RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 SIL1Q9H173 461 aa13.33□□□□□ -0.27
VPS13A-205ENST00000376636 CACNA2D3Q8IZS8 1091 aa13.33□□□□□ -0.28
VPS13A-205ENST00000376636 CNGA1P29973 690 aa13.33□□□□□ -0.28
VPS13A-205ENST00000376636 TRIM7Q9C029 511 aa13.33□□□□□ -0.28
VPS13A-205ENST00000376636 SAMD15Q9P1V8 674 aa13.33□□□□□ -0.28
VPS13A-205ENST00000376636 SH3BGRP55822 239 aaPredicted RBP13.33□□□□□ -0.28
VPS13A-205ENST00000376636 CCDC129Q6ZRS4 1044 aa13.33□□□□□ -0.28
VPS13A-205ENST00000376636 CFAP157Q5JU67 520 aa13.33□□□□□ -0.28
VPS13A-205ENST00000376636 CCDC63Q8NA47 563 aa13.33□□□□□ -0.28
VPS13A-205ENST00000376636 TCP11L1Q9NUJ3 509 aa13.33□□□□□ -0.28
VPS13A-205ENST00000376636 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.33□□□□□ -0.289e-7■■□□□ 14
VPS13A-205ENST00000376636 AKAP2Q9Y2D5 859 aa13.33□□□□□ -0.28
VPS13A-205ENST00000376636 HDGFL1Q5TGJ6 251 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 TTC36A6NLP5 189 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 SH2D4BQ5SQS7 431 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 ERCC6LQ2NKX8 1250 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 RNF168Q8IYW5 571 aaPredicted RBP13.32□□□□□ -0.28
VPS13A-205ENST00000376636 CTCFLQ8NI51 663 aaPredicted RBP13.32□□□□□ -0.28
VPS13A-205ENST00000376636 CIB2O75838 187 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 TMC6Q7Z403 805 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 PPFIBP2Q8ND30 876 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 PPFIA2O75334 1257 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 WDR63Q8IWG1 891 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 TXNDC16Q9P2K2 825 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.32□□□□□ -0.283e-6■■■■□ 26.1
VPS13A-205ENST00000376636 TCHPQ9BT92 498 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 C1orf115Q9H7X2 142 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 MICALL1Q8N3F8 863 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 VCXQ9H320 206 aa13.32□□□□□ -0.28
VPS13A-205ENST00000376636 RABGAP1Q9Y3P9 1069 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 CAPN2P17655 700 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 ATRIPQ8WXE1 791 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 RMND1Q9NWS8 449 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 CCDC40Q4G0X9 1142 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 SYCP3Q8IZU3 236 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 TRMT1Q9NXH9 659 aaKnown RBP13.31□□□□□ -0.28
VPS13A-205ENST00000376636 SLC4A2P04920 1241 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 ZNF853P0CG23 659 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 CEP128Q6ZU80 1094 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 RAPGEF2Q9Y4G8 1499 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 ZNF428Q96B54 188 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 SATB1Q01826 763 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 CCDC144CPQ8IYA2 1237 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 ZFP91Q96JP5 570 aaPredicted RBP13.31□□□□□ -0.28
VPS13A-205ENST00000376636 MPHOSPH6Q99547 160 aaKnown RBP13.31□□□□□ -0.28
VPS13A-205ENST00000376636 PLEKHH2Q8IVE3 1493 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 CCDC194A0A1B0GVG4 234 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 ATP5DP30049 168 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 NAA25Q14CX7 972 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 IQCA1Q86XH1 822 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 CCDC50Q8IVM0 306 aa13.31□□□□□ -0.28
VPS13A-205ENST00000376636 SUDS3Q9H7L9 328 aaPredicted RBP13.3□□□□□ -0.28
VPS13A-205ENST00000376636 GBP1P32455 592 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 ATP2C2O75185 946 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 XPCQ01831 940 aaPredicted RBP13.3□□□□□ -0.28
VPS13A-205ENST00000376636 MVPQ14764 893 aaKnown RBP13.3□□□□□ -0.28
VPS13A-205ENST00000376636 TCERG1LQ5VWI1 586 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 SEPT10Q9P0V9 454 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 IGHMBP2P38935 993 aaKnown RBP13.3□□□□□ -0.28
VPS13A-205ENST00000376636 CCDC114Q96M63 670 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 SLC12A7Q9Y666 1083 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 SRGAP3O43295 1099 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 CPLX4Q7Z7G2 160 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 TUBBP07437 444 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 ADCY5O95622 1261 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 ATF7IPQ6VMQ6 1270 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 LMNTD2Q8IXW0 634 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 NUF2Q9BZD4 464 aa13.3□□□□□ -0.28
VPS13A-205ENST00000376636 GNG11P61952 73 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 B4GALNT4Q76KP1 1039 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 CTAGE15A4D2H0 777 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 CTAGE8P0CG41 777 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 CYLC1P35663 651 aaPredicted RBP13.29□□□□□ -0.28
VPS13A-205ENST00000376636 CTAGE6Q86UF2 777 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 CTAGE4Q8IX94 777 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 SH3BP5O60239 455 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 RNF41Q9H4P4 317 aaPredicted RBP13.29□□□□□ -0.28
VPS13A-205ENST00000376636 RAB11FIP3O75154 756 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 GSTA5Q7RTV2 222 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 UBE2Q2Q8WVN8 375 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 LMBR1Q8WVP7 490 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 RPGRIP1LQ68CZ1 1315 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 PRPF31Q8WWY3 499 aaKnown RBP13.29□□□□□ -0.28
VPS13A-205ENST00000376636 PUF60Q9UHX1 559 aaKnown RBP13.29□□□□□ -0.28
VPS13A-205ENST00000376636 RFC1P35251 1148 aaPredicted RBP13.29□□□□□ -0.28
VPS13A-205ENST00000376636 SSRP1Q08945 709 aaKnown RBP13.29□□□□□ -0.28
VPS13A-205ENST00000376636 PHF23Q9BUL5 403 aaPredicted RBP13.29□□□□□ -0.28
VPS13A-205ENST00000376636 A6NNZ2 444 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 TUBB8Q3ZCM7 444 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 CEP126Q9P2H0 1117 aa13.29□□□□□ -0.28
VPS13A-205ENST00000376636 FAM177BA6PVY3 158 aa13.28□□□□□ -0.28
VPS13A-205ENST00000376636 GAS8O95995 478 aa13.28□□□□□ -0.28
VPS13A-205ENST00000376636 UTP14AQ9BVJ6 771 aaKnown RBP13.28□□□□□ -0.28
VPS13A-205ENST00000376636 MKNK2Q9HBH9 465 aa13.28□□□□□ -0.28
VPS13A-205ENST00000376636 STX6O43752 255 aa13.28□□□□□ -0.28
VPS13A-205ENST00000376636 LIG1P18858 919 aa13.28□□□□□ -0.28
VPS13A-205ENST00000376636 FMNL3Q8IVF7 1028 aa13.28□□□□□ -0.28
VPS13A-205ENST00000376636 NAPBQ9H115 298 aa13.28□□□□□ -0.28
VPS13A-205ENST00000376636 MYO1BO43795 1136 aa13.28□□□□□ -0.28
VPS13A-205ENST00000376636 USP25Q9UHP3 1055 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms