RNA–Protein interactions for RNA: ENST00000308177.4

PCDHGC3-201, Transcript of protocadherin gamma subfamily C, 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGC3, Length 4,725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-201ENST00000308177 ANKRD20A12PQ8NF67 263 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 TRPM1Q7Z4N2 1603 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 CCDC192P0DO97 292 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 IL2RBP14784 551 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 NBPF6Q5VWK0 638 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 NGLY1Q96IV0 654 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 NBPF4Q96M43 638 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 LGR6Q9HBX8 967 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 CFAP45Q9UL16 551 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 TRIM5Q9C035 493 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 DDX21Q9NR30 783 aaKnown RBP eCLIP13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 PA2G4Q9UQ80 394 aaKnown RBP13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 ARHGEF10O15013 1369 aa13.5□□□□□ -0.25
PCDHGC3-201ENST00000308177 HOXB7P09629 217 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 LMBR1LQ6UX01 489 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 AATKQ6ZMQ8 1374 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 FAM135BQ49AJ0 1406 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 BCORL1Q5H9F3 1711 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 CDKL5O76039 1030 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 LARP6Q9BRS8 491 aaKnown RBP13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 TNMDQ9H2S6 317 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 NUP133Q8WUM0 1156 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 HMGB1P09429 215 aaKnown RBP13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 ATP7BP35670 1465 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 OLFM4Q6UX06 510 aa13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.49□□□□□ -0.25
PCDHGC3-201ENST00000308177 TSPOAP1O95153 1857 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 MAP3K4Q9Y6R4 1608 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 TPM2P07951 284 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 SNX21Q969T3 373 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 UBAC1Q9BSL1 405 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 SNRKQ9NRH2 765 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 KAT6BQ8WYB5 2073 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 ROBO2Q9HCK4 1378 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 ZNF592Q92610 1267 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 ZPR1O75312 459 aa13.48□□□□□ -0.25
PCDHGC3-201ENST00000308177 KIAA0232Q92628 1395 aa13.47□□□□□ -0.25
PCDHGC3-201ENST00000308177 ANAPC15P60006 121 aa13.47□□□□□ -0.25
PCDHGC3-201ENST00000308177 MAP3K12Q12852 859 aa13.47□□□□□ -0.25
PCDHGC3-201ENST00000308177 SLC5A1P13866 664 aa13.47□□□□□ -0.25
PCDHGC3-201ENST00000308177 ZNF790Q6PG37 636 aa13.47□□□□□ -0.25
PCDHGC3-201ENST00000308177 TMX3Q96JJ7 454 aa13.47□□□□□ -0.25
PCDHGC3-201ENST00000308177 IL27Q8NEV9 243 aa13.47□□□□□ -0.25
PCDHGC3-201ENST00000308177 CLASP1Q7Z460 1538 aa13.46□□□□□ -0.25
PCDHGC3-201ENST00000308177 RNF17Q9BXT8 1623 aaKnown RBP13.46□□□□□ -0.25
PCDHGC3-201ENST00000308177 CAVIN4Q5BKX8 364 aa13.46□□□□□ -0.25
PCDHGC3-201ENST00000308177 DDX46Q7L014 1031 aaKnown RBP13.46□□□□□ -0.25
PCDHGC3-201ENST00000308177 SYCE3A1L190 88 aa13.46□□□□□ -0.25
PCDHGC3-201ENST00000308177 BAG4O95429 457 aaKnown RBP13.46□□□□□ -0.25
PCDHGC3-201ENST00000308177 NAPBQ9H115 298 aa13.46□□□□□ -0.25
PCDHGC3-201ENST00000308177 USP19O94966 1318 aa13.46□□□□□ -0.26
PCDHGC3-201ENST00000308177 TTC41PQ6P2S7 1318 aa13.46□□□□□ -0.26
PCDHGC3-201ENST00000308177 NUP62CLQ9H1M0 184 aa13.46□□□□□ -0.26
PCDHGC3-201ENST00000308177 PRR36Q9H6K5 1346 aa13.46□□□□□ -0.26
PCDHGC3-201ENST00000308177 ZNF213O14771 459 aa13.45□□□□□ -0.26
PCDHGC3-201ENST00000308177 OTUD7AQ8TE49 926 aaPredicted RBP13.45□□□□□ -0.26
PCDHGC3-201ENST00000308177 HMG20BQ9P0W2 317 aa13.45□□□□□ -0.26
PCDHGC3-201ENST00000308177 IL15P40933 162 aaPredicted RBP13.45□□□□□ -0.26
PCDHGC3-201ENST00000308177 SPHKAPQ2M3C7 1700 aa13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 HOMER1Q86YM7 354 aa13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 SCAND2PQ9GZW5 306 aaPredicted RBP13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 ABCC4O15439 1325 aa13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 IL17REQ8NFR9 667 aa13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 ABCA9Q8IUA7 1624 aa13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 NLRP1Q9C000 1473 aa13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 PCDH11XQ9BZA7 1347 aa13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 PCDH11YQ9BZA8 1340 aa13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 PCMTD1Q96MG8 357 aaPredicted RBP13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 NEK1Q96PY6 1258 aa13.44□□□□□ -0.26
PCDHGC3-201ENST00000308177 STX6O43752 255 aa13.43□□□□□ -0.26
PCDHGC3-201ENST00000308177 HMGN5P82970 282 aaKnown RBP13.43□□□□□ -0.26
PCDHGC3-201ENST00000308177 CTDP1Q9Y5B0 961 aaPredicted RBP13.43□□□□□ -0.26
PCDHGC3-201ENST00000308177 CHMLP26374 656 aa13.43□□□□□ -0.26
PCDHGC3-201ENST00000308177 EIF4A1P60842 406 aaKnown RBP13.43□□□□□ -0.26
PCDHGC3-201ENST00000308177 RBM8AQ9Y5S9 174 aaKnown RBP13.43□□□□□ -0.26
PCDHGC3-201ENST00000308177 MINDY4BA8MYZ0 360 aa13.43□□□□□ -0.26
PCDHGC3-201ENST00000308177 IPO7O95373 1038 aaKnown RBP13.43□□□□□ -0.26
PCDHGC3-201ENST00000308177 BICC1Q9H694 974 aaKnown RBP13.43□□□□□ -0.26
PCDHGC3-201ENST00000308177 GJB2P29033 226 aa13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 TTF1Q15361 905 aaPredicted RBP13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 CDC5LQ99459 802 aaKnown RBP13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 USP26Q9BXU7 913 aa13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 SAMD1Q6SPF0 538 aaPredicted RBP13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 WASF1Q92558 559 aa13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 DDX17Q92841 729 aaKnown RBP13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 GDPD2Q9HCC8 539 aa13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 USP6P35125 1406 aa13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 DDB1Q16531 1140 aa13.42□□□□□ -0.26
PCDHGC3-201ENST00000308177 TXLNAP40222 546 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 IKQ13123 557 aaPredicted RBP13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 MAP3K11Q16584 847 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 SLC52A2Q9HAB3 445 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 PNMA6EA0A0J9YXQ4 647 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 SMC2O95347 1197 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 CCT2P78371 535 aaKnown RBP13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 HSP90AA2PQ14568 343 aaPredicted RBP13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 ATP2B3Q16720 1220 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 CCAR2Q8N163 923 aaKnown RBP13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 SPC24Q8NBT2 197 aa13.41□□□□□ -0.26
PCDHGC3-201ENST00000308177 KIF24Q5T7B8 1368 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms