RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FERMT1Q9BQL6 677 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 TXLNGYQ9BZA5 131 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 WWP1Q9H0M0 922 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 NANOGQ9H9S0 305 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 PFDN4Q9NQP4 134 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 C5AR2Q9P296 337 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 GMEB2Q9UKD1 530 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 TTLL3Q9Y4R7 772 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 CCL27Q9Y4X3 112 aa1.59□□□□□ -2.15
SCN1A-208ENST00000625916 RAI1Q7Z5J4 1906 aaPredicted RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 A0A0U1RQK1 487 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 MFSD2BA6NFX1 497 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 CCDC188H7C350 402 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 ACSL4O60488 711 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 EIF5BO60841 1220 aaKnown RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 FCGR3BO75015 233 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 GPX5O75715 221 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 RPN1P04843 607 aaKnown RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 VIMP08670 466 aaKnown RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 TOP1P11387 765 aaKnown RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 LBPP18428 481 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 UGT1A6P19224 532 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 PSMB4P28070 264 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 IL2RGP31785 369 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 KRT20P35900 424 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 XCR1P46094 333 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 OR3A4PP47883 348 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 GMPSP49915 693 aaPredicted RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF131P52739 623 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 SLC12A3P55017 1021 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 PFN3P60673 137 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 RPL27P61353 136 aaKnown RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 MPPED2Q15777 294 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 CCDC14Q49A88 953 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 ACER2Q5QJU3 275 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF770Q6IQ21 691 aaPredicted RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 DNAJB7Q7Z6W7 309 aaPredicted RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 TIGD4Q8IY51 512 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 KIF18AQ8NI77 898 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 MARC2Q969Z3 335 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 FER1L6-AS2Q96M78 137 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 PRMT1Q99873 361 aaKnown RBP1.58□□□□□ -2.16
SCN1A-208ENST00000625916 ST6GALNAC4Q9H4F1 302 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF665Q9H7R5 613 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF702PQ9H963 129 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 NKIRAS2Q9NYR9 191 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 RAI14Q9P0K7 980 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 DPM3Q9P2X0 92 aa1.58□□□□□ -2.16
SCN1A-208ENST00000625916 FAM86B1E9PN63 330 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 PSMD3O43242 534 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 SNAI2O43623 268 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 NUDT21O43809 227 aaKnown RBP1.57□□□□□ -2.16
SCN1A-208ENST00000625916 KIAA0513O60268 411 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 CLN5O75503 358 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 GOT2P00505 430 aaKnown RBP1.57□□□□□ -2.16
SCN1A-208ENST00000625916 GBAP04062 536 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 MMP10P09238 476 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 FAM86B2P0C5J1 330 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 ANKRD34CP0C6C1 535 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 CCDC166P0CW27 439 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 PTAFRP25105 342 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 PMELP40967 661 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 CAPZA1P52907 286 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 RAD23AP54725 363 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 NAGLUP54802 743 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF45Q02386 682 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 LCP2Q13094 533 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 MSLNQ13421 630 aaPredicted RBP1.57□□□□□ -2.16
SCN1A-208ENST00000625916 HERPUD1Q15011 391 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 UNC50Q53HI1 259 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 NHSL2Q5HYW2 709 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 C1orf141Q5JVX7 400 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 SHEQ5VZ18 495 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 FAM91A1Q658Y4 838 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 RPUSD3Q6P087 351 aaKnown RBP1.57□□□□□ -2.16
SCN1A-208ENST00000625916 TFAP2EQ6VUC0 442 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 OTOAQ7RTW8 1153 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 MEX3DQ86XN8 651 aaKnown RBP1.57□□□□□ -2.16
SCN1A-208ENST00000625916 DZIP1Q86YF9 867 aaKnown RBP1.57□□□□□ -2.16
SCN1A-208ENST00000625916 C4orf19Q8IY42 314 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 ZNF786Q8N393 782 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 GVQW1Q8N7I0 195 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 CCDC191Q8NCU4 936 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 CCDC26Q8TAB7 109 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 TFB1MQ8WVM0 346 aaKnown RBP1.57□□□□□ -2.16
SCN1A-208ENST00000625916 RAB3IPQ96QF0 476 aaPredicted RBP1.57□□□□□ -2.16
SCN1A-208ENST00000625916 INPP5KQ9BT40 448 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 CENPOQ9BU64 300 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 MIEF1Q9NQG6 463 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 ANAPC5Q9UJX4 755 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 ETV7Q9Y603 341 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 ASTN1O14525 1302 aa1.57□□□□□ -2.16
SCN1A-208ENST00000625916 CHD4Q14839 1912 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 IGKV1D-17A0A075B6S4 117 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 A0A087WV48 116 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 A0A0B4J203 849 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 ARHGEF37A1IGU5 675 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 LRCOL1A6NCL2 159 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 CCSO14618 274 aa1.56□□□□□ -2.16
SCN1A-208ENST00000625916 FIBPO43427 364 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms