RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 CACNA1SQ13698 1873 aa13.75□□□□□ -0.21
NEDD8-202ENST00000396828 FER1L6Q2WGJ9 1857 aa13.74□□□□□ -0.21
NEDD8-202ENST00000396828 GLTPD2A6NH11 291 aa13.74□□□□□ -0.21
NEDD8-202ENST00000396828 POTECB2RU33 542 aa13.74□□□□□ -0.21
NEDD8-202ENST00000396828 PDE6BP35913 854 aa13.74□□□□□ -0.21
NEDD8-202ENST00000396828 DLG5Q8TDM6 1919 aa13.73□□□□□ -0.21
NEDD8-202ENST00000396828 SNRPA1P09661 255 aaKnown RBP13.73□□□□□ -0.21
NEDD8-202ENST00000396828 FSTL1Q12841 308 aa13.73□□□□□ -0.21
NEDD8-202ENST00000396828 CNBD1Q8NA66 436 aa13.73□□□□□ -0.21
NEDD8-202ENST00000396828 RTF1Q92541 710 aaKnown RBP13.73□□□□□ -0.21
NEDD8-202ENST00000396828 SRGNP10124 158 aa13.72□□□□□ -0.21
NEDD8-202ENST00000396828 HLFQ16534 295 aa13.72□□□□□ -0.21
NEDD8-202ENST00000396828 ZC3H4Q9UPT8 1303 aaKnown RBP13.71□□□□□ -0.21
NEDD8-202ENST00000396828 DICER1Q9UPY3 1922 aaKnown RBP13.71□□□□□ -0.21
NEDD8-202ENST00000396828 TAF7Q15545 349 aaPredicted RBP13.71□□□□□ -0.21
NEDD8-202ENST00000396828 FAM177BA6PVY3 158 aa13.7□□□□□ -0.22
NEDD8-202ENST00000396828 VEGFAP15692 232 aaPredicted RBP13.7□□□□□ -0.22
NEDD8-202ENST00000396828 PRPF40BQ6NWY9 871 aaKnown RBP13.7□□□□□ -0.22
NEDD8-202ENST00000396828 OLFM4Q6UX06 510 aa13.7□□□□□ -0.22
NEDD8-202ENST00000396828 NPM2Q86SE8 214 aaKnown RBP13.7□□□□□ -0.22
NEDD8-202ENST00000396828 KLRG1Q96E93 195 aa13.7□□□□□ -0.22
NEDD8-202ENST00000396828 PLEKHF1Q96S99 279 aa13.7□□□□□ -0.22
NEDD8-202ENST00000396828 THUMPD2Q9BTF0 503 aaKnown RBP13.7□□□□□ -0.22
NEDD8-202ENST00000396828 ARFGEF2Q9Y6D5 1785 aa13.69□□□□□ -0.22
NEDD8-202ENST00000396828 NPHP1O15259 732 aa13.69□□□□□ -0.22
NEDD8-202ENST00000396828 HTATSF1O43719 755 aaKnown RBP13.69□□□□□ -0.22
NEDD8-202ENST00000396828 ST5P78524 1137 aa13.69□□□□□ -0.22
NEDD8-202ENST00000396828 ERFEQ4G0M1 354 aa13.69□□□□□ -0.22
NEDD8-202ENST00000396828 STYK1Q6J9G0 422 aa13.69□□□□□ -0.22
NEDD8-202ENST00000396828 CLEC4GQ6UXB4 293 aa13.69□□□□□ -0.22
NEDD8-202ENST00000396828 NBPF5PQ86XG9 351 aaPredicted RBP13.69□□□□□ -0.22
NEDD8-202ENST00000396828 SMC1BQ8NDV3 1235 aa13.69□□□□□ -0.22
NEDD8-202ENST00000396828 C7orf43Q8WVR3 580 aa13.69□□□□□ -0.22
NEDD8-202ENST00000396828 PDZRN3Q9UPQ7 1066 aa13.69□□□□□ -0.22
NEDD8-202ENST00000396828 KDM3BQ7LBC6 1761 aa13.68□□□□□ -0.22
NEDD8-202ENST00000396828 KLRG2A4D1S0 409 aaPredicted RBP13.68□□□□□ -0.22
NEDD8-202ENST00000396828 POTEIP0CG38 1075 aa13.68□□□□□ -0.22
NEDD8-202ENST00000396828 POTEJP0CG39 1038 aa13.68□□□□□ -0.22
NEDD8-202ENST00000396828 MIER1Q8N108 512 aa13.68□□□□□ -0.22
NEDD8-202ENST00000396828 NGEFQ8N5V2 710 aa13.68□□□□□ -0.22
NEDD8-202ENST00000396828 CNKSR1Q969H4 720 aa13.68□□□□□ -0.22
NEDD8-202ENST00000396828 MASTLQ96GX5 879 aa13.68□□□□□ -0.22
NEDD8-202ENST00000396828 TAOK3Q9H2K8 898 aa13.68□□□□□ -0.22
NEDD8-202ENST00000396828 NIP7Q9Y221 180 aaKnown RBP eCLIP13.68□□□□□ -0.22
NEDD8-202ENST00000396828 DDNO94850 711 aaPredicted RBP13.67□□□□□ -0.22
NEDD8-202ENST00000396828 LAMB4A4D0S4 1761 aa13.67□□□□□ -0.22
NEDD8-202ENST00000396828 LTBP3Q9NS15 1303 aa13.66□□□□□ -0.22
NEDD8-202ENST00000396828 EIF4A1P60842 406 aaKnown RBP13.66□□□□□ -0.22
NEDD8-202ENST00000396828 TTLL7Q6ZT98 887 aa13.66□□□□□ -0.22
NEDD8-202ENST00000396828 SLC51AQ86UW1 340 aa13.66□□□□□ -0.22
NEDD8-202ENST00000396828 JMYQ8N9B5 988 aa13.66□□□□□ -0.22
NEDD8-202ENST00000396828 ZNF652Q9Y2D9 606 aa13.66□□□□□ -0.22
NEDD8-202ENST00000396828 NUP98P52948 1817 aa13.65□□□□□ -0.22
NEDD8-202ENST00000396828 NFE2L2Q16236 605 aa13.65□□□□□ -0.22
NEDD8-202ENST00000396828 DPY19L2Q6NUT2 758 aa13.65□□□□□ -0.22
NEDD8-202ENST00000396828 PRKRIP1Q9H875 184 aaPredicted RBP13.65□□□□□ -0.22
NEDD8-202ENST00000396828 RRP7AQ9Y3A4 280 aaKnown RBP13.65□□□□□ -0.22
NEDD8-202ENST00000396828 ABCC12Q96J65 1359 aa13.64□□□□□ -0.23
NEDD8-202ENST00000396828 NPR1P16066 1061 aa13.64□□□□□ -0.23
NEDD8-202ENST00000396828 RALBP1Q15311 655 aa13.64□□□□□ -0.23
NEDD8-202ENST00000396828 TPTE2Q6XPS3 522 aa13.64□□□□□ -0.23
NEDD8-202ENST00000396828 PPP4R3CPQ6ZMV5 832 aa13.64□□□□□ -0.23
NEDD8-202ENST00000396828 NUTM1Q86Y26 1132 aa13.64□□□□□ -0.23
NEDD8-202ENST00000396828 MYL6BP14649 208 aa13.63□□□□□ -0.23
NEDD8-202ENST00000396828 COL13A1Q5TAT6 717 aaPredicted RBP13.63□□□□□ -0.23
NEDD8-202ENST00000396828 ZNF277Q9NRM2 450 aaPredicted RBP13.63□□□□□ -0.23
NEDD8-202ENST00000396828 UBN2Q6ZU65 1347 aa13.63□□□□□ -0.23
NEDD8-202ENST00000396828 KCNA4P22459 653 aa13.62□□□□□ -0.23
NEDD8-202ENST00000396828 GPTP24298 496 aa13.62□□□□□ -0.23
NEDD8-202ENST00000396828 CCDC93Q567U6 631 aa13.62□□□□□ -0.23
NEDD8-202ENST00000396828 ZNF541Q9H0D2 1346 aa13.62□□□□□ -0.23
NEDD8-202ENST00000396828 RGL2O15211 777 aa13.61□□□□□ -0.23
NEDD8-202ENST00000396828 C3orf67Q6ZVT6 689 aa13.61□□□□□ -0.23
NEDD8-202ENST00000396828 ZBTB3Q9H5J0 574 aa13.61□□□□□ -0.23
NEDD8-202ENST00000396828 SNED1Q8TER0 1413 aa13.61□□□□□ -0.23
NEDD8-202ENST00000396828 MAP3K15Q6ZN16 1313 aa13.61□□□□□ -0.23
NEDD8-202ENST00000396828 ERVV-1B6SEH8 477 aa13.6□□□□□ -0.23
NEDD8-202ENST00000396828 CCER2I3L3R5 266 aa13.6□□□□□ -0.23
NEDD8-202ENST00000396828 ANXA1P04083 346 aa13.6□□□□□ -0.23
NEDD8-202ENST00000396828 FKBP4Q02790 459 aaKnown RBP eCLIP13.6□□□□□ -0.23
NEDD8-202ENST00000396828 CRY2Q49AN0 593 aa13.6□□□□□ -0.23
NEDD8-202ENST00000396828 SOGA3Q5TF21 947 aa13.6□□□□□ -0.23
NEDD8-202ENST00000396828 SUSD4Q5VX71 490 aa13.6□□□□□ -0.23
NEDD8-202ENST00000396828 LRP10Q7Z4F1 713 aa13.6□□□□□ -0.23
NEDD8-202ENST00000396828 PNISRQ8TF01 805 aaKnown RBP13.6□□□□□ -0.23
NEDD8-202ENST00000396828 COL4A5P29400 1685 aa13.59□□□□□ -0.23
NEDD8-202ENST00000396828 NEFMP07197 916 aa13.59□□□□□ -0.23
NEDD8-202ENST00000396828 GTF2E1P29083 439 aaPredicted RBP13.59□□□□□ -0.23
NEDD8-202ENST00000396828 PDIA6Q15084 440 aa13.59□□□□□ -0.23
NEDD8-202ENST00000396828 PROSER3Q2NL68 480 aa13.59□□□□□ -0.23
NEDD8-202ENST00000396828 CHADLQ6NUI6 762 aa13.59□□□□□ -0.23
NEDD8-202ENST00000396828 SYNE4Q8N205 404 aa13.59□□□□□ -0.23
NEDD8-202ENST00000396828 ALDH1B1P30837 517 aa13.58□□□□□ -0.24
NEDD8-202ENST00000396828 RIPK4P57078 832 aa13.58□□□□□ -0.24
NEDD8-202ENST00000396828 KIF6Q6ZMV9 814 aa13.58□□□□□ -0.24
NEDD8-202ENST00000396828 ZNF34Q8IZ26 560 aa13.58□□□□□ -0.24
NEDD8-202ENST00000396828 L3MBTL3Q96JM7 780 aaPredicted RBP13.58□□□□□ -0.24
NEDD8-202ENST00000396828 TAF1DQ9H5J8 278 aaPredicted RBP13.58□□□□□ -0.24
NEDD8-202ENST00000396828 TSPYL4Q9UJ04 414 aa13.58□□□□□ -0.24
NEDD8-202ENST00000396828 MYBBP1AQ9BQG0 1328 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms