RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 LARGE1O95461 756 aa22.91■■□□□ 1.26
RTN4-201ENST00000317610 RUFY2Q8WXA3 655 aa22.91■■□□□ 1.26
RTN4-201ENST00000317610 ZSCAN31Q96LW9 406 aaPredicted RBP22.91■■□□□ 1.26
RTN4-201ENST00000317610 CHMP4AQ9BY43 222 aa22.91■■□□□ 1.26
RTN4-201ENST00000317610 MTMR6Q9Y217 621 aa22.91■■□□□ 1.26
RTN4-201ENST00000317610 KDM4AO75164 1064 aa22.9■■□□□ 1.26
RTN4-201ENST00000317610 CASTP20810 708 aaKnown RBP22.9■■□□□ 1.26
RTN4-201ENST00000317610 SH2B1Q9NRF2 756 aaPredicted RBP22.9■■□□□ 1.26
RTN4-201ENST00000317610 SPG7Q9UQ90 795 aa22.9■■□□□ 1.26
RTN4-201ENST00000317610 PRIMPOLQ96LW4 560 aa22.9■■□□□ 1.26
RTN4-201ENST00000317610 SPTLC3Q9NUV7 552 aa22.9■■□□□ 1.26
RTN4-201ENST00000317610 NOLC1Q14978 699 aaKnown RBP eCLIP22.89■■□□□ 1.258e-8■□□□□ 10
RTN4-201ENST00000317610 ZSWIM6Q9HCJ5 1215 aa22.89■■□□□ 1.25
RTN4-201ENST00000317610 FIBPO43427 364 aa22.88■■□□□ 1.25
RTN4-201ENST00000317610 DIAPH3Q9NSV4 1193 aa22.88■■□□□ 1.25
RTN4-201ENST00000317610 EID1Q9Y6B2 187 aa22.88■■□□□ 1.25
RTN4-201ENST00000317610 GJB2P29033 226 aa22.88■■□□□ 1.25
RTN4-201ENST00000317610 LARP6Q9BRS8 491 aaKnown RBP22.88■■□□□ 1.25
RTN4-201ENST00000317610 CHPF2Q9P2E5 772 aa22.88■■□□□ 1.25
RTN4-201ENST00000317610 PI4KAP2A4QPH2 592 aa22.87■■□□□ 1.25
RTN4-201ENST00000317610 PI4KAP1Q8N8J0 262 aa22.87■■□□□ 1.25
RTN4-201ENST00000317610 PDRG1Q9NUG6 133 aa22.87■■□□□ 1.25
RTN4-201ENST00000317610 ADCY9O60503 1353 aa22.87■■□□□ 1.25
RTN4-201ENST00000317610 CPA1P15085 419 aa22.87■■□□□ 1.25
RTN4-201ENST00000317610 PTH1RQ03431 593 aa22.87■■□□□ 1.25
RTN4-201ENST00000317610 CCDC83Q8IWF9 413 aa22.87■■□□□ 1.25
RTN4-201ENST00000317610 ZNF830Q96NB3 372 aaPredicted RBP22.87■■□□□ 1.25
RTN4-201ENST00000317610 LTN1O94822 1766 aa22.87■■□□□ 1.25
RTN4-201ENST00000317610 EIF2S2P20042 333 aaKnown RBP22.86■■□□□ 1.25
RTN4-201ENST00000317610 GTF2F1P35269 517 aaKnown RBP eCLIP22.86■■□□□ 1.25
RTN4-201ENST00000317610 LMO7Q8WWI1 1683 aa22.86■■□□□ 1.25
RTN4-201ENST00000317610 HMGN5P82970 282 aaKnown RBP22.86■■□□□ 1.25
RTN4-201ENST00000317610 ST3GAL1Q11201 340 aa22.86■■□□□ 1.25
RTN4-201ENST00000317610 ECHDC1Q9NTX5 307 aa22.86■■□□□ 1.25
RTN4-201ENST00000317610 DNM1Q05193 864 aaKnown RBP22.85■■□□□ 1.25
RTN4-201ENST00000317610 ADCK5Q3MIX3 580 aa22.85■■□□□ 1.25
RTN4-201ENST00000317610 CLASRPQ8N2M8 674 aaKnown RBP22.85■■□□□ 1.25
RTN4-201ENST00000317610 JAKMIP1Q96N16 626 aaKnown RBP22.85■■□□□ 1.25
RTN4-201ENST00000317610 TTC12Q9H892 705 aaPredicted RBP22.85■■□□□ 1.25
RTN4-201ENST00000317610 CYP46A1Q9Y6A2 500 aa22.85■■□□□ 1.25
RTN4-201ENST00000317610 NECTIN1Q15223 517 aa22.85■■□□□ 1.25
RTN4-201ENST00000317610 LTV1Q96GA3 475 aaPredicted RBP22.85■■□□□ 1.25
RTN4-201ENST00000317610 KIF13AQ9H1H9 1805 aa22.84■■□□□ 1.25
RTN4-201ENST00000317610 GIMAP6Q6P9H5 292 aa22.84■■□□□ 1.25
RTN4-201ENST00000317610 PDIA4P13667 645 aaKnown RBP22.83■■□□□ 1.25
RTN4-201ENST00000317610 PRPF40BQ6NWY9 871 aaKnown RBP22.83■■□□□ 1.25
RTN4-201ENST00000317610 USHBP1Q8N6Y0 703 aa22.83■■□□□ 1.25
RTN4-201ENST00000317610 OS9Q13438 667 aaPredicted RBP22.82■■□□□ 1.24
RTN4-201ENST00000317610 DNTTIP2Q5QJE6 756 aaKnown RBP22.82■■□□□ 1.24
RTN4-201ENST00000317610 NUTM2GQ5VZR2 741 aa22.82■■□□□ 1.24
RTN4-201ENST00000317610 ERC1Q8IUD2 1116 aa22.82■■□□□ 1.24
RTN4-201ENST00000317610 EVI5LQ96CN4 794 aa22.82■■□□□ 1.24
RTN4-201ENST00000317610 GPATCH3Q96I76 525 aa22.82■■□□□ 1.24
RTN4-201ENST00000317610 CCDC171Q6TFL3 1326 aa22.82■■□□□ 1.24
RTN4-201ENST00000317610 MPNDQ8N594 471 aa22.82■■□□□ 1.24
RTN4-201ENST00000317610 SNRKQ9NRH2 765 aa22.82■■□□□ 1.24
RTN4-201ENST00000317610 ALDH1L1O75891 902 aa22.81■■□□□ 1.24
RTN4-201ENST00000317610 TPM3P06753 285 aa22.81■■□□□ 1.24
RTN4-201ENST00000317610 ME3Q16798 604 aa22.81■■□□□ 1.24
RTN4-201ENST00000317610 ABTB2Q8N961 1025 aa22.81■■□□□ 1.24
RTN4-201ENST00000317610 LGR6Q9HBX8 967 aa22.81■■□□□ 1.24
RTN4-201ENST00000317610 AP5Z1O43299 807 aa22.81■■□□□ 1.24
RTN4-201ENST00000317610 KCNQ3O43525 872 aa22.8■■□□□ 1.24
RTN4-201ENST00000317610 IP6K1Q92551 441 aa22.8■■□□□ 1.24
RTN4-201ENST00000317610 NFAT5O94916 1531 aa22.8■■□□□ 1.24
RTN4-201ENST00000317610 ELP1O95163 1332 aa22.79■■□□□ 1.24
RTN4-201ENST00000317610 IFIT2P09913 472 aaKnown RBP22.79■■□□□ 1.24
RTN4-201ENST00000317610 ZKSCAN1P17029 563 aaPredicted RBP22.79■■□□□ 1.24
RTN4-201ENST00000317610 CREB3L3Q68CJ9 461 aa22.79■■□□□ 1.24
RTN4-201ENST00000317610 MAP4K1Q92918 833 aa22.79■■□□□ 1.24
RTN4-201ENST00000317610 HDAC5Q9UQL6 1122 aa22.79■■□□□ 1.24
RTN4-201ENST00000317610 ADGRL3Q9HAR2 1447 aa22.78■■□□□ 1.24
RTN4-201ENST00000317610 CCDC192P0DO97 292 aa22.78■■□□□ 1.24
RTN4-201ENST00000317610 C17orf53Q8N3J3 647 aaPredicted RBP22.78■■□□□ 1.24
RTN4-201ENST00000317610 KIAA1524Q8TCG1 905 aa22.78■■□□□ 1.24
RTN4-201ENST00000317610 DBF4Q9UBU7 674 aaPredicted RBP22.78■■□□□ 1.24
RTN4-201ENST00000317610 RBM8AQ9Y5S9 174 aaKnown RBP22.78■■□□□ 1.24
RTN4-201ENST00000317610 HIP1O00291 1037 aa22.77■■□□□ 1.24
RTN4-201ENST00000317610 TPCN1Q9ULQ1 816 aa22.77■■□□□ 1.24
RTN4-201ENST00000317610 PHRF1Q9P1Y6 1649 aaKnown RBP22.77■■□□□ 1.24
RTN4-201ENST00000317610 TPRNQ4KMQ1 711 aa22.77■■□□□ 1.24
RTN4-201ENST00000317610 VPS37CA5D8V6 355 aaPredicted RBP22.76■■□□□ 1.23
RTN4-201ENST00000317610 ANXA1P04083 346 aa22.76■■□□□ 1.23
RTN4-201ENST00000317610 NBPF6Q5VWK0 638 aa22.76■■□□□ 1.23
RTN4-201ENST00000317610 NBPF4Q96M43 638 aa22.76■■□□□ 1.23
RTN4-201ENST00000317610 ALDH8A1Q9H2A2 487 aaPredicted RBP22.76■■□□□ 1.23
RTN4-201ENST00000317610 KCNF1Q9H3M0 494 aa22.76■■□□□ 1.23
RTN4-201ENST00000317610 KRT85P78386 507 aa22.76■■□□□ 1.23
RTN4-201ENST00000317610 AKAP4Q5JQC9 854 aa22.76■■□□□ 1.23
RTN4-201ENST00000317610 TTC6Q86TZ1 520 aa22.76■■□□□ 1.23
RTN4-201ENST00000317610 CCDC94Q9BW85 323 aaPredicted RBP22.76■■□□□ 1.23
RTN4-201ENST00000317610 BTBD11A6QL63 1104 aa22.75■■□□□ 1.23
RTN4-201ENST00000317610 PSMA5P28066 241 aa22.75■■□□□ 1.23
RTN4-201ENST00000317610 ZNF710Q8N1W2 664 aa22.75■■□□□ 1.23
RTN4-201ENST00000317610 NECAB1Q8N987 351 aa22.75■■□□□ 1.23
RTN4-201ENST00000317610 OVOS2A0A0G2JMS6 1433 aa22.75■■□□□ 1.23
RTN4-201ENST00000317610 PLPPR3Q6T4P5 718 aa22.75■■□□□ 1.23
RTN4-201ENST00000317610 KSR2Q6VAB6 950 aa22.75■■□□□ 1.23
RTN4-201ENST00000317610 SMAP1Q8IYB5 467 aaPredicted RBP22.75■■□□□ 1.23
RTN4-201ENST00000317610 C9orf78Q9NZ63 289 aaPredicted RBP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms