RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 PLIN1O60240 522 aa31.53■■■□□ 2.64
SSBP4-201ENST00000270061 GIGYF1O75420 1035 aaPredicted RBP31.53■■■□□ 2.64
SSBP4-201ENST00000270061 IFT57Q9NWB7 429 aa31.53■■■□□ 2.64
SSBP4-201ENST00000270061 TSR2Q969E8 191 aaKnown RBP31.52■■■□□ 2.64
SSBP4-201ENST00000270061 BABAM1Q9NWV8 329 aa31.52■■■□□ 2.64
SSBP4-201ENST00000270061 BCORQ6W2J9 1755 aa31.52■■■□□ 2.64
SSBP4-201ENST00000270061 ZNF853P0CG23 659 aa31.51■■■□□ 2.64
SSBP4-201ENST00000270061 GNAI1P63096 354 aa31.51■■■□□ 2.64
SSBP4-201ENST00000270061 WWC3Q9ULE0 1092 aa31.51■■■□□ 2.64
SSBP4-201ENST00000270061 RARSP54136 660 aaKnown RBP31.51■■■□□ 2.63
SSBP4-201ENST00000270061 NRXN2Q9P2S2 1712 aa31.5■■■□□ 2.63
SSBP4-201ENST00000270061 DZIP3Q86Y13 1208 aaKnown RBP31.5■■■□□ 2.63
SSBP4-201ENST00000270061 BCAR3O75815 825 aa31.49■■■□□ 2.63
SSBP4-201ENST00000270061 BRCA1P38398 1863 aaKnown RBP31.49■■■□□ 2.63
SSBP4-201ENST00000270061 NBPF26B4DH59 902 aa31.48■■■□□ 2.63
SSBP4-201ENST00000270061 NBPF10Q6P3W6 841 aaKnown RBP31.48■■■□□ 2.63
SSBP4-201ENST00000270061 BICDL1Q6ZP65 573 aa31.48■■■□□ 2.63
SSBP4-201ENST00000270061 NBPF15Q8N660 670 aa31.48■■■□□ 2.63
SSBP4-201ENST00000270061 A0A0G2JLW4 131 aa31.48■■■□□ 2.63
SSBP4-201ENST00000270061 EXOSC9Q06265 439 aaKnown RBP31.48■■■□□ 2.63
SSBP4-201ENST00000270061 CAMTA2O94983 1202 aa31.47■■■□□ 2.63
SSBP4-201ENST00000270061 CFAP44Q96MT7 982 aa31.47■■■□□ 2.63
SSBP4-201ENST00000270061 SERPINB2P05120 415 aa31.46■■■□□ 2.63
SSBP4-201ENST00000270061 TBC1D9BQ66K14 1250 aa31.46■■■□□ 2.63
SSBP4-201ENST00000270061 EXOC6Q8TAG9 804 aa31.45■■■□□ 2.63
SSBP4-201ENST00000270061 DPEP1P16444 411 aa31.45■■■□□ 2.62
SSBP4-201ENST00000270061 LAS1LQ9Y4W2 734 aaKnown RBP31.43■■■□□ 2.62
SSBP4-201ENST00000270061 CARMIL3Q8ND23 1372 aa31.41■■■□□ 2.62
SSBP4-201ENST00000270061 CHL1O00533 1208 aa31.41■■■□□ 2.62
SSBP4-201ENST00000270061 ZNF428Q96B54 188 aa31.41■■■□□ 2.62
SSBP4-201ENST00000270061 C20orf194Q5TEA3 1177 aa31.4■■■□□ 2.62
SSBP4-201ENST00000270061 CLEC4GQ6UXB4 293 aa31.4■■■□□ 2.62
SSBP4-201ENST00000270061 SETDB2Q96T68 719 aa31.4■■■□□ 2.62
SSBP4-201ENST00000270061 ZNF652Q9Y2D9 606 aa31.4■■■□□ 2.62
SSBP4-201ENST00000270061 PDE3AQ14432 1141 aa31.4■■■□□ 2.62
SSBP4-201ENST00000270061 B4GALNT3Q6L9W6 998 aa31.39■■■□□ 2.62
SSBP4-201ENST00000270061 CRBNQ96SW2 442 aa31.39■■■□□ 2.62
SSBP4-201ENST00000270061 MBIPQ9NS73 344 aa31.39■■■□□ 2.62
SSBP4-201ENST00000270061 BCS1LQ9Y276 419 aa31.39■■■□□ 2.62
SSBP4-201ENST00000270061 KCNA3P22001 575 aa31.38■■■□□ 2.61
SSBP4-201ENST00000270061 ARFGEF1Q9Y6D6 1849 aa31.37■■■□□ 2.61
SSBP4-201ENST00000270061 MYL6BP14649 208 aa31.37■■■□□ 2.61
SSBP4-201ENST00000270061 PIM2Q9P1W9 311 aa31.37■■■□□ 2.61
SSBP4-201ENST00000270061 ERBB4Q15303 1308 aa31.37■■■□□ 2.61
SSBP4-201ENST00000270061 EIF2S2P20042 333 aaKnown RBP31.36■■■□□ 2.61
SSBP4-201ENST00000270061 CHRNA5P30532 468 aa31.36■■■□□ 2.61
SSBP4-201ENST00000270061 NUP98P52948 1817 aa31.36■■■□□ 2.61
SSBP4-201ENST00000270061 RGL2O15211 777 aa31.35■■■□□ 2.61
SSBP4-201ENST00000270061 ANKRD31Q8N7Z5 1873 aa31.35■■■□□ 2.61
SSBP4-201ENST00000270061 CCDC136Q96JN2 1154 aa31.35■■■□□ 2.61
SSBP4-201ENST00000270061 DLEC1Q9Y238 1755 aa31.35■■■□□ 2.61
SSBP4-201ENST00000270061 ALDH1L2Q3SY69 923 aa31.34■■■□□ 2.61
SSBP4-201ENST00000270061 NPHP1O15259 732 aa31.33■■■□□ 2.61
SSBP4-201ENST00000270061 PRR5LQ6MZQ0 368 aa31.33■■■□□ 2.61
SSBP4-201ENST00000270061 CNBD1Q8NA66 436 aa31.32■■■□□ 2.6
SSBP4-201ENST00000270061 DALRD3Q5D0E6 543 aaKnown RBP31.31■■■□□ 2.6
SSBP4-201ENST00000270061 KIF6Q6ZMV9 814 aa31.31■■■□□ 2.6
SSBP4-201ENST00000270061 VAMP4O75379 141 aa31.3■■■□□ 2.6
SSBP4-201ENST00000270061 BRPF1P55201 1214 aaPredicted RBP31.3■■■□□ 2.6
SSBP4-201ENST00000270061 HLFQ16534 295 aa31.3■■■□□ 2.6
SSBP4-201ENST00000270061 KRT24Q2M2I5 525 aa31.3■■■□□ 2.6
SSBP4-201ENST00000270061 ZNF784Q8NCA9 323 aaPredicted RBP31.3■■■□□ 2.6
SSBP4-201ENST00000270061 MAP3K15Q6ZN16 1313 aa31.3■■■□□ 2.6
SSBP4-201ENST00000270061 ERVV-1B6SEH8 477 aa31.3■■■□□ 2.6
SSBP4-201ENST00000270061 SSH1Q8WYL5 1049 aa31.3■■■□□ 2.6
SSBP4-201ENST00000270061 NIP7Q9Y221 180 aaKnown RBP eCLIP31.3■■■□□ 2.6
SSBP4-201ENST00000270061 TTLL7Q6ZT98 887 aa31.29■■■□□ 2.6
SSBP4-201ENST00000270061 BRIP1Q9BX63 1249 aa31.29■■■□□ 2.6
SSBP4-201ENST00000270061 NBPF5PQ86XG9 351 aaPredicted RBP31.28■■■□□ 2.6
SSBP4-201ENST00000270061 CCDC24Q8N4L8 307 aa31.28■■■□□ 2.6
SSBP4-201ENST00000270061 NECTIN2Q92692 538 aa31.28■■■□□ 2.6
SSBP4-201ENST00000270061 SMC4Q9NTJ3 1288 aa31.28■■■□□ 2.6
SSBP4-201ENST00000270061 H0YIN7 160 aa31.28■■■□□ 2.6
SSBP4-201ENST00000270061 ST5P78524 1137 aa31.28■■■□□ 2.6
SSBP4-201ENST00000270061 PDIA6Q15084 440 aa31.28■■■□□ 2.6
SSBP4-201ENST00000270061 C2CD5Q86YS7 1000 aa31.28■■■□□ 2.6
SSBP4-201ENST00000270061 BCL2L13Q9BXK5 485 aa31.28■■■□□ 2.6
SSBP4-201ENST00000270061 PDE6BP35913 854 aa31.27■■■□□ 2.6
SSBP4-201ENST00000270061 FRAT1Q92837 279 aaPredicted RBP31.27■■■□□ 2.6
SSBP4-201ENST00000270061 HOXB7P09629 217 aa31.25■■■□□ 2.59
SSBP4-201ENST00000270061 PDZRN3Q9UPQ7 1066 aa31.25■■■□□ 2.59
SSBP4-201ENST00000270061 PROSER3Q2NL68 480 aa31.25■■■□□ 2.59
SSBP4-201ENST00000270061 ZKSCAN2Q63HK3 967 aa31.25■■■□□ 2.59
SSBP4-201ENST00000270061 ARHGAP27Q6ZUM4 889 aa31.25■■■□□ 2.59
SSBP4-201ENST00000270061 LRP10Q7Z4F1 713 aa31.25■■■□□ 2.59
SSBP4-201ENST00000270061 ZBTB3Q9H5J0 574 aa31.25■■■□□ 2.59
SSBP4-201ENST00000270061 COL11A2P13942 1736 aaPredicted RBP31.24■■■□□ 2.59
SSBP4-201ENST00000270061 ANXA1P04083 346 aa31.24■■■□□ 2.59
SSBP4-201ENST00000270061 MS4A1P11836 297 aa31.24■■■□□ 2.59
SSBP4-201ENST00000270061 TWISTNBQ3B726 338 aaPredicted RBP31.24■■■□□ 2.59
SSBP4-201ENST00000270061 TSPYL6Q8N831 410 aa31.24■■■□□ 2.59
SSBP4-201ENST00000270061 TPTE2Q6XPS3 522 aa31.23■■■□□ 2.59
SSBP4-201ENST00000270061 C8orf58Q8NAV2 365 aa31.23■■■□□ 2.59
SSBP4-201ENST00000270061 HDGFL1Q5TGJ6 251 aa31.22■■■□□ 2.59
SSBP4-201ENST00000270061 KIF16BQ96L93 1317 aa31.22■■■□□ 2.59
SSBP4-201ENST00000270061 ATP10DQ9P241 1426 aa31.22■■■□□ 2.59
SSBP4-201ENST00000270061 FAM177BA6PVY3 158 aa31.21■■■□□ 2.59
SSBP4-201ENST00000270061 TTLL6Q8N841 843 aa31.21■■■□□ 2.59
SSBP4-201ENST00000270061 DDX21Q9NR30 783 aaKnown RBP eCLIP31.21■■■□□ 2.59
SSBP4-201ENST00000270061 CACNA1SQ13698 1873 aa31.19■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms