RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 MS4A8Q9BY19 250 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 SERHL2Q9H4I8 314 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 MARCH7Q9H992 704 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 SEMA3GQ9NS98 782 aa18.26■□□□□ 0.51
VPS28-213ENST00000530983 CKAP5Q14008 2032 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 HEPACAM2A8MVW5 462 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 WWP2O00308 870 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 HOXC11O43248 304 aaPredicted RBP18.25■□□□□ 0.51
VPS28-213ENST00000530983 IDH3BO43837 385 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 PDE9AO76083 593 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 CXCR2P25025 360 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 FRKP42685 505 aaPredicted RBP18.25■□□□□ 0.51
VPS28-213ENST00000530983 MESP2Q0VG99 397 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 MFSD4BQ5TF39 518 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 AGAP6Q5VW22 663 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 PAQR6Q6TCH4 344 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 GDPGP1Q6ZNW5 385 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 ZNF765Q7L2R6 523 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 COMTD1Q86VU5 262 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 C12orf40Q86WS4 652 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 KRT73Q86Y46 540 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 NANOGP1Q8N7R0 232 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 TCEANCQ8N8B7 351 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 OR8J1Q8NGP2 316 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 GPR151Q8TDV0 419 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 ASB15Q8WXK1 588 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 AGAP4Q96P64 663 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 RNF208Q9H0X6 261 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 LHX9Q9NQ69 397 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 CUEDC1Q9NWM3 386 aaPredicted RBP18.25■□□□□ 0.51
VPS28-213ENST00000530983 NDUFB11Q9NX14 153 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 SEC14L4Q9UDX3 406 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 TAC3Q9UHF0 121 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 GPR34Q9UPC5 381 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 RPL36Q9Y3U8 105 aaKnown RBP18.25■□□□□ 0.51
VPS28-213ENST00000530983 N6AMT1Q9Y5N5 214 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 V9GYH0 126 aa18.25■□□□□ 0.51
VPS28-213ENST00000530983 PRAMEF27A3QJZ7 478 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 RGS5O15539 181 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 KELP23276 732 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 PSMA1P25786 263 aaKnown RBP18.24■□□□□ 0.51
VPS28-213ENST00000530983 NTHL1P78549 312 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 TARDBPQ13148 414 aaKnown RBP eCLIP18.24■□□□□ 0.51
VPS28-213ENST00000530983 HEPACAMQ14CZ8 416 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 SPDYE7PQ495Y7 208 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 ST13P5Q8NFI4 369 aaPredicted RBP18.24■□□□□ 0.51
VPS28-213ENST00000530983 SMPDL3AQ92484 453 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 EXOSC8Q96B26 276 aaKnown RBP18.24■□□□□ 0.51
VPS28-213ENST00000530983 TSSK6Q9BXA6 273 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 MVB12BQ9H7P6 319 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 TMEM39AQ9NV64 488 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 STUB1Q9UNE7 303 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 ZNF670-ZNF695F2Z2N8 137 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 CAPN5O15484 640 aaPredicted RBP18.24■□□□□ 0.51
VPS28-213ENST00000530983 SH3BP5O60239 455 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 TPST2O60704 377 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 PRNPP04156 253 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 ERVFC1P60507 584 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 DHCR24Q15392 516 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 ZMAT1Q5H9K5 638 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 TCEAL5Q5H9L2 206 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 PDZD3Q86UT5 571 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 C17orf64Q86WR6 236 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 OR8H2Q8N162 312 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 IQCF1Q8N6M8 205 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 PSD4Q8NDX1 1056 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 OTUB2Q96DC9 234 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 TEFMQ96QE5 360 aaKnown RBP18.24■□□□□ 0.51
VPS28-213ENST00000530983 TREX2Q9BQ50 279 aaPredicted RBP18.24■□□□□ 0.51
VPS28-213ENST00000530983 RACGAP1Q9H0H5 632 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 SNTG1Q9NSN8 517 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 SEC14L3Q9UDX4 400 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 MUTYHQ9UIF7 546 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 A4GNTQ9UNA3 340 aa18.24■□□□□ 0.51
VPS28-213ENST00000530983 FEZF1A0PJY2 475 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 FAM172BPA6NC97 362 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 TMPRSS11DO60235 418 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 CYP7B1O75881 506 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 KRT8P05787 483 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 ITGB7P26010 798 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 TGM4P49221 684 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 MNX1P50219 401 aaPredicted RBP18.23■□□□□ 0.51
VPS28-213ENST00000530983 ST8SIA6P61647 398 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 DPTQ07507 201 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 CNTN1Q12860 1018 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 PIN1Q13526 163 aaPredicted RBP18.23■□□□□ 0.51
VPS28-213ENST00000530983 SYPL1Q16563 259 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 OCLNQ16625 522 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 C1orf53Q5VUE5 145 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 RNLSQ5VYX0 342 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 NRARPQ7Z6K4 114 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 LAX1Q8IWV1 398 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 PROKR2Q8NFJ6 384 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 OR2B2Q9GZK3 357 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 POLR2J2Q9GZM3 115 aaKnown RBP18.23■□□□□ 0.51
VPS28-213ENST00000530983 TEX10Q9NXF1 929 aaPredicted RBP18.23■□□□□ 0.51
VPS28-213ENST00000530983 WBP11Q9Y2W2 641 aaKnown RBP18.23■□□□□ 0.51
VPS28-213ENST00000530983 HYKKA2RU49 373 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 TPD52L2O43399 206 aaKnown RBP18.23■□□□□ 0.51
VPS28-213ENST00000530983 FGF19O95750 216 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms