RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 TMTC2Q8N394 836 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 PIBF1Q8WXW3 757 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 SWAP70Q9UH65 585 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 TRIM27P14373 513 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 GGNBP2Q9H3C7 697 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 KIF24Q5T7B8 1368 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 AOX1Q06278 1338 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 PSME1Q06323 249 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 TRIM14Q14142 442 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 MYRIPQ8NFW9 859 aa11.74□□□□□ -0.53
PTCH1-204ENST00000375290 CYLC1P35663 651 aaPredicted RBP11.74□□□□□ -0.53
PTCH1-204ENST00000375290 A0A1B0GUL7 405 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 CCDC102BQ68D86 513 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 HDXQ7Z353 690 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 AACSQ86V21 672 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.73□□□□□ -0.53
PTCH1-204ENST00000375290 HMOX1P09601 288 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 NBPF11Q86T75 865 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 KRT86O43790 486 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 IFFO1Q0D2I5 559 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 C8orf34Q49A92 452 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 RSRC1Q96IZ7 334 aaKnown RBP11.73□□□□□ -0.53
PTCH1-204ENST00000375290 SSH2Q76I76 1423 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 SSH1Q8WYL5 1049 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 NUP88Q99567 741 aaPredicted RBP11.73□□□□□ -0.53
PTCH1-204ENST00000375290 CCDC178Q5BJE1 867 aa11.73□□□□□ -0.53
PTCH1-204ENST00000375290 LARP1Q6PKG0 1096 aaKnown RBP11.72□□□□□ -0.53
PTCH1-204ENST00000375290 CNNM3Q8NE01 707 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 ZNF500O60304 480 aaPredicted RBP11.72□□□□□ -0.53
PTCH1-204ENST00000375290 BRPF1P55201 1214 aaPredicted RBP11.72□□□□□ -0.53
PTCH1-204ENST00000375290 SKILP12757 684 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 LMAN1P49257 510 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 CWC27Q6UX04 472 aaKnown RBP11.72□□□□□ -0.53
PTCH1-204ENST00000375290 KCNH5Q8NCM2 988 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 PPFIA3O75145 1194 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 NDC80O14777 642 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 ATP8B1O43520 1251 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 GNAT3A8MTJ3 354 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 HOXA7P31268 230 aaPredicted RBP11.72□□□□□ -0.53
PTCH1-204ENST00000375290 AIMP1Q12904 312 aaKnown RBP11.72□□□□□ -0.53
PTCH1-204ENST00000375290 UTP14CQ5TAP6 766 aaKnown RBP11.72□□□□□ -0.53
PTCH1-204ENST00000375290 ADGBQ8N7X0 1667 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 PIK3R4Q99570 1358 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 WWC2Q6AWC2 1192 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 STXBP4Q6ZWJ1 553 aa11.72□□□□□ -0.53
PTCH1-204ENST00000375290 ZNF644Q9H582 1327 aaPredicted RBP11.71□□□□□ -0.53
PTCH1-204ENST00000375290 ZFYP08048 801 aaPredicted RBP11.71□□□□□ -0.53
PTCH1-204ENST00000375290 DNAJC21Q5F1R6 531 aaKnown RBP11.71□□□□□ -0.53
PTCH1-204ENST00000375290 TTC12Q9H892 705 aaPredicted RBP11.71□□□□□ -0.53
PTCH1-204ENST00000375290 SETSIPP0DME0 302 aa11.71□□□□□ -0.53
PTCH1-204ENST00000375290 TMEM266Q2M3C6 531 aa11.71□□□□□ -0.53
PTCH1-204ENST00000375290 TTC31Q49AM3 519 aaPredicted RBP11.71□□□□□ -0.53
PTCH1-204ENST00000375290 RASAL2Q9UJF2 1139 aa11.71□□□□□ -0.53
PTCH1-204ENST00000375290 SPG7Q9UQ90 795 aa11.71□□□□□ -0.53
PTCH1-204ENST00000375290 NUTM1Q86Y26 1132 aa11.71□□□□□ -0.53
PTCH1-204ENST00000375290 CNGA4Q8IV77 575 aa11.71□□□□□ -0.53
PTCH1-204ENST00000375290 LMBR1Q8WVP7 490 aa11.71□□□□□ -0.53
PTCH1-204ENST00000375290 SSFA2P28290 1259 aa11.71□□□□□ -0.54
PTCH1-204ENST00000375290 GTF2F1P35269 517 aaKnown RBP eCLIP11.71□□□□□ -0.54
PTCH1-204ENST00000375290 CFAP70Q5T0N1 1121 aa11.71□□□□□ -0.54
PTCH1-204ENST00000375290 A0A087WZG4 1122 aa11.71□□□□□ -0.54
PTCH1-204ENST00000375290 CEP126Q9P2H0 1117 aa11.71□□□□□ -0.54
PTCH1-204ENST00000375290 CACNA2D4Q7Z3S7 1137 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 BRAPQ7Z569 592 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 DNMT1P26358 1616 aaKnown RBP11.7□□□□□ -0.54
PTCH1-204ENST00000375290 TSR2Q969E8 191 aaKnown RBP11.7□□□□□ -0.54
PTCH1-204ENST00000375290 TANGO6Q9C0B7 1094 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 HYPKQ9NX55 129 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 CCDC155Q8N6L0 562 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 SREK1Q8WXA9 508 aaKnown RBP11.7□□□□□ -0.54
PTCH1-204ENST00000375290 ZFYVE27Q5T4F4 411 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 USP37Q86T82 979 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 CENPHQ9H3R5 247 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 CCDC9Q9Y3X0 531 aaKnown RBP11.7□□□□□ -0.54
PTCH1-204ENST00000375290 PLEKHG5O94827 1062 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 PRM3Q9NNZ6 103 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 ECHDC1Q9NTX5 307 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 BLMP54132 1417 aaPredicted RBP11.7□□□□□ -0.54
PTCH1-204ENST00000375290 TRAF1Q13077 416 aa11.7□□□□□ -0.54
PTCH1-204ENST00000375290 DDX46Q7L014 1031 aaKnown RBP11.7□□□□□ -0.54
PTCH1-204ENST00000375290 KDM4AO75164 1064 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 SELENOOQ9BVL4 669 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 RAPGEF6Q8TEU7 1601 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 MPHOSPH8Q99549 860 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 ATP5DP30049 168 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 TAX1BP1Q86VP1 789 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 IFT74Q96LB3 600 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 LTV1Q96GA3 475 aaPredicted RBP11.69□□□□□ -0.54
PTCH1-204ENST00000375290 CAPN2P17655 700 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 GNG11P61952 73 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 FBXW7Q969H0 707 aa11.69□□□□□ -0.54
PTCH1-204ENST00000375290 MSL1Q68DK7 614 aa11.68□□□□□ -0.54
PTCH1-204ENST00000375290 GJB2P29033 226 aa11.68□□□□□ -0.54
PTCH1-204ENST00000375290 BABAM1Q9NWV8 329 aa11.68□□□□□ -0.54
PTCH1-204ENST00000375290 PRAG1Q86YV5 1406 aa11.68□□□□□ -0.54
PTCH1-204ENST00000375290 PLXNC1O60486 1568 aa11.68□□□□□ -0.54
PTCH1-204ENST00000375290 TTC21AQ8NDW8 1320 aa11.68□□□□□ -0.54
PTCH1-204ENST00000375290 MLECQ14165 292 aa11.68□□□□□ -0.54
PTCH1-204ENST00000375290 CCDC77Q9BR77 488 aa11.68□□□□□ -0.54
PTCH1-204ENST00000375290 CCDC61Q9Y6R9 512 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms