARHGEF10O15013 1369 aa12.68□□□□□ -0.38
PRAMEF1-202ENST00000400814 FLT4P35916 1363 aa12.68□□□□□ -0.38
PRAMEF1-202ENST00000400814 IQSEC2Q5JU85 1478 aa12.68□□□□□ -0.38
PRAMEF1-202ENST00000400814 TOM1O60784 492 aa12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 ATG7O95352 703 aa12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 U2AF1L5P0DN76 240 aaPredicted RBP12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 AMPHP49418 695 aa12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 U2AF1Q01081 240 aaKnown RBP eCLIP12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 HSP90AB2PQ58FF8 381 aa12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 ARHGEF25Q86VW2 580 aa12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 RUNDC1Q96C34 613 aa12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 VPS9D1Q9Y2B5 631 aa12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 MED1Q15648 1581 aaPredicted RBP12.67□□□□□ -0.38
PRAMEF1-202ENST00000400814 HOXC9P31274 260 aa12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 EIF4A2Q14240 407 aaKnown RBP12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 MORN1Q5T089 497 aa12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 DESI1Q6ICB0 168 aa12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 NGEFQ8N5V2 710 aa12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 IP6K1Q92551 441 aa12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 PLEKHF1Q96S99 279 aa12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 AXIN2Q9Y2T1 843 aa12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 MAFBQ9Y5Q3 323 aaPredicted RBP12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 RTL1A6NKG5 1358 aa12.66□□□□□ -0.38
PRAMEF1-202ENST00000400814 PHRF1Q9P1Y6 1649 aaKnown RBP12.65□□□□□ -0.38
PRAMEF1-202ENST00000400814 U2SURPO15042 1029 aaKnown RBP12.65□□□□□ -0.38
PRAMEF1-202ENST00000400814 RNF40O75150 1001 aa12.65□□□□□ -0.38
PRAMEF1-202ENST00000400814 CCDC146Q8IYE0 955 aa12.65□□□□□ -0.38
PRAMEF1-202ENST00000400814 PNNQ9H307 717 aaKnown RBP12.65□□□□□ -0.38
PRAMEF1-202ENST00000400814 ROBO1Q9Y6N7 1651 aa12.65□□□□□ -0.38
PRAMEF1-202ENST00000400814 AHDC1Q5TGY3 1603 aaPredicted RBP12.65□□□□□ -0.38
PRAMEF1-202ENST00000400814 TBC1D9Q6ZT07 1266 aa12.64□□□□□ -0.39
PRAMEF1-202ENST00000400814 ERBB3P21860 1342 aa12.64□□□□□ -0.39
PRAMEF1-202ENST00000400814 CRYBG1Q9Y4K1 1723 aa12.64□□□□□ -0.39
PRAMEF1-202ENST00000400814 APAF1O14727 1248 aa12.63□□□□□ -0.39
PRAMEF1-202ENST00000400814 Q3C1V9 767 aa12.63□□□□□ -0.39
PRAMEF1-202ENST00000400814 VARS2Q5ST30 1063 aaKnown RBP12.63□□□□□ -0.39
PRAMEF1-202ENST00000400814 LRRC59Q96AG4 307 aaKnown RBP12.63□□□□□ -0.39
PRAMEF1-202ENST00000400814 VRTNQ9H8Y1 702 aa12.63□□□□□ -0.39
PRAMEF1-202ENST00000400814 SLC27A5Q9Y2P5 690 aa12.63□□□□□ -0.39
PRAMEF1-202ENST00000400814 LTN1O94822 1766 aa12.63□□□□□ -0.39
PRAMEF1-202ENST00000400814 ACTN4O43707 911 aaKnown RBP12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 NR1H3Q13133 447 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 PUS10Q3MIT2 529 aaKnown RBP12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 LYPD8Q6UX82 237 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 RGPD1P0DJD0 1748 aa12.62□□□□□ -0.39
PRAMEF1-202ENST00000400814 ZNF521Q96K83 1311 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms