RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SLC44A3Q8N4M1 653 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ZNF383Q8NA42 475 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 OR10A6Q8NH74 314 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 CHTF18Q8WVB6 975 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 LRR1Q96L50 414 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 MS4A4EQ96PG1 132 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 INPP5KQ9BT40 448 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 TMPRSS13Q9BYE2 586 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.17□□□□□ -0.34e-7■■□□□ 13.4
SHMT2-226ENST00000556825 ZNF624Q9P2J8 865 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ERI2A8K979 691 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 I6L893 689 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 SEMA7AO75326 666 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ADRA2AP08913 450 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 PEPDP12955 493 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 CRKP46108 304 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 CASP9P55211 416 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 POU4F2Q12837 409 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ELAVL2Q12926 359 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 PICALMQ13492 652 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 CSHL1Q14406 222 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 APOBEC3HQ6NTF7 200 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 GPR153Q6NV75 609 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 NPSR1Q6W5P4 371 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ETV3LQ6ZN32 361 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 FAM122BQ7Z309 247 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 NUDT13Q86X67 352 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 OR4A15Q8NGL6 344 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 SERINC2Q96SA4 455 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 TCF25Q9BQ70 676 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ZNF559Q9BR84 538 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 C7orf50Q9BRJ6 194 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ABCG5Q9H222 651 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 KLHL31Q9H511 634 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 UNKLQ9H9P5 680 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 EXOSC3Q9NQT5 275 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 TXNL4BQ9NX01 149 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 NDUFB11Q9NX14 153 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 MS4A12Q9NXJ0 267 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ZNF226Q9NYT6 803 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 CNOT2Q9NZN8 540 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 CHST2Q9Y4C5 530 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 CFAP20Q9Y6A4 193 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ACOD1A6NK06 481 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 CACNB4O00305 520 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 TCRBP04435 133 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 UGT2B7P16662 529 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 RAG2P55895 527 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 TAS2R39P59534 338 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 TGFB2P61812 414 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 NUTF2P61970 127 aaKnown RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 E2F1Q01094 437 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 NTRK2Q16620 822 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 GSG1Q2KHT4 349 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 INTS6LQ5JSJ4 861 aaKnown RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 MANEAQ5SRI9 462 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 TMEM91Q6ZNR0 172 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 Q6ZPB1 254 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 PLA2G15Q8NCC3 412 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 TMEM161BQ8NDZ6 487 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 POC1BQ8TC44 478 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 SLAMF9Q96A28 289 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 WDR18Q9BV38 432 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 CHRDQ9H2X0 955 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 DBNDD1Q9H9R9 158 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 MRPS30Q9NP92 439 aaKnown RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 WASF3Q9UPY6 502 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 NEUROG3Q9Y4Z2 214 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 OTOFQ9HC10 1997 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 TMEM218A2RU14 115 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 URADA6NGE7 173 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 RAB3DO95716 219 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 ATXN1LP0C7T5 689 aaKnown RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 LCP1P13796 627 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 FOXA1P55317 472 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 ANKS6Q68DC2 871 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 PLAG1Q6DJT9 500 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 CHST14Q8NCH0 376 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 BEST4Q8NFU0 473 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 OR6B3Q8NGW1 331 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 CENPIQ92674 756 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 KCNC2Q96PR1 638 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 ADPGKQ9BRR6 497 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 NLNQ9BYT8 704 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 SEMA6CQ9H3T2 930 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 MID1IP1Q9NPA3 183 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 PRDM5Q9NQX1 630 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 RNF19AQ9NV58 838 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 RCOR3Q9P2K3 495 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 TCEAL9Q9UHQ7 104 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 LSM2Q9Y333 95 aaKnown RBP13.16□□□□□ -0.3
SHMT2-226ENST00000556825 ASB1Q9Y576 335 aa13.16□□□□□ -0.3
SHMT2-226ENST00000556825 PRAMEF2O60811 474 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 LATS1O95835 1130 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 CKBP12277 381 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 DRD2P14416 443 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 ZNF44P15621 663 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 PAX6P26367 422 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 GNALP38405 381 aa13.15□□□□□ -0.3
SHMT2-226ENST00000556825 BDKRB1P46663 353 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms