RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 C17orf53Q8N3J3 647 aaPredicted RBP9.71□□□□□ -0.86
ATG4A-201ENST00000343524 ZGPATQ8N5A5 531 aaKnown RBP9.71□□□□□ -0.86
ATG4A-201ENST00000343524 ERO1AQ96HE7 468 aa9.71□□□□□ -0.86
ATG4A-201ENST00000343524 NSFL1CQ9UNZ2 370 aaKnown RBP9.71□□□□□ -0.86
ATG4A-201ENST00000343524 ERICH4A6NGS2 130 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 MCCP23508 829 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 GPS2Q13227 327 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 CUL4AQ13619 759 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 CADPS2Q86UW7 1296 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 SSH1Q8WYL5 1049 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 ZNF622Q969S3 477 aaKnown RBP eCLIP9.7□□□□□ -0.86
ATG4A-201ENST00000343524 KIF1BPQ96EK5 621 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 PYCARDQ9ULZ3 195 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 ATP6V1DQ9Y5K8 247 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 TRPM2O94759 1503 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 PTCH1Q13635 1447 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 RAD50Q92878 1312 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 CFAP65Q6ZU64 1925 aaKnown RBP9.7□□□□□ -0.86
ATG4A-201ENST00000343524 KIF24Q5T7B8 1368 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 TNNT1P13805 278 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 UBE2HP62256 183 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 RAD51AP2Q09MP3 1159 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 TTC22Q5TAA0 569 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 BRINP3Q76B58 766 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 MORC1Q86VD1 984 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 SECISBP2LQ93073 1101 aaKnown RBP9.7□□□□□ -0.86
ATG4A-201ENST00000343524 KCNF1Q9H3M0 494 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 USP21Q9UK80 565 aa9.7□□□□□ -0.86
ATG4A-201ENST00000343524 NOB1Q9ULX3 412 aaKnown RBP9.7□□□□□ -0.86
ATG4A-201ENST00000343524 RRP7AQ9Y3A4 280 aaKnown RBP9.7□□□□□ -0.86
ATG4A-201ENST00000343524 MROH1Q8NDA8 1641 aa9.69□□□□□ -0.86
ATG4A-201ENST00000343524 NEMFO60524 1076 aa9.69□□□□□ -0.86
ATG4A-201ENST00000343524 HCLS1P14317 486 aaPredicted RBP9.69□□□□□ -0.86
ATG4A-201ENST00000343524 NOM1Q5C9Z4 860 aaKnown RBP9.69□□□□□ -0.86
ATG4A-201ENST00000343524 ARHGAP45Q92619 1136 aa9.69□□□□□ -0.86
ATG4A-201ENST00000343524 LRRC59Q96AG4 307 aaKnown RBP9.69□□□□□ -0.86
ATG4A-201ENST00000343524 CHMP4AQ9BY43 222 aa9.69□□□□□ -0.86
ATG4A-201ENST00000343524 EP400Q96L91 3159 aa9.69□□□□□ -0.86
ATG4A-201ENST00000343524 PNPLA6Q8IY17 1366 aa9.69□□□□□ -0.86
ATG4A-201ENST00000343524 EXOSC9Q06265 439 aaKnown RBP9.68□□□□□ -0.86
ATG4A-201ENST00000343524 IFT57Q9NWB7 429 aa9.68□□□□□ -0.86
ATG4A-201ENST00000343524 V9GYY5 206 aaPredicted RBP9.68□□□□□ -0.86
ATG4A-201ENST00000343524 CCDC192P0DO97 292 aa9.68□□□□□ -0.86
ATG4A-201ENST00000343524 ANAPC15P60006 121 aa9.68□□□□□ -0.86
ATG4A-201ENST00000343524 FNBP4Q8N3X1 1017 aaPredicted RBP9.68□□□□□ -0.86
ATG4A-201ENST00000343524 MYCBPQ99417 103 aaPredicted RBP9.68□□□□□ -0.86
ATG4A-201ENST00000343524 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.67□□□□□ -0.86
ATG4A-201ENST00000343524 SSH2Q76I76 1423 aa9.67□□□□□ -0.86
ATG4A-201ENST00000343524 NSD3Q9BZ95 1437 aa9.67□□□□□ -0.86
ATG4A-201ENST00000343524 ATF3P18847 181 aa9.67□□□□□ -0.86
ATG4A-201ENST00000343524 GTF2A1P52655 376 aaPredicted RBP9.67□□□□□ -0.86
ATG4A-201ENST00000343524 C1QTNF8P60827 252 aa9.67□□□□□ -0.86
ATG4A-201ENST00000343524 SF3B2Q13435 895 aaKnown RBP9.67□□□□□ -0.86
ATG4A-201ENST00000343524 CEP135Q66GS9 1140 aa9.67□□□□□ -0.86
ATG4A-201ENST00000343524 AEBP1Q8IUX7 1158 aa9.67□□□□□ -0.86
ATG4A-201ENST00000343524 TMX3Q96JJ7 454 aa9.67□□□□□ -0.86
ATG4A-201ENST00000343524 C16orf45Q96MC5 204 aaPredicted RBP9.67□□□□□ -0.86
ATG4A-201ENST00000343524 ARGLU1Q9NWB6 273 aaPredicted RBP9.67□□□□□ -0.86
ATG4A-201ENST00000343524 BOLA1Q9Y3E2 137 aa9.67□□□□□ -0.86
ATG4A-201ENST00000343524 ERC2O15083 957 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 TUBB4AP04350 444 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 GSPT1P15170 499 aaKnown RBP9.66□□□□□ -0.86
ATG4A-201ENST00000343524 HNRNPH2P55795 449 aaKnown RBP9.66□□□□□ -0.86
ATG4A-201ENST00000343524 KMT5BQ4FZB7 885 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 USP48Q86UV5 1035 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 C19orf44Q9H6X5 657 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.66□□□□□ -0.86
ATG4A-201ENST00000343524 BCCIPQ9P287 314 aaKnown RBP eCLIP9.66□□□□□ -0.86
ATG4A-201ENST00000343524 ELP1O95163 1332 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 RPAP1Q9BWH6 1393 aaPredicted RBP9.66□□□□□ -0.86
ATG4A-201ENST00000343524 CHD2O14647 1828 aaKnown RBP9.66□□□□□ -0.86
ATG4A-201ENST00000343524 ATP8B1O43520 1251 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 ADAMTS2O95450 1211 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 CASQ1P31415 396 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 TPD52L1Q16890 204 aaPredicted RBP9.66□□□□□ -0.86
ATG4A-201ENST00000343524 ICE2Q659A1 982 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 FAM200AQ8TCP9 573 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 FUCA2Q9BTY2 467 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 RSPH14Q9UHP6 348 aa9.66□□□□□ -0.86
ATG4A-201ENST00000343524 PIK3C2BO00750 1634 aa9.65□□□□□ -0.86
ATG4A-201ENST00000343524 EPB41L2O43491 1005 aaKnown RBP9.65□□□□□ -0.86
ATG4A-201ENST00000343524 SLU7O95391 586 aaKnown RBP9.65□□□□□ -0.86
ATG4A-201ENST00000343524 APPP05067 770 aa9.65□□□□□ -0.86
ATG4A-201ENST00000343524 PLEKHM2Q8IWE5 1019 aa9.65□□□□□ -0.86
ATG4A-201ENST00000343524 NCAPGQ9BPX3 1015 aa9.65□□□□□ -0.86
ATG4A-201ENST00000343524 HDAC5Q9UQL6 1122 aa9.65□□□□□ -0.86
ATG4A-201ENST00000343524 RTL1A6NKG5 1358 aa9.65□□□□□ -0.86
ATG4A-201ENST00000343524 ZBTB7BO15156 539 aaPredicted RBP9.64□□□□□ -0.87
ATG4A-201ENST00000343524 CAVIN2O95810 425 aa9.64□□□□□ -0.87
ATG4A-201ENST00000343524 CDC25BP30305 580 aa9.64□□□□□ -0.87
ATG4A-201ENST00000343524 ZNF784Q8NCA9 323 aaPredicted RBP9.64□□□□□ -0.87
ATG4A-201ENST00000343524 PTGS1P23219 599 aa9.64□□□□□ -0.87
ATG4A-201ENST00000343524 NOP2P46087 812 aaKnown RBP9.64□□□□□ -0.87
ATG4A-201ENST00000343524 DHX8Q14562 1220 aaKnown RBP9.64□□□□□ -0.87
ATG4A-201ENST00000343524 FBXO38Q6PIJ6 1188 aa9.64□□□□□ -0.87
ATG4A-201ENST00000343524 C14orf37Q86TY3 774 aa9.64□□□□□ -0.87
ATG4A-201ENST00000343524 EFCAB3Q8N7B9 438 aa9.64□□□□□ -0.87
ATG4A-201ENST00000343524 TSR2Q969E8 191 aaKnown RBP9.64□□□□□ -0.87
ATG4A-201ENST00000343524 AK7Q96M32 723 aa9.64□□□□□ -0.87
ATG4A-201ENST00000343524 POTEB3A0JP26 581 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms