RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CCDC186Q7Z3E2 898 aa20.05■□□□□ 0.8
SYNPO-201ENST00000307662 SCAF11Q99590 1463 aaKnown RBP20.05■□□□□ 0.8
SYNPO-201ENST00000307662 F6X3S4 739 aa20.04■□□□□ 0.8
SYNPO-201ENST00000307662 PPP1R12BO60237 982 aaPredicted RBP20.04■□□□□ 0.8
SYNPO-201ENST00000307662 FGFR1OPO95684 399 aaKnown RBP20.04■□□□□ 0.8
SYNPO-201ENST00000307662 CCDC175P0C221 793 aa20.04■□□□□ 0.8
SYNPO-201ENST00000307662 LRP2BPQ9P2M1 347 aa20.04■□□□□ 0.8
SYNPO-201ENST00000307662 AKAP2Q9Y2D5 859 aa20.04■□□□□ 0.8
SYNPO-201ENST00000307662 ANKLE2Q86XL3 938 aa20.04■□□□□ 0.8
SYNPO-201ENST00000307662 DNAAF4Q8WXU2 420 aa20.04■□□□□ 0.8
SYNPO-201ENST00000307662 ARFGAP3Q9NP61 516 aa20.04■□□□□ 0.8
SYNPO-201ENST00000307662 CCT2P78371 535 aaKnown RBP20.03■□□□□ 0.8
SYNPO-201ENST00000307662 USP48Q86UV5 1035 aa20.03■□□□□ 0.8
SYNPO-201ENST00000307662 GOPCQ9HD26 462 aa20.03■□□□□ 0.8
SYNPO-201ENST00000307662 MNAT1P51948 309 aa20.03■□□□□ 0.8
SYNPO-201ENST00000307662 ZSCAN16Q9H4T2 348 aaPredicted RBP20.03■□□□□ 0.8
SYNPO-201ENST00000307662 GOLGA8BA8MQT2 603 aa20.03■□□□□ 0.8
SYNPO-201ENST00000307662 IFIT1P09914 478 aaKnown RBP20.03■□□□□ 0.8
SYNPO-201ENST00000307662 CETN2P41208 172 aa20.03■□□□□ 0.8
SYNPO-201ENST00000307662 ANO6Q4KMQ2 910 aa20.03■□□□□ 0.8
SYNPO-201ENST00000307662 WAPLQ7Z5K2 1190 aa20.03■□□□□ 0.8
SYNPO-201ENST00000307662 CCDC8Q9H0W5 538 aaPredicted RBP20.03■□□□□ 0.8
SYNPO-201ENST00000307662 ZSWIM4Q9H7M6 989 aa20.03■□□□□ 0.8
SYNPO-201ENST00000307662 CD109Q6YHK3 1445 aa20.02■□□□□ 0.8
SYNPO-201ENST00000307662 ADGRL1O94910 1474 aa20.02■□□□□ 0.8
SYNPO-201ENST00000307662 WWC2Q6AWC2 1192 aa20.02■□□□□ 0.8
SYNPO-201ENST00000307662 PRIM1P49642 420 aaKnown RBP20.02■□□□□ 0.8
SYNPO-201ENST00000307662 DNA2P51530 1060 aa20.02■□□□□ 0.8
SYNPO-201ENST00000307662 GTF2A1P52655 376 aaPredicted RBP20.02■□□□□ 0.8
SYNPO-201ENST00000307662 SPECC1Q5M775 1068 aa20.02■□□□□ 0.8
SYNPO-201ENST00000307662 CNPY2Q9Y2B0 182 aa20.02■□□□□ 0.8
SYNPO-201ENST00000307662 SSRP1Q08945 709 aaKnown RBP20.02■□□□□ 0.8
SYNPO-201ENST00000307662 HLTFQ14527 1009 aaKnown RBP eCLIP20.02■□□□□ 0.79
SYNPO-201ENST00000307662 LARP1Q6PKG0 1096 aaKnown RBP20.02■□□□□ 0.79
SYNPO-201ENST00000307662 TUBB4AP04350 444 aa20.01■□□□□ 0.79
SYNPO-201ENST00000307662 RAB3GAP1Q15042 981 aa20.01■□□□□ 0.79
SYNPO-201ENST00000307662 TDRD12Q587J7 1177 aaKnown RBP20.01■□□□□ 0.79
SYNPO-201ENST00000307662 ECHDC1Q9NTX5 307 aa20.01■□□□□ 0.79
SYNPO-201ENST00000307662 FAM135AQ9P2D6 1515 aa20.01■□□□□ 0.79
SYNPO-201ENST00000307662 SLU7O95391 586 aaKnown RBP20.01■□□□□ 0.79
SYNPO-201ENST00000307662 SSR1P43307 286 aaKnown RBP20.01■□□□□ 0.79
SYNPO-201ENST00000307662 SPINK5Q9NQ38 1064 aaPredicted RBP20.01■□□□□ 0.79
SYNPO-201ENST00000307662 SLC12A7Q9Y666 1083 aa20.01■□□□□ 0.79
SYNPO-201ENST00000307662 TTC12Q9H892 705 aaPredicted RBP20.01■□□□□ 0.79
SYNPO-201ENST00000307662 STRN4Q9NRL3 753 aa20.01■□□□□ 0.79
SYNPO-201ENST00000307662 POGZQ7Z3K3 1410 aa20.01■□□□□ 0.79
SYNPO-201ENST00000307662 EHBP1Q8NDI1 1231 aa20■□□□□ 0.79
SYNPO-201ENST00000307662 ZNF213O14771 459 aa20■□□□□ 0.79
SYNPO-201ENST00000307662 TAF7Q15545 349 aaPredicted RBP20■□□□□ 0.79
SYNPO-201ENST00000307662 GIGYF2Q6Y7W6 1299 aaKnown RBP20■□□□□ 0.79
SYNPO-201ENST00000307662 ZFP91Q96JP5 570 aaPredicted RBP20■□□□□ 0.79
SYNPO-201ENST00000307662 SRRTQ9BXP5 876 aaKnown RBP20■□□□□ 0.79
SYNPO-201ENST00000307662 DNAI1Q9UI46 699 aa20■□□□□ 0.79
SYNPO-201ENST00000307662 MAATS1Q7Z4T9 603 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 HMG20BQ9P0W2 317 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 PCDHB15Q9Y5E8 787 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 IL16Q14005 1332 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 URB2Q14146 1524 aaKnown RBP19.99■□□□□ 0.79
SYNPO-201ENST00000307662 GOLGA8AA7E2F4 631 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 LIG1P18858 919 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 MEX3CQ5U5Q3 659 aaKnown RBP19.99■□□□□ 0.79
SYNPO-201ENST00000307662 TOM1L2Q6ZVM7 507 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 NAPBQ9H115 298 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 NSD2O96028 1365 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 CCDC102BQ68D86 513 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 KANK3Q6NY19 840 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 SMC5Q8IY18 1101 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 METTL24Q5JXM2 366 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 SPECC1LQ69YQ0 1117 aa19.99■□□□□ 0.79
SYNPO-201ENST00000307662 SDSP20132 328 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 KCNH5Q8NCM2 988 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 UBASH3AP57075 661 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 GSTTP1A0A1W2PQM5 241 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 HSF2BPO75031 334 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 POTEJP0CG39 1038 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 MTIF2P46199 727 aaKnown RBP19.98■□□□□ 0.79
SYNPO-201ENST00000307662 ANAPC15P60006 121 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 JADE2Q9NQC1 790 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 RSPH14Q9UHP6 348 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 CKAP4Q07065 602 aaKnown RBP19.98■□□□□ 0.79
SYNPO-201ENST00000307662 BBXQ8WY36 941 aaPredicted RBP19.98■□□□□ 0.79
SYNPO-201ENST00000307662 NEK1Q96PY6 1258 aa19.98■□□□□ 0.79
SYNPO-201ENST00000307662 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.97■□□□□ 0.79
SYNPO-201ENST00000307662 CTAGE15A4D2H0 777 aa19.97■□□□□ 0.79
SYNPO-201ENST00000307662 CTAGE8P0CG41 777 aa19.97■□□□□ 0.79
SYNPO-201ENST00000307662 ZNF76P36508 570 aa19.97■□□□□ 0.79
SYNPO-201ENST00000307662 ISM2Q6H9L7 571 aa19.97■□□□□ 0.79
SYNPO-201ENST00000307662 CTAGE6Q86UF2 777 aa19.97■□□□□ 0.79
SYNPO-201ENST00000307662 CTAGE4Q8IX94 777 aa19.97■□□□□ 0.79
SYNPO-201ENST00000307662 RBM25P49756 843 aaKnown RBP19.97■□□□□ 0.79
SYNPO-201ENST00000307662 NME9Q86XW9 330 aa19.97■□□□□ 0.79
SYNPO-201ENST00000307662 DISP3Q9P2K9 1392 aa19.97■□□□□ 0.79
SYNPO-201ENST00000307662 CTCFLQ8NI51 663 aaPredicted RBP19.97■□□□□ 0.79
SYNPO-201ENST00000307662 TAOK3Q9H2K8 898 aa19.96■□□□□ 0.79
SYNPO-201ENST00000307662 USP16Q9Y5T5 823 aa19.96■□□□□ 0.79
SYNPO-201ENST00000307662 POLR3DP05423 398 aaPredicted RBP19.96■□□□□ 0.79
SYNPO-201ENST00000307662 USP5P45974 858 aa19.96■□□□□ 0.79
SYNPO-201ENST00000307662 FLIIQ13045 1269 aa19.96■□□□□ 0.79
SYNPO-201ENST00000307662 CEP112Q8N8E3 955 aa19.96■□□□□ 0.79
SYNPO-201ENST00000307662 CCDC85AQ96PX6 553 aaPredicted RBP19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms