RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 UBE2E3Q969T4 207 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 SCRN2Q96FV2 425 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 PDLIM5Q96HC4 596 aaKnown RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 LINC00597Q9H2U6 94 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 BRD7Q9NPI1 651 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 UBQLN2Q9UHD9 624 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 ASCC3Q8N3C0 2202 aaKnown RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 IRGMA1A4Y4 181 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 POM121CA8CG34 1229 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 H3BQ06 376 aaPredicted RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 H3BSH0 61 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 J3QLW9 94 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 FRS3O43559 492 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 TSPAN6O43657 245 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 PLATP00750 562 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 ADAP00813 363 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 MRPL3P09001 348 aaKnown RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 CD3GP09693 182 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 ELFN1P0C7U0 828 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 CBSLP0DN79 551 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 ZNF19P17023 458 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 CBSP35520 551 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 GZMKP49863 264 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 RNF144AP50876 292 aaPredicted RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 SGSHP51688 502 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 RRAS2P62070 204 aaPredicted RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 KCNJ10P78508 379 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 RBBP4Q09028 425 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 GPR50Q13585 617 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.52□□□□□ -0.73
CLN3-244ENST00000636147 OR2AP1Q8NGE2 309 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 SLC35G5Q96KT7 338 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 CDCP1Q9H5V8 836 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 TMEM184CQ9NVA4 438 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 TBC1D24Q9ULP9 559 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 PLAGL1Q9UM63 463 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 COL5A3P25940 1745 aaPredicted RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 NPIPB15A6NHN6 443 aaPredicted RBP10.51□□□□□ -0.73
CLN3-244ENST00000636147 M0QZQ0 153 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 RGS13O14921 159 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 APOC3P02656 99 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 LCN1P31025 176 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 ACVR1BP36896 505 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 GPR1P46091 355 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 CENPAP49450 140 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 ARF5P84085 180 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 DUSP7Q16829 419 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 LIPJQ5W064 366 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 SLC25A25Q6KCM7 469 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 SLC27A4Q6P1M0 643 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 KIF18BQ86Y91 864 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 CMTM8Q8IZV2 173 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 PROKR2Q8NFJ6 384 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 PIGXQ8TBF5 258 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 ING5Q8WYH8 240 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 SLC12A9Q9BXP2 914 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 RHBGQ9H310 441 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 FOLH1BQ9HBA9 442 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 ABCA3Q99758 1704 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 XIRP1Q702N8 1843 aaKnown RBP10.51□□□□□ -0.73
CLN3-244ENST00000636147 URB1O60287 2271 aaKnown RBP10.51□□□□□ -0.73
CLN3-244ENST00000636147 FXYD6-FXYD2A0A087WZ82 144 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 UBE2QL1A1L167 161 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 SYN3O14994 580 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 HCN1O60741 890 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 LRG1P02750 347 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 C8orf89P0DMQ9 161 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 MEDAGQ5VYS4 303 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 AFMIDQ63HM1 303 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 ZNF467Q7Z7K2 595 aaPredicted RBP10.51□□□□□ -0.73
CLN3-244ENST00000636147 VRK3Q8IV63 474 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 RAB42Q8N4Z0 105 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 OPALINQ96PE5 141 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 ZCCHC2Q9C0B9 1178 aaKnown RBP10.51□□□□□ -0.73
CLN3-244ENST00000636147 SRRQ9GZT4 340 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 FXYD6Q9H0Q3 95 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 OR51I1Q9H343 314 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 RANBP3Q9H6Z4 567 aaPredicted RBP10.51□□□□□ -0.73
CLN3-244ENST00000636147 CNIH4Q9P003 139 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 B8ZZF3 427 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 EPHX1P07099 455 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 STARP49675 285 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 EFR3AQ14156 821 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 GRB14Q14449 540 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 SLC30A6Q6NXT4 461 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 FAHD1Q6P587 224 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 CHCHD4Q8N4Q1 142 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 KIAA1958Q8N8K9 716 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 SRFBP1Q8NEF9 429 aaKnown RBP10.51□□□□□ -0.73
CLN3-244ENST00000636147 OR4F15Q8NGB8 312 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 ZFAND1Q8TCF1 268 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 IL17FQ96PD4 163 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 TRIB3Q96RU7 358 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 PHF11Q9UIL8 331 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 FBXW2Q9UKT8 454 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 NAALAD2Q9Y3Q0 740 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 PCDHGA2Q9Y5H1 932 aa10.51□□□□□ -0.73
CLN3-244ENST00000636147 NEDD8-MDP1E9PL57 170 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 LRRTM2O43300 516 aa10.5□□□□□ -0.73
CLN3-244ENST00000636147 OR1F1O43749 312 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms