RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ADCY9O60503 1353 aa24.06■■□□□ 1.44
CLN3-202ENST00000355477 EIF2S2P20042 333 aaKnown RBP24.06■■□□□ 1.44
CLN3-202ENST00000355477 TTLL7Q6ZT98 887 aa24.06■■□□□ 1.44
CLN3-202ENST00000355477 BRIP1Q9BX63 1249 aa24.06■■□□□ 1.44
CLN3-202ENST00000355477 ATP10DQ9P241 1426 aa24.06■■□□□ 1.44
CLN3-202ENST00000355477 SBF1O95248 1867 aa24.06■■□□□ 1.44
CLN3-202ENST00000355477 H0YIN7 160 aa24.05■■□□□ 1.44
CLN3-202ENST00000355477 RGL2O15211 777 aa24.05■■□□□ 1.44
CLN3-202ENST00000355477 PDIA6Q15084 440 aa24.05■■□□□ 1.44
CLN3-202ENST00000355477 KRT24Q2M2I5 525 aa24.05■■□□□ 1.44
CLN3-202ENST00000355477 CNBD1Q8NA66 436 aa24.05■■□□□ 1.44
CLN3-202ENST00000355477 NIP7Q9Y221 180 aaKnown RBP eCLIP24.04■■□□□ 1.44
CLN3-202ENST00000355477 CACNA1SQ13698 1873 aa24.04■■□□□ 1.44
CLN3-202ENST00000355477 PDE6BP35913 854 aa24.03■■□□□ 1.44
CLN3-202ENST00000355477 LRP10Q7Z4F1 713 aa24.03■■□□□ 1.44
CLN3-202ENST00000355477 ERBB4Q15303 1308 aa24.03■■□□□ 1.44
CLN3-202ENST00000355477 MAP3K15Q6ZN16 1313 aa24.03■■□□□ 1.44
CLN3-202ENST00000355477 ERVV-1B6SEH8 477 aa24.02■■□□□ 1.44
CLN3-202ENST00000355477 ANP32CO43423 234 aa24.02■■□□□ 1.44
CLN3-202ENST00000355477 PROSER3Q2NL68 480 aa24.02■■□□□ 1.44
CLN3-202ENST00000355477 NBPF5PQ86XG9 351 aaPredicted RBP24.02■■□□□ 1.44
CLN3-202ENST00000355477 TTLL6Q8N841 843 aa24.02■■□□□ 1.44
CLN3-202ENST00000355477 NECTIN2Q92692 538 aa24.02■■□□□ 1.44
CLN3-202ENST00000355477 CCDC88AQ3V6T2 1871 aa24.01■■□□□ 1.43
CLN3-202ENST00000355477 NPHP1O15259 732 aa24.01■■□□□ 1.43
CLN3-202ENST00000355477 ANXA1P04083 346 aa24.01■■□□□ 1.43
CLN3-202ENST00000355477 CFAP44Q96MT7 982 aa24.01■■□□□ 1.43
CLN3-202ENST00000355477 FAM177BA6PVY3 158 aa24■■□□□ 1.43
CLN3-202ENST00000355477 ST5P78524 1137 aa24■■□□□ 1.43
CLN3-202ENST00000355477 KIF6Q6ZMV9 814 aa24■■□□□ 1.43
CLN3-202ENST00000355477 ZNF622Q969S3 477 aaKnown RBP eCLIP24■■□□□ 1.43
CLN3-202ENST00000355477 ZBTB3Q9H5J0 574 aa24■■□□□ 1.43
CLN3-202ENST00000355477 ZNF853P0CG23 659 aa23.99■■□□□ 1.43
CLN3-202ENST00000355477 PDZRN3Q9UPQ7 1066 aa23.99■■□□□ 1.43
CLN3-202ENST00000355477 SLX4Q8IY92 1834 aa23.98■■□□□ 1.43
CLN3-202ENST00000355477 SENP3-EIF4A1A0A087X0R7 540 aa23.98■■□□□ 1.43
CLN3-202ENST00000355477 TPTE2Q6XPS3 522 aa23.98■■□□□ 1.43
CLN3-202ENST00000355477 ZNF526Q8TF50 670 aaPredicted RBP23.98■■□□□ 1.43
CLN3-202ENST00000355477 MRS2Q9HD23 443 aa23.98■■□□□ 1.43
CLN3-202ENST00000355477 MBIPQ9NS73 344 aa23.98■■□□□ 1.43
CLN3-202ENST00000355477 SRGNP10124 158 aa23.96■■□□□ 1.43
CLN3-202ENST00000355477 C9orf131Q5VYM1 1079 aa23.96■■□□□ 1.43
CLN3-202ENST00000355477 ARFGEF2Q9Y6D5 1785 aa23.96■■□□□ 1.43
CLN3-202ENST00000355477 GPTP24298 496 aa23.95■■□□□ 1.42
CLN3-202ENST00000355477 UBN2Q6ZU65 1347 aa23.94■■□□□ 1.42
CLN3-202ENST00000355477 GIGYF2Q6Y7W6 1299 aaKnown RBP23.94■■□□□ 1.42
CLN3-202ENST00000355477 ZNF34Q8IZ26 560 aa23.94■■□□□ 1.42
CLN3-202ENST00000355477 GPBP1L1Q9HC44 474 aaPredicted RBP23.94■■□□□ 1.42
CLN3-202ENST00000355477 IFT57Q9NWB7 429 aa23.94■■□□□ 1.42
CLN3-202ENST00000355477 FER1L6Q2WGJ9 1857 aa23.94■■□□□ 1.42
CLN3-202ENST00000355477 RASSF7Q02833 373 aa23.93■■□□□ 1.42
CLN3-202ENST00000355477 STYK1Q6J9G0 422 aa23.93■■□□□ 1.42
CLN3-202ENST00000355477 COPS6Q7L5N1 327 aa23.93■■□□□ 1.42
CLN3-202ENST00000355477 DDX21Q9NR30 783 aaKnown RBP eCLIP23.93■■□□□ 1.42
CLN3-202ENST00000355477 CHPF2Q9P2E5 772 aa23.93■■□□□ 1.42
CLN3-202ENST00000355477 ZNF219Q9P2Y4 722 aaPredicted RBP23.93■■□□□ 1.42
CLN3-202ENST00000355477 ANKRD36CQ5JPF3 1778 aa23.93■■□□□ 1.42
CLN3-202ENST00000355477 TNRC6CQ9HCJ0 1690 aaKnown RBP23.92■■□□□ 1.42
CLN3-202ENST00000355477 KLRG2A4D1S0 409 aaPredicted RBP23.92■■□□□ 1.42
CLN3-202ENST00000355477 PRELPP51888 382 aa23.92■■□□□ 1.42
CLN3-202ENST00000355477 GNAI1P63096 354 aa23.92■■□□□ 1.42
CLN3-202ENST00000355477 AIMP1Q12904 312 aaKnown RBP23.92■■□□□ 1.42
CLN3-202ENST00000355477 SUSD4Q5VX71 490 aa23.92■■□□□ 1.42
CLN3-202ENST00000355477 DUSP27Q5VZP5 1158 aa23.92■■□□□ 1.42
CLN3-202ENST00000355477 NUTM1Q86Y26 1132 aa23.92■■□□□ 1.42
CLN3-202ENST00000355477 XAGE3Q8WTP9 111 aa23.92■■□□□ 1.42
CLN3-202ENST00000355477 MASTLQ96GX5 879 aa23.92■■□□□ 1.42
CLN3-202ENST00000355477 RNF181Q9P0P0 153 aa23.92■■□□□ 1.42
CLN3-202ENST00000355477 C21orf2O43822 256 aa23.91■■□□□ 1.42
CLN3-202ENST00000355477 HOXB7P09629 217 aa23.91■■□□□ 1.42
CLN3-202ENST00000355477 GTF2E1P29083 439 aaPredicted RBP23.91■■□□□ 1.42
CLN3-202ENST00000355477 C1QTNF8P60827 252 aa23.91■■□□□ 1.42
CLN3-202ENST00000355477 CALD1Q05682 793 aaKnown RBP23.91■■□□□ 1.42
CLN3-202ENST00000355477 HDGFL1Q5TGJ6 251 aa23.91■■□□□ 1.42
CLN3-202ENST00000355477 CNKSR1Q969H4 720 aa23.91■■□□□ 1.42
CLN3-202ENST00000355477 ERFEQ4G0M1 354 aa23.9■■□□□ 1.42
CLN3-202ENST00000355477 NYXQ9GZU5 481 aa23.9■■□□□ 1.42
CLN3-202ENST00000355477 ABCC12Q96J65 1359 aa23.9■■□□□ 1.42
CLN3-202ENST00000355477 NFKBIEO00221 500 aa23.89■■□□□ 1.41
CLN3-202ENST00000355477 PRPF40BQ6NWY9 871 aaKnown RBP23.89■■□□□ 1.41
CLN3-202ENST00000355477 ELL2O00472 640 aaPredicted RBP23.88■■□□□ 1.41
CLN3-202ENST00000355477 NPR1P16066 1061 aa23.88■■□□□ 1.41
CLN3-202ENST00000355477 DICER1Q9UPY3 1922 aaKnown RBP23.87■■□□□ 1.41
CLN3-202ENST00000355477 NTSR2O95665 410 aa23.87■■□□□ 1.41
CLN3-202ENST00000355477 CCDC27Q2M243 656 aa23.87■■□□□ 1.41
CLN3-202ENST00000355477 WWC1Q8IX03 1113 aa23.87■■□□□ 1.41
CLN3-202ENST00000355477 C8orf58Q8NAV2 365 aa23.87■■□□□ 1.41
CLN3-202ENST00000355477 IBTKQ9P2D0 1353 aaPredicted RBP23.87■■□□□ 1.41
CLN3-202ENST00000355477 LMNB1P20700 586 aa23.86■■□□□ 1.41
CLN3-202ENST00000355477 DBF4Q9UBU7 674 aaPredicted RBP23.86■■□□□ 1.41
CLN3-202ENST00000355477 PARP10Q53GL7 1025 aa23.85■■□□□ 1.41
CLN3-202ENST00000355477 C7orf43Q8WVR3 580 aa23.85■■□□□ 1.41
CLN3-202ENST00000355477 KIF3CO14782 793 aa23.84■■□□□ 1.41
CLN3-202ENST00000355477 CRY2Q49AN0 593 aa23.84■■□□□ 1.41
CLN3-202ENST00000355477 PPP1R42Q7Z4L9 355 aa23.84■■□□□ 1.41
CLN3-202ENST00000355477 TIAM2Q8IVF5 1701 aa23.84■■□□□ 1.41
CLN3-202ENST00000355477 TSR2Q969E8 191 aaKnown RBP23.83■■□□□ 1.41
CLN3-202ENST00000355477 HYPKQ9NX55 129 aa23.83■■□□□ 1.41
CLN3-202ENST00000355477 TCIRG1Q13488 830 aa23.82■■□□□ 1.4
CLN3-202ENST00000355477 NLRP10Q86W26 655 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms