RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 BTBD11A6QL63 1104 aa11.53□□□□□ -0.56
CAPN3-201ENST00000318023 ELL2O00472 640 aaPredicted RBP11.53□□□□□ -0.56
CAPN3-201ENST00000318023 ZNF500O60304 480 aaPredicted RBP11.53□□□□□ -0.56
CAPN3-201ENST00000318023 MFAP1P55081 439 aaKnown RBP11.53□□□□□ -0.56
CAPN3-201ENST00000318023 CERS3Q8IU89 383 aa11.53□□□□□ -0.56
CAPN3-201ENST00000318023 PARP4Q9UKK3 1724 aaKnown RBP11.53□□□□□ -0.56
CAPN3-201ENST00000318023 KDRP35968 1356 aa11.52□□□□□ -0.56
CAPN3-201ENST00000318023 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.52□□□□□ -0.57
CAPN3-201ENST00000318023 ZNF710Q8N1W2 664 aa11.52□□□□□ -0.57
CAPN3-201ENST00000318023 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.52□□□□□ -0.57
CAPN3-201ENST00000318023 USP54Q70EL1 1684 aa11.52□□□□□ -0.57
CAPN3-201ENST00000318023 NKX1-1Q15270 411 aaPredicted RBP11.52□□□□□ -0.57
CAPN3-201ENST00000318023 ZNF496Q96IT1 587 aaPredicted RBP11.52□□□□□ -0.57
CAPN3-201ENST00000318023 BCAR3O75815 825 aa11.51□□□□□ -0.57
CAPN3-201ENST00000318023 DUSP27Q5VZP5 1158 aa11.51□□□□□ -0.57
CAPN3-201ENST00000318023 ABCC6O95255 1503 aa11.51□□□□□ -0.57
CAPN3-201ENST00000318023 KRT24Q2M2I5 525 aa11.51□□□□□ -0.57
CAPN3-201ENST00000318023 MAP3K5Q99683 1374 aa11.51□□□□□ -0.57
CAPN3-201ENST00000318023 ERVV-2B6SEH9 535 aa11.51□□□□□ -0.57
CAPN3-201ENST00000318023 BICDL1Q6ZP65 573 aa11.51□□□□□ -0.57
CAPN3-201ENST00000318023 COL23A1Q86Y22 540 aaPredicted RBP11.51□□□□□ -0.57
CAPN3-201ENST00000318023 HSCBQ8IWL3 235 aa11.51□□□□□ -0.57
CAPN3-201ENST00000318023 SMARCC1Q92922 1105 aaPredicted RBP11.51□□□□□ -0.57
CAPN3-201ENST00000318023 BCL9O00512 1426 aa11.5□□□□□ -0.57
CAPN3-201ENST00000318023 COL3A1P02461 1466 aaPredicted RBP11.5□□□□□ -0.57
CAPN3-201ENST00000318023 ANKRD26Q9UPS8 1709 aa11.5□□□□□ -0.57
CAPN3-201ENST00000318023 EIF2S2P20042 333 aaKnown RBP11.5□□□□□ -0.57
CAPN3-201ENST00000318023 A1BGP04217 495 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 CCDC24Q8N4L8 307 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 GBP4Q96PP9 640 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 C22orf23Q9BZE7 217 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 SRP68Q9UHB9 627 aaKnown RBP11.49□□□□□ -0.57
CAPN3-201ENST00000318023 ANXA1P04083 346 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 ZKSCAN5Q9Y2L8 839 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 TMPOP42166 694 aaKnown RBP11.49□□□□□ -0.57
CAPN3-201ENST00000318023 NFE2L2Q16236 605 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 CSPP1Q1MSJ5 1256 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 ZNF771Q7L3S4 317 aaPredicted RBP11.49□□□□□ -0.57
CAPN3-201ENST00000318023 PLEKHF1Q96S99 279 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 SPON1Q9HCB6 807 aa11.49□□□□□ -0.57
CAPN3-201ENST00000318023 IRX5P78411 483 aaPredicted RBP11.48□□□□□ -0.57
CAPN3-201ENST00000318023 ZNF790Q6PG37 636 aa11.48□□□□□ -0.57
CAPN3-201ENST00000318023 DOT1LQ8TEK3 1739 aa11.48□□□□□ -0.57
CAPN3-201ENST00000318023 CRKLP46109 303 aaKnown RBP11.48□□□□□ -0.57
CAPN3-201ENST00000318023 SLC27A3Q5K4L6 730 aa11.48□□□□□ -0.57
CAPN3-201ENST00000318023 SECISBP2LQ93073 1101 aaKnown RBP11.48□□□□□ -0.57
CAPN3-201ENST00000318023 TBC1D2BQ9UPU7 963 aa11.48□□□□□ -0.57
CAPN3-201ENST00000318023 COG6Q9Y2V7 657 aa11.48□□□□□ -0.57
CAPN3-201ENST00000318023 USP16Q9Y5T5 823 aa11.48□□□□□ -0.57
CAPN3-201ENST00000318023 DDX49Q9Y6V7 483 aaKnown RBP11.48□□□□□ -0.57
CAPN3-201ENST00000318023 PNPLA7Q6ZV29 1317 aa11.48□□□□□ -0.57
CAPN3-201ENST00000318023 TSPYL4Q9UJ04 414 aa11.47□□□□□ -0.57
CAPN3-201ENST00000318023 ZBTB1Q9Y2K1 713 aa11.47□□□□□ -0.57
CAPN3-201ENST00000318023 KCNJ4P48050 445 aa11.47□□□□□ -0.57
CAPN3-201ENST00000318023 MPNDQ8N594 471 aa11.47□□□□□ -0.57
CAPN3-201ENST00000318023 MYL6BP14649 208 aa11.47□□□□□ -0.57
CAPN3-201ENST00000318023 SKOR2Q2VWA4 1001 aaPredicted RBP11.47□□□□□ -0.57
CAPN3-201ENST00000318023 PANK1Q8TE04 598 aa11.47□□□□□ -0.57
CAPN3-201ENST00000318023 RUNDC1Q96C34 613 aa11.47□□□□□ -0.57
CAPN3-201ENST00000318023 RTCBQ9Y3I0 505 aaKnown RBP11.47□□□□□ -0.57
CAPN3-201ENST00000318023 DHX37Q8IY37 1157 aaKnown RBP11.46□□□□□ -0.57
CAPN3-201ENST00000318023 AKT1S1Q96B36 256 aa11.46□□□□□ -0.57
CAPN3-201ENST00000318023 RFC4P35249 363 aa11.46□□□□□ -0.58
CAPN3-201ENST00000318023 ZBTB9Q96C00 473 aa11.46□□□□□ -0.58
CAPN3-201ENST00000318023 RBSNQ9H1K0 784 aa11.46□□□□□ -0.58
CAPN3-201ENST00000318023 BTAF1O14981 1849 aa11.45□□□□□ -0.58
CAPN3-201ENST00000318023 NCAPD2Q15021 1401 aa11.45□□□□□ -0.58
CAPN3-201ENST00000318023 MYRIPQ8NFW9 859 aa11.45□□□□□ -0.58
CAPN3-201ENST00000318023 TRAPPC3LQ5T215 181 aa11.45□□□□□ -0.58
CAPN3-201ENST00000318023 CLUAP1Q96AJ1 413 aa11.45□□□□□ -0.58
CAPN3-201ENST00000318023 TNS1Q9HBL0 1735 aaKnown RBP11.45□□□□□ -0.58
CAPN3-201ENST00000318023 U2AF2P26368 475 aaKnown RBP eCLIP11.44□□□□□ -0.58
CAPN3-201ENST00000318023 TAF7Q15545 349 aaPredicted RBP11.44□□□□□ -0.58
CAPN3-201ENST00000318023 HS1BP3Q53T59 392 aa11.44□□□□□ -0.58
CAPN3-201ENST00000318023 CAVIN1Q6NZI2 390 aaKnown RBP11.44□□□□□ -0.58
CAPN3-201ENST00000318023 ARHGEF1Q92888 912 aaKnown RBP11.44□□□□□ -0.58
CAPN3-201ENST00000318023 TSR2Q969E8 191 aaKnown RBP11.44□□□□□ -0.58
CAPN3-201ENST00000318023 RGPD1P0DJD0 1748 aa11.44□□□□□ -0.58
CAPN3-201ENST00000318023 NPHP1O15259 732 aa11.44□□□□□ -0.58
CAPN3-201ENST00000318023 SSFA2P28290 1259 aa11.44□□□□□ -0.58
CAPN3-201ENST00000318023 GOLGA2Q08379 1002 aa11.44□□□□□ -0.58
CAPN3-201ENST00000318023 AIMP1Q12904 312 aaKnown RBP11.44□□□□□ -0.58
CAPN3-201ENST00000318023 FHDC1Q9C0D6 1143 aaPredicted RBP11.44□□□□□ -0.58
CAPN3-201ENST00000318023 PDZRN3Q9UPQ7 1066 aa11.44□□□□□ -0.58
CAPN3-201ENST00000318023 SBF2Q86WG5 1849 aa11.44□□□□□ -0.58
CAPN3-201ENST00000318023 DDIT3P35638 169 aa11.43□□□□□ -0.58
CAPN3-201ENST00000318023 RAB3GAP1Q15042 981 aa11.43□□□□□ -0.58
CAPN3-201ENST00000318023 TAF3Q5VWG9 929 aa11.43□□□□□ -0.58
CAPN3-201ENST00000318023 FMNL2Q96PY5 1086 aa11.43□□□□□ -0.58
CAPN3-201ENST00000318023 WNK3Q9BYP7 1800 aa11.43□□□□□ -0.58
CAPN3-201ENST00000318023 IRX3P78415 501 aaPredicted RBP11.43□□□□□ -0.58
CAPN3-201ENST00000318023 SPINK5Q9NQ38 1064 aaPredicted RBP11.43□□□□□ -0.58
CAPN3-201ENST00000318023 USPL1Q5W0Q7 1092 aa11.42□□□□□ -0.58
CAPN3-201ENST00000318023 PDLIM2Q96JY6 352 aa11.42□□□□□ -0.58
CAPN3-201ENST00000318023 SHANK3Q9BYB0 1731 aa11.42□□□□□ -0.58
CAPN3-201ENST00000318023 TRIM35Q9UPQ4 493 aa11.42□□□□□ -0.58
CAPN3-201ENST00000318023 STARD3NLO95772 234 aa11.42□□□□□ -0.58
CAPN3-201ENST00000318023 MMP10P09238 476 aa11.42□□□□□ -0.58
CAPN3-201ENST00000318023 POLD1P28340 1107 aa11.42□□□□□ -0.58
CAPN3-201ENST00000318023 MTFR1LQ9H019 292 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms