RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 RPS2P15880 293 aaKnown RBP9.02□□□□□ -0.97
CLIP1-214ENST00000540539 ANXA7P20073 488 aaKnown RBP9.02□□□□□ -0.97
CLIP1-214ENST00000540539 ITGB7P26010 798 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 CRYBB2P43320 205 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 HTR5AP47898 357 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 SELENOPP49908 381 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 SV2CQ496J9 727 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 FBXO48Q5FWF7 155 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 XKR3Q5GH77 459 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 SAPCD1Q5SSQ6 148 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 ADGRF1Q5T601 910 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 B3GNTL1Q67FW5 361 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-214ENST00000540539 ZC3H14Q6PJT7 736 aaKnown RBP9.02□□□□□ -0.97
CLIP1-214ENST00000540539 NPSR1Q6W5P4 371 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 C15orf39Q6ZRI6 1047 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 USP30Q70CQ3 517 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 ZNF605Q86T29 641 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 SPAG16Q8N0X2 631 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 ZNF248Q8NDW4 579 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 BEST4Q8NFU0 473 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 OR9A2Q8NGT5 310 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 THAP6Q8TBB0 222 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 ZNF516Q92618 1163 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 ZC3H10Q96K80 434 aaKnown RBP9.02□□□□□ -0.97
CLIP1-214ENST00000540539 MFSD14AQ96MC6 490 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 ZNF583Q96ND8 569 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 KCTD15Q96SI1 283 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-214ENST00000540539 APOL2Q9BQE5 337 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 SEMA6CQ9H3T2 930 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 PXMP2Q9NR77 195 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 RAD18Q9NS91 495 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 RNF186Q9NXI6 227 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 DNAJC15Q9Y5T4 150 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 NPTNQ9Y639 398 aa9.02□□□□□ -0.97
CLIP1-214ENST00000540539 MCM3APO60318 1980 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PLXNA1Q9UIW2 1896 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PLSCR5A0PG75 271 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 LRIT2A6NDA9 550 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 SOWAHBA6NEL2 793 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 C1orf196B1AJZ1 125 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 ZNF879B4DU55 563 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PIP5K1BO14986 540 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 AP2A2O94973 939 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 NPRL3Q12980 569 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PDZK1IP1Q13113 114 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 DMP1Q13316 513 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-214ENST00000540539 OLIG2Q13516 323 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 IL18Q14116 193 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 HLXQ14774 488 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-214ENST00000540539 ALG11Q2TAA5 492 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 LBHQ53QV2 105 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-214ENST00000540539 HSDL2Q6YN16 418 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 CEP97Q8IW35 865 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 SKA3Q8IX90 412 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 OR5M9Q8NGP3 310 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 OR6X1Q8NH79 312 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 IL31RAQ8NI17 732 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PCDH19Q8TAB3 1148 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 CYP2S1Q96SQ9 504 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PDCD2LQ9BRP1 358 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 ABCG8Q9H221 673 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 GSTO2Q9H4Y5 243 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 NRBP2Q9NSY0 501 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 FAM212BQ9NTI7 297 aaPredicted RBP9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PCDHB7Q9Y5E2 793 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 MGAMO43451 1857 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 BPTFQ12830 3046 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 DNAJC25-GNG10A0A024R161 153 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 MYO1GB0I1T2 1018 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 GFRA2O00451 464 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 ADAMDEC1O15204 470 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 KHDRBS3O75525 346 aaKnown RBP9.01□□□□□ -0.97
CLIP1-214ENST00000540539 RAB3DO95716 219 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 GUCA1CO95843 209 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 OR8U8P0C7N1 319 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 ZNF44P15621 663 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 NPR2P20594 1047 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 BTCP35070 178 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 MMP12P39900 470 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 MATKP42679 507 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 ACLYP53396 1101 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 RAB2AP61019 212 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 NUTF2P61970 127 aaKnown RBP9.01□□□□□ -0.97
CLIP1-214ENST00000540539 ILF3Q12906 894 aaKnown RBP eCLIP9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PGM5Q15124 567 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 MBOAT1Q6ZNC8 495 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PDZD3Q86UT5 571 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 TMEM17Q86X19 198 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 CLDN22Q8N7P3 220 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 OR2T12Q8NG77 320 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 OR10Q1Q8NGQ4 319 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 WFIKKN2Q8TEU8 576 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PHF21BQ96EK2 531 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PRDM13Q9H4Q3 707 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 PRDM12Q9H4Q4 367 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 NCOR1P1Q9H4R4 102 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 NSUN3Q9H649 340 aaKnown RBP9.01□□□□□ -0.97
CLIP1-214ENST00000540539 EXOSC3Q9NQT5 275 aaKnown RBP9.01□□□□□ -0.97
CLIP1-214ENST00000540539 GPATCH2LQ9NWQ4 482 aa9.01□□□□□ -0.97
CLIP1-214ENST00000540539 CFAP97Q9P2B7 532 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms