RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 CCDC83Q8IWF9 413 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 PPRC1Q5VV67 1664 aaKnown RBP6.52□□□□□ -1.37
ATG4A-204ENST00000372246 SBNO2Q9Y2G9 1366 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 MYOM2P54296 1465 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 NPATQ14207 1427 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 VPS37CA5D8V6 355 aaPredicted RBP6.52□□□□□ -1.37
ATG4A-204ENST00000372246 KDM4AO75164 1064 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 MBD3O95983 291 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 FOSBP53539 338 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 FBXO31Q5XUX0 539 aaPredicted RBP6.52□□□□□ -1.37
ATG4A-204ENST00000372246 SULT6B1Q6IMI4 303 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 ZNF771Q7L3S4 317 aaPredicted RBP6.52□□□□□ -1.37
ATG4A-204ENST00000372246 ERCC4Q92889 916 aaPredicted RBP6.52□□□□□ -1.37
ATG4A-204ENST00000372246 CFAP44Q96MT7 982 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 API5Q9BZZ5 524 aaKnown RBP6.52□□□□□ -1.37
ATG4A-204ENST00000372246 CHMP4BQ9H444 224 aaKnown RBP6.52□□□□□ -1.37
ATG4A-204ENST00000372246 IFT57Q9NWB7 429 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 TCHHQ07283 1943 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 CAMSAP1Q5T5Y3 1602 aa6.52□□□□□ -1.37
ATG4A-204ENST00000372246 RGS12O14924 1447 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 FAM135BQ49AJ0 1406 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 USP27XA6NNY8 438 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 RAPGEF3O95398 923 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 LIG1P18858 919 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 SYT1P21579 422 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 MCM5P33992 734 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 HAP1P54257 671 aaPredicted RBP6.51□□□□□ -1.37
ATG4A-204ENST00000372246 AK2P54819 239 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 NCBP1Q09161 790 aaKnown RBP6.51□□□□□ -1.37
ATG4A-204ENST00000372246 ADCK5Q3MIX3 580 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 KIAA1524Q8TCG1 905 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 ARHGAP45Q92619 1136 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 UPF1Q92900 1129 aaKnown RBP eCLIP6.51□□□□□ -1.37
ATG4A-204ENST00000372246 TERF2IPQ9NYB0 399 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 TFIP11Q9UBB9 837 aaKnown RBP6.51□□□□□ -1.37
ATG4A-204ENST00000372246 PIK3R4Q99570 1358 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 ARHGAP31Q2M1Z3 1444 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 CUL4AQ13619 759 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 CWC27Q6UX04 472 aaKnown RBP6.51□□□□□ -1.37
ATG4A-204ENST00000372246 RUFY3Q7L099 469 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 CCDC186Q7Z3E2 898 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 STAC3Q96MF2 364 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 EMILIN3Q9NT22 766 aa6.51□□□□□ -1.37
ATG4A-204ENST00000372246 MX1P20591 662 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 HDGFL2Q7Z4V5 671 aaPredicted RBP6.5□□□□□ -1.37
ATG4A-204ENST00000372246 TAF6LQ9Y6J9 622 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 MROH1Q8NDA8 1641 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 TET3O43151 1660 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 ADGRL1O94910 1474 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 HMGN5P82970 282 aaKnown RBP6.5□□□□□ -1.37
ATG4A-204ENST00000372246 CCDC183Q5T5S1 534 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 SPNS2Q8IVW8 549 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 DRC7Q8IY82 874 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 TMEM51Q9NW97 253 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 TRMT1Q9NXH9 659 aaKnown RBP6.5□□□□□ -1.37
ATG4A-204ENST00000372246 LRRFIP2Q9Y608 721 aaKnown RBP6.5□□□□□ -1.37
ATG4A-204ENST00000372246 ATP7AQ04656 1500 aa6.5□□□□□ -1.37
ATG4A-204ENST00000372246 FANCAO15360 1455 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 NRXN1Q9ULB1 1477 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 ZSCAN22P10073 491 aaPredicted RBP6.49□□□□□ -1.37
ATG4A-204ENST00000372246 BRPF1P55201 1214 aaPredicted RBP6.49□□□□□ -1.37
ATG4A-204ENST00000372246 CEBPZQ03701 1054 aaKnown RBP6.49□□□□□ -1.37
ATG4A-204ENST00000372246 ST3GAL1Q11201 340 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 CCDC144BQ3MJ40 725 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 HSP90AB2PQ58FF8 381 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 UTP14CQ5TAP6 766 aaKnown RBP6.49□□□□□ -1.37
ATG4A-204ENST00000372246 POTEEQ6S8J3 1075 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 TEX2Q8IWB9 1127 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 CCDC144CPQ8IYA2 1237 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 LRRN4CLQ8ND94 238 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 RTF1Q92541 710 aaKnown RBP6.49□□□□□ -1.37
ATG4A-204ENST00000372246 DDX11Q96FC9 970 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 PRIMPOLQ96LW4 560 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 SPTLC3Q9NUV7 552 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 SNX14Q9Y5W7 946 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 RIMBP3CA6NJZ7 1639 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 RIMBP3BA6NNM3 1639 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 RIMBP3Q9UFD9 1639 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 RIMS2Q9UQ26 1411 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 GLI2P10070 1586 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 PNPLA6Q8IY17 1366 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 STX6O43752 255 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 ANXA1P04083 346 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 CHGBP05060 677 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 CASTP20810 708 aaKnown RBP6.49□□□□□ -1.37
ATG4A-204ENST00000372246 GJB2P29033 226 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 GTF2F1P35269 517 aaKnown RBP eCLIP6.49□□□□□ -1.37
ATG4A-204ENST00000372246 PTH1RQ03431 593 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 STK3Q13188 491 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 PTPN21Q16825 1174 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 MTERF4Q7Z6M4 381 aaKnown RBP6.49□□□□□ -1.37
ATG4A-204ENST00000372246 RPAP2Q8IXW5 612 aaPredicted RBP6.49□□□□□ -1.37
ATG4A-204ENST00000372246 FUCA2Q9BTY2 467 aa6.49□□□□□ -1.37
ATG4A-204ENST00000372246 TBC1D12O60347 775 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 CAMK2BQ13554 666 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 SYAP1Q96A49 352 aaPredicted RBP6.48□□□□□ -1.37
ATG4A-204ENST00000372246 LRRCC1Q9C099 1032 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 YTHDC2Q9H6S0 1430 aaKnown RBP6.48□□□□□ -1.37
ATG4A-204ENST00000372246 MYO3AQ8NEV4 1616 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 KIF1BO60333 1816 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 170.9 ms