RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 CEBPAP49715 358 aaPredicted RBP11.25□□□□□ -0.61
CHD3-202ENST00000358181 CFAP100Q494V2 611 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 NUP88Q99567 741 aaPredicted RBP11.25□□□□□ -0.61
CHD3-202ENST00000358181 ANKFY1Q9P2R3 1169 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 ZNF652Q9Y2D9 606 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 C6orf163Q5TEZ5 329 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 CABP5Q9NP86 173 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 BTBD11A6QL63 1104 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 CDKL5O76039 1030 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 ZBTB16Q05516 673 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 GSTA5Q7RTV2 222 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 MAATS1Q7Z4T9 603 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 TTC30AQ86WT1 665 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 DACT3Q96B18 629 aaPredicted RBP11.25□□□□□ -0.61
CHD3-202ENST00000358181 SPATA32Q96LK8 384 aa11.25□□□□□ -0.61
CHD3-202ENST00000358181 FILIP1Q7Z7B0 1213 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 AEBP1Q8IUX7 1158 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 TTC30BQ8N4P2 665 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 NACA2Q9H009 215 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 GJA3Q9Y6H8 435 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 IL1RAPL2Q9NP60 686 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 NCBP1Q09161 790 aaKnown RBP11.24□□□□□ -0.61
CHD3-202ENST00000358181 CCDC184Q52MB2 194 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 PDZRN3Q9UPQ7 1066 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 CEP83Q9Y592 693 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 EEF2P13639 858 aaKnown RBP11.24□□□□□ -0.61
CHD3-202ENST00000358181 KIF5AQ12840 1032 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 KIF21BO75037 1637 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 CCDC40Q4G0X9 1142 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 IQCGQ9H095 443 aaKnown RBP11.24□□□□□ -0.61
CHD3-202ENST00000358181 CACYBPQ9HB71 228 aaKnown RBP11.24□□□□□ -0.61
CHD3-202ENST00000358181 CEP131Q9UPN4 1083 aa11.24□□□□□ -0.61
CHD3-202ENST00000358181 GOLGA8AA7E2F4 631 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 GOLGA8BA8MQT2 603 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 PPP2R5DQ14738 602 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 LRRC9Q6ZRR7 1453 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 PICALMQ13492 652 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 NBPF8Q3BBV2 869 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 LARP1BQ659C4 914 aaKnown RBP11.23□□□□□ -0.61
CHD3-202ENST00000358181 FBF1Q8TES7 1133 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 FAM184BQ9ULE4 1060 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 NAA25Q14CX7 972 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 ATF7IPQ6VMQ6 1270 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 ITM2BQ9Y287 266 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 MCM10Q7L590 875 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 CCDC50Q8IVM0 306 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 TCHPQ9BT92 498 aa11.23□□□□□ -0.61
CHD3-202ENST00000358181 UPF3BQ9BZI7 483 aaKnown RBP11.23□□□□□ -0.61
CHD3-202ENST00000358181 AKNAQ7Z591 1439 aa11.22□□□□□ -0.61
CHD3-202ENST00000358181 CCDC6Q16204 474 aa11.22□□□□□ -0.61
CHD3-202ENST00000358181 TAOK3Q9H2K8 898 aa11.22□□□□□ -0.61
CHD3-202ENST00000358181 IMMTQ16891 758 aaKnown RBP11.22□□□□□ -0.61
CHD3-202ENST00000358181 GAS2L2Q8NHY3 880 aa11.22□□□□□ -0.61
CHD3-202ENST00000358181 TMOD3Q9NYL9 352 aa11.22□□□□□ -0.61
CHD3-202ENST00000358181 NOL3O60936 208 aaKnown RBP11.22□□□□□ -0.61
CHD3-202ENST00000358181 IRX5P78411 483 aaPredicted RBP11.22□□□□□ -0.61
CHD3-202ENST00000358181 ANO3Q9BYT9 981 aa11.22□□□□□ -0.61
CHD3-202ENST00000358181 STARD3NLO95772 234 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 CETN1Q12798 172 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 JAKMIP1Q96N16 626 aaKnown RBP11.21□□□□□ -0.61
CHD3-202ENST00000358181 GNAI2P04899 355 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 PPFIA1Q13136 1202 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 SPATA17Q96L03 361 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 STX6O43752 255 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 CCDC192P0DO97 292 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 MTIF2P46199 727 aaKnown RBP11.21□□□□□ -0.61
CHD3-202ENST00000358181 ARID5AQ03989 594 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 DIXDC1Q155Q3 683 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 PDRG1Q9NUG6 133 aa11.21□□□□□ -0.61
CHD3-202ENST00000358181 LMOD1P29536 600 aaPredicted RBP11.21□□□□□ -0.62
CHD3-202ENST00000358181 WASF1Q92558 559 aa11.21□□□□□ -0.62
CHD3-202ENST00000358181 GMNNO75496 209 aa11.21□□□□□ -0.62
CHD3-202ENST00000358181 CEP126Q9P2H0 1117 aa11.21□□□□□ -0.62
CHD3-202ENST00000358181 MYCP01106 439 aaPredicted RBP11.2□□□□□ -0.62
CHD3-202ENST00000358181 IDEP14735 1019 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 PPP1R21Q6ZMI0 780 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 SMARCA5O60264 1052 aaPredicted RBP11.2□□□□□ -0.62
CHD3-202ENST00000358181 RFC4P35249 363 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 FANCIQ9NVI1 1328 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 ERBINQ96RT1 1412 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 GPTP24298 496 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 ISM2Q6H9L7 571 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 SEPT14Q6ZU15 432 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 JARID2Q92833 1246 aaPredicted RBP11.2□□□□□ -0.62
CHD3-202ENST00000358181 PRKG1Q13976 671 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 RAB11FIP4Q86YS3 637 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 AFG3L2Q9Y4W6 797 aa11.2□□□□□ -0.62
CHD3-202ENST00000358181 SMIM23A6NLE4 172 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 HARSP12081 509 aaKnown RBP11.19□□□□□ -0.62
CHD3-202ENST00000358181 GINS2Q9Y248 185 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 POLR3GO15318 223 aaPredicted RBP11.19□□□□□ -0.62
CHD3-202ENST00000358181 CALM1P0DP23 149 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 CALM2P0DP24 149 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 CALM3P0DP25 149 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 PDCP20941 246 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 RTEL1-TNFRSF6BF6WH68 1400 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 CUX1P39880 1505 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 FBLN1P23142 703 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 ST5P78524 1137 aa11.19□□□□□ -0.62
CHD3-202ENST00000358181 THEMISQ8N1K5 641 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms