RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 NDNQ99608 321 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 ZSCAN16Q9H4T2 348 aaPredicted RBP3.35□□□□□ -1.87
CD44-219ENST00000525685 DHX33Q9H6R0 707 aaKnown RBP3.35□□□□□ -1.87
CD44-219ENST00000525685 TUFT1Q9NNX1 390 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 RAB9BQ9NP90 201 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 XPNPEP1Q9NQW7 623 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 NRBP2Q9NSY0 501 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 ZDHHC18Q9NUE0 388 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 TBC1D13Q9NVG8 400 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 HACD3Q9P035 362 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 IL36AQ9UHA7 158 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 NSG2Q9Y328 171 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 MICAL3Q7RTP6 2002 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 COL4A6Q14031 1691 aa3.35□□□□□ -1.87
CD44-219ENST00000525685 COL4A4P53420 1690 aaPredicted RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 TRAV18A0A075B6X5 111 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 IGKV3D-15A0A087WSY6 115 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 M0QZ92 97 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 CCL24O00175 119 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 MAGEB2O15479 319 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 FCGR3BO75015 233 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 CRCPO75575 148 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 YEATS4O95619 227 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 MOCS2O96007 188 aaPredicted RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 SP9P0CG40 484 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 TRIM49P0CI25 452 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 TRIM49CP0CI26 452 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 GP1BBP13224 206 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 MUTP22033 750 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 PRKACGP22612 351 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 PSMB4P28070 264 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 MARCKSP29966 332 aaPredicted RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 CD52P31358 61 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 NPBWR1P48145 328 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 LEPRP48357 1165 aaKnown RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 VEGFCP49767 419 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 GPC3P51654 580 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 CLDN15P56746 228 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 NLRP11P59045 1033 aaKnown RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 DCDC1P59894 354 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 IRX1P78414 480 aaPredicted RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 DEFB103AP81534 67 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 ABRQ12979 859 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 EFTUD2Q15029 972 aaKnown RBP eCLIP3.34□□□□□ -1.87
CD44-219ENST00000525685 KARSQ15046 597 aaKnown RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 STK38Q15208 465 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 TAZQ16635 292 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 CDO1Q16878 200 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 LRIT3Q3SXY7 679 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 ZNF542PQ5EBM4 170 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 HECTD3Q5T447 861 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 FAM46CQ5VWP2 391 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 OTUD6AQ7L8S5 288 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 NOTCH2NLQ7Z3S9 236 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 HOOK3Q86VS8 718 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 FAM228AQ86W67 206 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 APCDD1Q8J025 514 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 PRSS35Q8N3Z0 413 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 ZNF614Q8N883 585 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 LINC00301Q8NCQ3 95 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 OR5T2Q8NGG2 359 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 OR4D10Q8NGI6 311 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 LRRC15Q8TF66 581 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 SEPT8Q92599 483 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 RIT1Q92963 219 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 P2RX5Q93086 422 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 LINC00479Q96M42 142 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 CCDC43Q96MW1 224 aaKnown RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 ZNF396Q96N95 335 aaPredicted RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 AGAP3Q96P47 875 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 OPRPNQ99935 248 aaPredicted RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 RAB34Q9BZG1 259 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 POLR3FQ9H1D9 316 aaPredicted RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 DPEP2Q9H4A9 486 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 B3GAT2Q9NPZ5 323 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 DDX19AQ9NUU7 478 aaKnown RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 ELF5Q9UKW6 265 aaPredicted RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 GINS2Q9Y248 185 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 ITM2BQ9Y287 266 aa3.34□□□□□ -1.87
CD44-219ENST00000525685 TNRC18O15417 2968 aaPredicted RBP3.34□□□□□ -1.87
CD44-219ENST00000525685 KIAA1671Q9BY89 1806 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 ARHGEF35A5YM69 484 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 C15orf61A6NNL5 157 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 A8MVM7 634 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 PRSS46E5RG02 174 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 SLC1A7O00341 560 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 CYTIPO60759 359 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 KHDRBS3O75525 346 aaKnown RBP3.33□□□□□ -1.88
CD44-219ENST00000525685 CSDE1O75534 798 aaKnown RBP3.33□□□□□ -1.88
CD44-219ENST00000525685 DUS4LO95620 317 aaKnown RBP3.33□□□□□ -1.88
CD44-219ENST00000525685 GLRA2P23416 452 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 TMOD1P28289 359 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 HLA-FP30511 346 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 ARL2P36404 184 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 LONP1P36776 959 aaKnown RBP3.33□□□□□ -1.88
CD44-219ENST00000525685 OPRL1P41146 370 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 SOX3P41225 446 aa3.33□□□□□ -1.88
CD44-219ENST00000525685 CDX1P47902 265 aaPredicted RBP3.33□□□□□ -1.88
CD44-219ENST00000525685 CRYBB1P53674 252 aaPredicted RBP3.33□□□□□ -1.88
CD44-219ENST00000525685 SLC12A3P55017 1021 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms