RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 GPSM3Q9Y4H4 160 aa5.02□□□□□ -1.61
MCF2-202ENST00000370573 MROH2AA6NES4 1674 aa5.02□□□□□ -1.61
MCF2-202ENST00000370573 UHRF1BP1Q6BDS2 1440 aa5.02□□□□□ -1.61
MCF2-202ENST00000370573 MADDQ8WXG6 1647 aa5.02□□□□□ -1.61
MCF2-202ENST00000370573 KIF1BO60333 1816 aa5.02□□□□□ -1.61
MCF2-202ENST00000370573 ZBBXA8MT70 800 aa5.02□□□□□ -1.61
MCF2-202ENST00000370573 RBM25P49756 843 aaKnown RBP5.02□□□□□ -1.61
MCF2-202ENST00000370573 TBC1D2BQ9UPU7 963 aa5.02□□□□□ -1.61
MCF2-202ENST00000370573 ZNF330Q9Y3S2 320 aaPredicted RBP5.02□□□□□ -1.61
MCF2-202ENST00000370573 PCDHB9Q9Y5E1 797 aa5.02□□□□□ -1.61
MCF2-202ENST00000370573 NEURL4Q96JN8 1562 aa5.01□□□□□ -1.61
MCF2-202ENST00000370573 TNRQ92752 1358 aa5.01□□□□□ -1.61
MCF2-202ENST00000370573 ADGRB3O60242 1522 aa5.01□□□□□ -1.61
MCF2-202ENST00000370573 C3P01024 1663 aa5.01□□□□□ -1.61
MCF2-202ENST00000370573 ZNF326Q5BKZ1 582 aaKnown RBP5.01□□□□□ -1.61
MCF2-202ENST00000370573 ADGRF5Q8IZF2 1346 aa5.01□□□□□ -1.61
MCF2-202ENST00000370573 GPR37L1O60883 481 aa5.01□□□□□ -1.61
MCF2-202ENST00000370573 BMP2P12643 396 aa5.01□□□□□ -1.61
MCF2-202ENST00000370573 SCARF1Q14162 830 aa5.01□□□□□ -1.61
MCF2-202ENST00000370573 EMILIN1Q9Y6C2 1016 aa5.01□□□□□ -1.61
MCF2-202ENST00000370573 RIMS1Q86UR5 1692 aaKnown RBP5.01□□□□□ -1.61
MCF2-202ENST00000370573 TMEM131LA2VDJ0 1609 aa5□□□□□ -1.61
MCF2-202ENST00000370573 PRAG1Q86YV5 1406 aa5□□□□□ -1.61
MCF2-202ENST00000370573 NBPF1Q3BBV0 1214 aa5□□□□□ -1.61
MCF2-202ENST00000370573 NBPF20Q3BBV1 942 aa5□□□□□ -1.61
MCF2-202ENST00000370573 NDUFB9Q9Y6M9 179 aa5□□□□□ -1.61
MCF2-202ENST00000370573 MYO5BQ9ULV0 1848 aa5□□□□□ -1.61
MCF2-202ENST00000370573 RPGRIP1LQ68CZ1 1315 aa5□□□□□ -1.61
MCF2-202ENST00000370573 GIGYF1O75420 1035 aaPredicted RBP5□□□□□ -1.61
MCF2-202ENST00000370573 VEGFBP49765 207 aa5□□□□□ -1.61
MCF2-202ENST00000370573 LINC00528Q8N1L1 170 aa5□□□□□ -1.61
MCF2-202ENST00000370573 AGBL1Q96MI9 1066 aa5□□□□□ -1.61
MCF2-202ENST00000370573 A2ML1A8K2U0 1454 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 ERVH48-1M5A8F1 160 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 KIFC2Q96AC6 838 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 HIRIP3Q9BW71 556 aaPredicted RBP4.99□□□□□ -1.61
MCF2-202ENST00000370573 GDPD2Q9HCC8 539 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 IFT172Q9UG01 1749 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 CARNS1A5YM72 827 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 POM121CA8CG34 1229 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 UPP2O95045 317 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 MEIOBQ8N635 442 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 ZNF784Q8NCA9 323 aaPredicted RBP4.99□□□□□ -1.61
MCF2-202ENST00000370573 PGPEP1Q9NXJ5 209 aa4.99□□□□□ -1.61
MCF2-202ENST00000370573 CDV3Q9UKY7 258 aaKnown RBP4.99□□□□□ -1.61
MCF2-202ENST00000370573 NEXMIFQ5QGS0 1516 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 PPLO60437 1756 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 PTPRMP28827 1452 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 MYOM2P54296 1465 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 RALGAPBQ86X10 1494 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 NRXN1Q9ULB1 1477 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 HSPA5P11021 654 aaKnown RBP4.98□□□□□ -1.61
MCF2-202ENST00000370573 RELBQ01201 579 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 CFAP70Q5T0N1 1121 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 NLRP1Q9C000 1473 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 DHX9Q08211 1270 aaKnown RBP4.98□□□□□ -1.61
MCF2-202ENST00000370573 NR1H3Q13133 447 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 ZNF395Q9H8N7 513 aaPredicted RBP4.98□□□□□ -1.61
MCF2-202ENST00000370573 CYLDQ9NQC7 956 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 RIMS2Q9UQ26 1411 aa4.98□□□□□ -1.61
MCF2-202ENST00000370573 TRPM1Q7Z4N2 1603 aa4.97□□□□□ -1.61
MCF2-202ENST00000370573 FIGNL2A6NMB9 653 aa4.97□□□□□ -1.61
MCF2-202ENST00000370573 MAN1A2O60476 641 aa4.97□□□□□ -1.61
MCF2-202ENST00000370573 ADD1P35611 737 aaKnown RBP4.97□□□□□ -1.61
MCF2-202ENST00000370573 ABL2P42684 1182 aa4.97□□□□□ -1.61
MCF2-202ENST00000370573 C14orf93Q9H972 538 aaKnown RBP4.97□□□□□ -1.61
MCF2-202ENST00000370573 ZFYVE9O95405 1425 aa4.97□□□□□ -1.61
MCF2-202ENST00000370573 UBR1Q8IWV7 1749 aa4.97□□□□□ -1.61
MCF2-202ENST00000370573 GPRASP1Q5JY77 1395 aa4.97□□□□□ -1.61
MCF2-202ENST00000370573 LTKP29376 864 aa4.97□□□□□ -1.61
MCF2-202ENST00000370573 CARD11Q9BXL7 1154 aa4.97□□□□□ -1.61
MCF2-202ENST00000370573 ROCK2O75116 1388 aaKnown RBP4.96□□□□□ -1.61
MCF2-202ENST00000370573 TMEM2Q9UHN6 1383 aa4.96□□□□□ -1.61
MCF2-202ENST00000370573 PIK3C2GO75747 1445 aa4.96□□□□□ -1.62
MCF2-202ENST00000370573 EIF4G2P78344 907 aaKnown RBP eCLIP4.96□□□□□ -1.62
MCF2-202ENST00000370573 VAC14Q08AM6 782 aa4.96□□□□□ -1.62
MCF2-202ENST00000370573 TSEN34Q9BSV6 310 aaKnown RBP4.96□□□□□ -1.62
MCF2-202ENST00000370573 SETD1BQ9UPS6 1966 aaKnown RBP4.96□□□□□ -1.62
MCF2-202ENST00000370573 KDM5AP29375 1690 aaKnown RBP4.96□□□□□ -1.62
MCF2-202ENST00000370573 MYO3AQ8NEV4 1616 aa4.96□□□□□ -1.62
MCF2-202ENST00000370573 ESPNB1AK53 854 aa4.96□□□□□ -1.62
MCF2-202ENST00000370573 NFX1Q12986 1120 aaKnown RBP4.96□□□□□ -1.62
MCF2-202ENST00000370573 TREML4Q6UXN2 200 aa4.96□□□□□ -1.62
MCF2-202ENST00000370573 Q6ZVU0 165 aa4.96□□□□□ -1.62
MCF2-202ENST00000370573 GLMNQ92990 594 aa4.96□□□□□ -1.62
MCF2-202ENST00000370573 TERTO14746 1132 aaKnown RBP4.95□□□□□ -1.62
MCF2-202ENST00000370573 LILRA1O75019 489 aa4.95□□□□□ -1.62
MCF2-202ENST00000370573 WFS1O76024 890 aa4.95□□□□□ -1.62
MCF2-202ENST00000370573 TMEM132EQ6IEE7 984 aa4.95□□□□□ -1.62
MCF2-202ENST00000370573 THEMISQ8N1K5 641 aaPredicted RBP4.95□□□□□ -1.62
MCF2-202ENST00000370573 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.95□□□□□ -1.62
MCF2-202ENST00000370573 CALR3Q96L12 384 aaKnown RBP4.95□□□□□ -1.62
MCF2-202ENST00000370573 INSM2Q96T92 566 aaPredicted RBP4.95□□□□□ -1.62
MCF2-202ENST00000370573 DNMT3LQ9UJW3 386 aa4.95□□□□□ -1.62
MCF2-202ENST00000370573 USP47Q96K76 1375 aa4.95□□□□□ -1.62
MCF2-202ENST00000370573 KIAA1210Q9ULL0 1709 aa4.95□□□□□ -1.62
MCF2-202ENST00000370573 ARHGAP23Q9P227 1491 aa4.95□□□□□ -1.62
MCF2-202ENST00000370573 ST20-MTHFSA0A0A6YYL1 179 aa4.95□□□□□ -1.62
MCF2-202ENST00000370573 TXNDC2Q86VQ3 553 aa4.95□□□□□ -1.62
MCF2-202ENST00000370573 NXF1Q9UBU9 619 aaKnown RBP4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms