RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 KIF6Q6ZMV9 814 aa19.54■□□□□ 0.72
PDLIM5-202ENST00000318007 RTCBQ9Y3I0 505 aaKnown RBP19.54■□□□□ 0.72
PDLIM5-202ENST00000318007 ZNF831Q5JPB2 1677 aa19.54■□□□□ 0.72
PDLIM5-202ENST00000318007 CICQ96RK0 1608 aaPredicted RBP19.54■□□□□ 0.72
PDLIM5-202ENST00000318007 ATP5J2-PTCD1G3V325 749 aa19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 CWF19L2Q2TBE0 894 aaKnown RBP19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 DNAAF4Q8WXU2 420 aa19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 CACNA1FO60840 1977 aa19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 EIF5P55010 431 aaKnown RBP19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 HLFQ16534 295 aa19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 KSR2Q6VAB6 950 aa19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 ARHGAP45Q92619 1136 aa19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 MYD88Q99836 296 aa19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 TFCP2L1Q9NZI6 479 aa19.53■□□□□ 0.72
PDLIM5-202ENST00000318007 ABCC4O15439 1325 aa19.52■□□□□ 0.72
PDLIM5-202ENST00000318007 ANO8Q9HCE9 1232 aaPredicted RBP19.52■□□□□ 0.72
PDLIM5-202ENST00000318007 MSH5O43196 834 aa19.52■□□□□ 0.71
PDLIM5-202ENST00000318007 UPF1Q92900 1129 aaKnown RBP eCLIP19.52■□□□□ 0.71
PDLIM5-202ENST00000318007 SRP68Q9UHB9 627 aaKnown RBP19.52■□□□□ 0.71
PDLIM5-202ENST00000318007 SRCAPQ6ZRS2 3230 aa19.51■□□□□ 0.71
PDLIM5-202ENST00000318007 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.51■□□□□ 0.71
PDLIM5-202ENST00000318007 PDE3AQ14432 1141 aa19.51■□□□□ 0.71
PDLIM5-202ENST00000318007 ARFGEF2Q9Y6D5 1785 aa19.5■□□□□ 0.71
PDLIM5-202ENST00000318007 GPTP24298 496 aa19.5■□□□□ 0.71
PDLIM5-202ENST00000318007 RTL5Q5HYW3 569 aaPredicted RBP19.5■□□□□ 0.71
PDLIM5-202ENST00000318007 PLBD2Q8NHP8 589 aa19.5■□□□□ 0.71
PDLIM5-202ENST00000318007 GOLGB1Q14789 3259 aaKnown RBP19.5■□□□□ 0.71
PDLIM5-202ENST00000318007 RPS6KA4O75676 772 aa19.5■□□□□ 0.71
PDLIM5-202ENST00000318007 MVPQ14764 893 aaKnown RBP19.5■□□□□ 0.71
PDLIM5-202ENST00000318007 ARHGEF1Q92888 912 aaKnown RBP19.5■□□□□ 0.71
PDLIM5-202ENST00000318007 RREB1Q92766 1687 aa19.49■□□□□ 0.71
PDLIM5-202ENST00000318007 FAM177BA6PVY3 158 aa19.49■□□□□ 0.71
PDLIM5-202ENST00000318007 RC3H1Q5TC82 1133 aaKnown RBP19.49■□□□□ 0.71
PDLIM5-202ENST00000318007 JARID2Q92833 1246 aaPredicted RBP19.49■□□□□ 0.71
PDLIM5-202ENST00000318007 MAP3K15Q6ZN16 1313 aa19.49■□□□□ 0.71
PDLIM5-202ENST00000318007 BICDL1Q6ZP65 573 aa19.48■□□□□ 0.71
PDLIM5-202ENST00000318007 C1orf115Q9H7X2 142 aa19.48■□□□□ 0.71
PDLIM5-202ENST00000318007 RFC4P35249 363 aa19.48■□□□□ 0.71
PDLIM5-202ENST00000318007 TRAPPC3LQ5T215 181 aa19.48■□□□□ 0.71
PDLIM5-202ENST00000318007 USPL1Q5W0Q7 1092 aa19.48■□□□□ 0.71
PDLIM5-202ENST00000318007 MS4A1P11836 297 aa19.47■□□□□ 0.71
PDLIM5-202ENST00000318007 NEXNQ0ZGT2 675 aa19.47■□□□□ 0.71
PDLIM5-202ENST00000318007 BEND3Q5T5X7 828 aa19.47■□□□□ 0.71
PDLIM5-202ENST00000318007 SRCIN1Q9C0H9 1055 aa19.47■□□□□ 0.71
PDLIM5-202ENST00000318007 RGPD3A6NKT7 1758 aaPredicted RBP19.47■□□□□ 0.71
PDLIM5-202ENST00000318007 RGPD4Q7Z3J3 1758 aa19.47■□□□□ 0.71
PDLIM5-202ENST00000318007 IGKV5-2P06315 115 aa19.46■□□□□ 0.71
PDLIM5-202ENST00000318007 METTL22Q9BUU2 404 aaPredicted RBP19.46■□□□□ 0.71
PDLIM5-202ENST00000318007 NUP188Q5SRE5 1749 aa19.46■□□□□ 0.71
PDLIM5-202ENST00000318007 UBR3Q6ZT12 1888 aa19.46■□□□□ 0.71
PDLIM5-202ENST00000318007 ZPR1O75312 459 aa19.46■□□□□ 0.71
PDLIM5-202ENST00000318007 CAMTA2O94983 1202 aa19.46■□□□□ 0.71
PDLIM5-202ENST00000318007 AKT1S1Q96B36 256 aa19.46■□□□□ 0.71
PDLIM5-202ENST00000318007 MEIS3Q99687 375 aa19.46■□□□□ 0.71
PDLIM5-202ENST00000318007 C4AP0C0L4 1744 aa19.45■□□□□ 0.7
PDLIM5-202ENST00000318007 CCT4P50991 539 aaKnown RBP19.44■□□□□ 0.7
PDLIM5-202ENST00000318007 INTS3Q68E01 1043 aaKnown RBP19.44■□□□□ 0.7
PDLIM5-202ENST00000318007 CCDC125Q86Z20 511 aa19.44■□□□□ 0.7
PDLIM5-202ENST00000318007 TUBGCP6Q96RT7 1819 aa19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 NEURL1BA8MQ27 555 aa19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 GIGYF2Q6Y7W6 1299 aaKnown RBP19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 PDGFDQ9GZP0 370 aaPredicted RBP19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 STK32BQ9NY57 414 aa19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 DDX19BQ9UMR2 479 aa19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 AFDNP55196 1824 aaKnown RBP19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 SLC15A2Q16348 729 aa19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 COL23A1Q86Y22 540 aaPredicted RBP19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 LINS1Q8NG48 757 aa19.43■□□□□ 0.7
PDLIM5-202ENST00000318007 A0A087WZG4 1122 aa19.42■□□□□ 0.7
PDLIM5-202ENST00000318007 NBPF7P0C2Y1 421 aaPredicted RBP19.42■□□□□ 0.7
PDLIM5-202ENST00000318007 SSFA2P28290 1259 aa19.42■□□□□ 0.7
PDLIM5-202ENST00000318007 MSL1Q68DK7 614 aa19.42■□□□□ 0.7
PDLIM5-202ENST00000318007 C9orf78Q9NZ63 289 aaPredicted RBP19.42■□□□□ 0.7
PDLIM5-202ENST00000318007 NUP98P52948 1817 aa19.42■□□□□ 0.7
PDLIM5-202ENST00000318007 PXDNLA1KZ92 1463 aa19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 UBN2Q6ZU65 1347 aa19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 PNPLA7Q6ZV29 1317 aa19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 USP42Q9H9J4 1324 aaKnown RBP19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 ZBTB7BO15156 539 aaPredicted RBP19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 TCIRG1Q13488 830 aa19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 BCL2L12Q9HB09 334 aa19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 NARFQ9UHQ1 456 aa19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 NIP7Q9Y221 180 aaKnown RBP eCLIP19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 TBC1D9BQ66K14 1250 aa19.41■□□□□ 0.7
PDLIM5-202ENST00000318007 USP44Q9H0E7 712 aa19.4■□□□□ 0.7
PDLIM5-202ENST00000318007 ATP10DQ9P241 1426 aa19.4■□□□□ 0.7
PDLIM5-202ENST00000318007 ERVV-1B6SEH8 477 aa19.39■□□□□ 0.7
PDLIM5-202ENST00000318007 GCKRQ14397 625 aa19.39■□□□□ 0.7
PDLIM5-202ENST00000318007 UBE3BQ7Z3V4 1068 aa19.39■□□□□ 0.7
PDLIM5-202ENST00000318007 SYNE4Q8N205 404 aa19.39■□□□□ 0.7
PDLIM5-202ENST00000318007 BCORQ6W2J9 1755 aa19.39■□□□□ 0.69
PDLIM5-202ENST00000318007 CCDC24Q8N4L8 307 aa19.39■□□□□ 0.69
PDLIM5-202ENST00000318007 CWC25Q9NXE8 425 aaPredicted RBP19.39■□□□□ 0.69
PDLIM5-202ENST00000318007 ZNF652Q9Y2D9 606 aa19.39■□□□□ 0.69
PDLIM5-202ENST00000318007 SCN7AQ01118 1682 aa19.39■□□□□ 0.69
PDLIM5-202ENST00000318007 B4GALNT3Q6L9W6 998 aa19.38■□□□□ 0.69
PDLIM5-202ENST00000318007 FAM89AQ96GI7 184 aa19.38■□□□□ 0.69
PDLIM5-202ENST00000318007 GRM8O00222 908 aa19.37■□□□□ 0.69
PDLIM5-202ENST00000318007 UBTFL1P0CB47 393 aaPredicted RBP19.37■□□□□ 0.69
PDLIM5-202ENST00000318007 GYS1P13807 737 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms