RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 PIM2Q9P1W9 311 aa29.96■■■□□ 2.39
LSM4-201ENST00000252816 RGL2O15211 777 aa29.95■■■□□ 2.39
LSM4-201ENST00000252816 LRP10Q7Z4F1 713 aa29.95■■■□□ 2.39
LSM4-201ENST00000252816 MBIPQ9NS73 344 aa29.95■■■□□ 2.39
LSM4-201ENST00000252816 PROSER3Q2NL68 480 aa29.94■■■□□ 2.38
LSM4-201ENST00000252816 NECTIN2Q92692 538 aa29.94■■■□□ 2.38
LSM4-201ENST00000252816 ANXA1P04083 346 aa29.93■■■□□ 2.38
LSM4-201ENST00000252816 MAP3K15Q6ZN16 1313 aa29.93■■■□□ 2.38
LSM4-201ENST00000252816 CNBD1Q8NA66 436 aa29.92■■■□□ 2.38
LSM4-201ENST00000252816 ZNF784Q8NCA9 323 aaPredicted RBP29.92■■■□□ 2.38
LSM4-201ENST00000252816 IFT57Q9NWB7 429 aa29.92■■■□□ 2.38
LSM4-201ENST00000252816 ERVV-1B6SEH8 477 aa29.91■■■□□ 2.38
LSM4-201ENST00000252816 CALD1Q05682 793 aaKnown RBP29.91■■■□□ 2.38
LSM4-201ENST00000252816 DALRD3Q5D0E6 543 aaKnown RBP29.91■■■□□ 2.38
LSM4-201ENST00000252816 NIP7Q9Y221 180 aaKnown RBP eCLIP29.91■■■□□ 2.38
LSM4-201ENST00000252816 KIF6Q6ZMV9 814 aa29.9■■■□□ 2.38
LSM4-201ENST00000252816 C2CD5Q86YS7 1000 aa29.9■■■□□ 2.38
LSM4-201ENST00000252816 BRIP1Q9BX63 1249 aa29.9■■■□□ 2.38
LSM4-201ENST00000252816 ANKRD31Q8N7Z5 1873 aa29.9■■■□□ 2.38
LSM4-201ENST00000252816 GNAI1P63096 354 aa29.89■■■□□ 2.38
LSM4-201ENST00000252816 NBPF5PQ86XG9 351 aaPredicted RBP29.89■■■□□ 2.38
LSM4-201ENST00000252816 ZBTB3Q9H5J0 574 aa29.89■■■□□ 2.38
LSM4-201ENST00000252816 H0YIN7 160 aa29.87■■■□□ 2.37
LSM4-201ENST00000252816 HOXB7P09629 217 aa29.87■■■□□ 2.37
LSM4-201ENST00000252816 CCDC27Q2M243 656 aa29.87■■■□□ 2.37
LSM4-201ENST00000252816 DUSP27Q5VZP5 1158 aa29.87■■■□□ 2.37
LSM4-201ENST00000252816 NPHP1O15259 732 aa29.86■■■□□ 2.37
LSM4-201ENST00000252816 ARFGEF1Q9Y6D6 1849 aa29.85■■■□□ 2.37
LSM4-201ENST00000252816 PDE6BP35913 854 aa29.85■■■□□ 2.37
LSM4-201ENST00000252816 ST5P78524 1137 aa29.85■■■□□ 2.37
LSM4-201ENST00000252816 HDGFL1Q5TGJ6 251 aa29.85■■■□□ 2.37
LSM4-201ENST00000252816 ARHGAP27Q6ZUM4 889 aa29.85■■■□□ 2.37
LSM4-201ENST00000252816 WWC1Q8IX03 1113 aa29.85■■■□□ 2.37
LSM4-201ENST00000252816 DDX21Q9NR30 783 aaKnown RBP eCLIP29.85■■■□□ 2.37
LSM4-201ENST00000252816 DLEC1Q9Y238 1755 aa29.85■■■□□ 2.37
LSM4-201ENST00000252816 NUP98P52948 1817 aa29.85■■■□□ 2.37
LSM4-201ENST00000252816 FAM177BA6PVY3 158 aa29.84■■■□□ 2.37
LSM4-201ENST00000252816 CHPF2Q9P2E5 772 aa29.84■■■□□ 2.37
LSM4-201ENST00000252816 ATP10DQ9P241 1426 aa29.84■■■□□ 2.37
LSM4-201ENST00000252816 COPS6Q7L5N1 327 aa29.83■■■□□ 2.37
LSM4-201ENST00000252816 TPTE2Q6XPS3 522 aa29.82■■■□□ 2.36
LSM4-201ENST00000252816 GIGYF2Q6Y7W6 1299 aaKnown RBP29.82■■■□□ 2.36
LSM4-201ENST00000252816 FAM9BQ8IZU0 186 aa29.82■■■□□ 2.36
LSM4-201ENST00000252816 TTLL6Q8N841 843 aa29.82■■■□□ 2.36
LSM4-201ENST00000252816 XAGE3Q8WTP9 111 aa29.82■■■□□ 2.36
LSM4-201ENST00000252816 PDZRN3Q9UPQ7 1066 aa29.82■■■□□ 2.36
LSM4-201ENST00000252816 COL11A2P13942 1736 aaPredicted RBP29.82■■■□□ 2.36
LSM4-201ENST00000252816 UBN2Q6ZU65 1347 aa29.81■■■□□ 2.36
LSM4-201ENST00000252816 GPTP24298 496 aa29.81■■■□□ 2.36
LSM4-201ENST00000252816 NCBP3Q53F19 620 aaKnown RBP29.81■■■□□ 2.36
LSM4-201ENST00000252816 ADCY9O60503 1353 aa29.8■■■□□ 2.36
LSM4-201ENST00000252816 AIMP1Q12904 312 aaKnown RBP29.8■■■□□ 2.36
LSM4-201ENST00000252816 ZNF34Q8IZ26 560 aa29.8■■■□□ 2.36
LSM4-201ENST00000252816 C8orf58Q8NAV2 365 aa29.8■■■□□ 2.36
LSM4-201ENST00000252816 ZNF622Q969S3 477 aaKnown RBP eCLIP29.8■■■□□ 2.36
LSM4-201ENST00000252816 ELL2O00472 640 aaPredicted RBP29.79■■■□□ 2.36
LSM4-201ENST00000252816 SALL2Q9Y467 1007 aaPredicted RBP29.78■■■□□ 2.36
LSM4-201ENST00000252816 SRGNP10124 158 aa29.77■■■□□ 2.36
LSM4-201ENST00000252816 TSR2Q969E8 191 aaKnown RBP29.77■■■□□ 2.36
LSM4-201ENST00000252816 DBF4Q9UBU7 674 aaPredicted RBP29.77■■■□□ 2.36
LSM4-201ENST00000252816 SUSD4Q5VX71 490 aa29.76■■■□□ 2.35
LSM4-201ENST00000252816 NUTM1Q86Y26 1132 aa29.76■■■□□ 2.35
LSM4-201ENST00000252816 KLRG2A4D1S0 409 aaPredicted RBP29.75■■■□□ 2.35
LSM4-201ENST00000252816 NYXQ9GZU5 481 aa29.75■■■□□ 2.35
LSM4-201ENST00000252816 ABCC12Q96J65 1359 aa29.75■■■□□ 2.35
LSM4-201ENST00000252816 IL16Q14005 1332 aa29.74■■■□□ 2.35
LSM4-201ENST00000252816 GTF2E1P29083 439 aaPredicted RBP29.74■■■□□ 2.35
LSM4-201ENST00000252816 STYK1Q6J9G0 422 aa29.74■■■□□ 2.35
LSM4-201ENST00000252816 TSPYL6Q8N831 410 aa29.74■■■□□ 2.35
LSM4-201ENST00000252816 ERFEQ4G0M1 354 aa29.73■■■□□ 2.35
LSM4-201ENST00000252816 MASTLQ96GX5 879 aa29.73■■■□□ 2.35
LSM4-201ENST00000252816 IBTKQ9P2D0 1353 aaPredicted RBP29.73■■■□□ 2.35
LSM4-201ENST00000252816 NTSR2O95665 410 aa29.72■■■□□ 2.35
LSM4-201ENST00000252816 HYPKQ9NX55 129 aa29.72■■■□□ 2.35
LSM4-201ENST00000252816 CNKSR1Q969H4 720 aa29.71■■■□□ 2.35
LSM4-201ENST00000252816 TNRC6CQ9HCJ0 1690 aaKnown RBP29.7■■■□□ 2.35
LSM4-201ENST00000252816 PARP10Q53GL7 1025 aa29.7■■■□□ 2.35
LSM4-201ENST00000252816 C9orf131Q5VYM1 1079 aa29.7■■■□□ 2.35
LSM4-201ENST00000252816 RASSF7Q02833 373 aa29.69■■■□□ 2.34
LSM4-201ENST00000252816 TCIRG1Q13488 830 aa29.69■■■□□ 2.34
LSM4-201ENST00000252816 HSP90AB3PQ58FF7 597 aa29.69■■■□□ 2.34
LSM4-201ENST00000252816 PRPF40BQ6NWY9 871 aaKnown RBP29.69■■■□□ 2.34
LSM4-201ENST00000252816 ANKRD13DQ6ZTN6 518 aa29.69■■■□□ 2.34
LSM4-201ENST00000252816 WDR63Q8IWG1 891 aa29.69■■■□□ 2.34
LSM4-201ENST00000252816 PLBD2Q8NHP8 589 aa29.69■■■□□ 2.34
LSM4-201ENST00000252816 ZNF219Q9P2Y4 722 aaPredicted RBP29.69■■■□□ 2.34
LSM4-201ENST00000252816 C21orf2O43822 256 aa29.68■■■□□ 2.34
LSM4-201ENST00000252816 NPR1P16066 1061 aa29.68■■■□□ 2.34
LSM4-201ENST00000252816 PPP1R42Q7Z4L9 355 aa29.68■■■□□ 2.34
LSM4-201ENST00000252816 SLX4Q8IY92 1834 aa29.68■■■□□ 2.34
LSM4-201ENST00000252816 NLRP10Q86W26 655 aa29.67■■■□□ 2.34
LSM4-201ENST00000252816 NFKBIEO00221 500 aa29.66■■■□□ 2.34
LSM4-201ENST00000252816 PRELPP51888 382 aa29.66■■■□□ 2.34
LSM4-201ENST00000252816 ZNF526Q8TF50 670 aaPredicted RBP29.66■■■□□ 2.34
LSM4-201ENST00000252816 UTP14AQ9BVJ6 771 aaKnown RBP29.66■■■□□ 2.34
LSM4-201ENST00000252816 PHAXQ9H814 394 aaKnown RBP29.66■■■□□ 2.34
LSM4-201ENST00000252816 ANKRD36CQ5JPF3 1778 aa29.66■■■□□ 2.34
LSM4-201ENST00000252816 FANCIQ9NVI1 1328 aa29.66■■■□□ 2.34
LSM4-201ENST00000252816 RIC1Q4ADV7 1423 aa29.65■■■□□ 2.34
LSM4-201ENST00000252816 CRY2Q49AN0 593 aa29.65■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms